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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mask__writer__seqloc_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/seqmasks_io/mask_writer_seqloc.cpp Source File

Go to the SVN repository for this file.

(

==

) {

}

(

==

) {

}

(

==

) {

runtime_error(

+

);

masked_ranges.reserve(

.size());

masked_ranges.push_back

runtime_error(

);

ncbi::TMaskedQueryRegions mask

ESerialDataFormat m_OutputFormat

Seq-loc output format.

CMaskWriterSeqLoc(CNcbiOstream &arg_os, const string &format)

Object constructor.

virtual void Print(objects::CBioseq_Handle &bsh, const TMaskList &mask, bool parsed_id=false)

Send the masking data to the output stream.

A base class for winmasker output writers.

CNcbiOstream & os

the standard C++ ostream object

vector< TMaskedInterval > TMaskList

A type representing the total of masking information about a sequence.

vector< CRange< TSeqPos > > TRanges

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define MSerial_AsnBinary

#define MSerial_AsnText

I/O stream manipulators –.

@ eSerial_AsnText

ASN.1 text.

@ eSerial_AsnBinary

ASN.1 binary.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

double value_type

The numeric datatype used by the parser.

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