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NCBI C++ ToolKit: src/objtools/seqmasks_io/mask_writer_fasta.cpp Source File

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61

TMaskList::const_iterator imask =

mask

.begin();

67  if

( imask !=

mask

.end() &&

i

>= imask->first ) {

68  if

( i <= imask->second ) {

80  if

(imask !=

mask

.end()

81

&&

i

>= imask->first && i <= imask->second ) {

92

accumulator.append( 1,

letter

);

96  os

<< accumulator <<

"\n"

;

101  if

( accumulator.length() )

os

<< accumulator <<

"\n"

;

User-defined methods of the data storage class.

ncbi::TMaskedQueryRegions mask

virtual void Print(objects::CBioseq_Handle &bsh, const TMaskList &mask, bool parsed_id=false)

Output masked sequence data.

virtual void PrintId(objects::CBioseq_Handle &bsh, bool parsed_id)

Output of the sequence id.

CNcbiOstream & os

the standard C++ ostream object

vector< TMaskedInterval > TMaskList

A type representing the total of masking information about a sequence.

unsigned int TSeqPos

Type for sequence locations and lengths.

@ eCoding_Iupac

Set coding to printable coding (Iupacna or Iupacaa)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static Uint4 letter(char c)

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