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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mask__writer_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/seqmasks_io/mask_writer.cpp Source File

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64

oss << sequence::CDeflineGenerator().GenerateDefline(bsh);

virtual void PrintId(objects::CBioseq_Handle &bsh, bool parsed_id)

Output of the sequence id.

virtual string IdToString(objects::CBioseq_Handle &bsh, bool parsed_id)

Convert the sequence id to a string.

CNcbiOstream & os

the standard C++ ostream object

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

API (CDeflineGenerator) for computing sequences' titles ("definitions").

static string GetStringDescr(const CBioseq &bioseq, EStringFormat fmt)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.


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