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NCBI C++ ToolKit: src/objtools/blast/seqdb_writer/mask_info_registry.cpp Source File

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(

(

= start;

< stop &&

& options,

& progname

)

algo_id = (

)program;

(

);

vector< string > m_RegisteredAlgos

std::set< int > m_UsedIds

int Add(EBlast_filter_program program, const string &options=string(), const string &progname=string())

Attempt to register the information about a masking algorithm.

int x_FindNextValidIdWithinRange(int start, int stop)

int x_AssignId(int start, int end)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

EBlast_filter_program

This defines the possible sequence filtering algorithms to be used in a BLAST database.

@ eBlast_filter_program_dust

@ eBlast_filter_program_max

@ eBlast_filter_program_repeat

@ eBlast_filter_program_seg

@ eBlast_filter_program_windowmasker

@ eBlast_filter_program_not_set

@ eBlast_filter_program_other

unsigned int

A callback function used to compare two keys in a database.

Declares CMaskInfoRegistry class.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

Defines exception class for WriteDB.

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