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NCBI C++ ToolKit: src/objtools/seqmasks_io/mask_fasta_reader.cpp Source File

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52  "error reading input stream"

);

55  if

( aSeqEntry != 0 && aSeqEntry->

IsSeq

() &&

objects::CFastaReader fasta_reader_

Fasta reader object.

virtual CRef< objects::CSeq_entry > GetNextSequence()

Read next sequence from fasta stream.

bool is_nucleotide_

This object is reading nucleotide sequences.

Exceptions thrown by CMaskReader class.

CNcbiIstream & input_stream

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TSeq & GetSeq(void) const

Get the variant data.

bool IsSeq(void) const

Check if variant Seq is selected.

NCBI C++ auxiliary debug macros.


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