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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mapping__object__loader_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/loaders/mapping_object_loader.cpp Source File

67

}

NCBI_CATCH

(

"CMappingObjectLoader - Creating Id mapper."

);

76  for

( ; idit; ++idit ) {

79  if

(src_idh &&

m_IdMap

.count(src_idh) == 0) {

109  for

( ; idit; ++idit ) {

112

genomic_id_set.

insert

(idh);

118  for

( ; feat_iter; ++feat_iter) {

121  if

(feat_iter->IsSetProduct()) {

125  switch

(feat_iter->GetData().Which()) {

127

transcript_id_set.

insert

(idh);

130

protein_id_set.

insert

(idh);

146 

vector<CSeq_id_Handle> genomic_ids;

147

vector<CSeq_id_Handle> transcript_ids;

148

vector<CSeq_id_Handle> protein_ids;

151  if

(transcript_id_set.count(*it) == 0 &&

152

protein_id_set.count(*it) == 0) {

153

genomic_ids.push_back(*it);

158

transcript_ids.push_back(*it);

162

protein_ids.push_back(*it);

167  if

(!genomic_ids.empty())

169

(

"Genomic"

, genomic_ids));

170  if

(!transcript_ids.empty())

172

(

"Transcript"

, transcript_ids));

173  if

(!protein_ids.empty())

175

(

"Protein"

, protein_ids));

190

}

catch

(

const

std::exception&) {

198  if

(dlg.ShowModal() != wxID_OK)

209  for

( ; id_iter; ++id_iter) {

214 

id_iter->

Assign

(*new_id->second.GetSeqId());

User-defined methods of the data storage class.

User-defined methods of the data storage class.

virtual void SetRegistryPath(const string &path)

bool IsRefSeq() const

Is this assembly a RefSeq assembly?

static CRef< CGencollSvc > GetInstance(void)

IdMapper implementation using a GC-Assembly.

EAliasMapping

Mapping destination type.

@ eGenBankAcc

GenBank accession.

@ eRefSeqAcc

RefSeq accession.

void x_CreateMapper(const string &assembly)

unique_ptr< objects::IIdMapper > m_IdMapper

void x_UpdateMap(objects::CSeq_annot &annot)

bool x_ShowMappingDlg(IObjectLoader::TObjects &objects)

Template class for iteration on objects of class C (non-medifiable version)

Template class for iteration on objects of class C.

vector< SObject > TObjects

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define NCBI_CATCH(message)

Catch CExceptions as well This macro is deprecated - use *_X or *_XX variant instead of it.

void SetData(const TData &data, TIdMap &map, objects::CScope &scope)

vector< pair< string, THandles > > TData

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

void Assign(const CTypeIteratorBase &it)

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

double value_type

The numeric datatype used by the parser.

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