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NCBI C++ ToolKit: src/objmgr/mapped_feat.cpp Source File

(

!= &feat ) {

CSeq_feat_Handle::operator=(feat);

const TRange & GetTotalRange(void) const

bool IsMappedLocation(void) const

bool IsMapped(void) const

const CSeq_id * GetProductId(void) const

bool IsMappedProduct(void) const

const CSeq_id * GetLocationId(void) const

bool IsPartial(void) const

bool IsRegular(void) const

bool IsSortedSeqTableFeat(void) const

const CAnnotObject_Info & GetAnnotObject_Info(void) const

bool IsSNPTableFeat(void) const

const CSeq_annot_Handle & GetSeq_annot_Handle(void) const

TAnnotIndex GetAnnotIndex(void) const

CAnnotMapping_Info & GetMappingInfo(void) const

CRef< CCreatedFeat_Ref > m_CreatedOriginal

CRef< CSeq_loc > GetMappedLocation(const CAnnotMapping_Info &map, const CSeq_feat &orig_feat)

CConstRef< CSeq_feat > GetMappedFeature(const CAnnotMapping_Info &map, const CSeq_feat &orig_feat)

namespace ncbi::objects::

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

CRef< CCreatedFeat_Ref > m_CreatedFeat

virtual bool GetPartial(void) const

virtual CSeq_id_Handle GetLocationId(void) const

CSeq_annot_Handle m_Seq_annot

CConstRef< CSeq_feat > m_CreatedOriginalFeat

virtual TRange GetRange(void) const

Get range for current seq-feat.

virtual TRange GetProductTotalRange(void) const

bool IsTableSNP(void) const

Check if this is SNP table feature.

CConstRef< CSeq_feat > GetOriginalSeq_feat(void) const

bool IsTableFeat(void) const

Check if this is non-SNP table feature.

virtual bool IsSetPartial(void) const

bool IsSortedTableFeat(void) const

Check if this is a simple feature from sorted Seq-table.

bool IsPlainFeat(void) const

Check if this is plain feature.

virtual CSeq_id_Handle GetProductId(void) const

CSeq_id_Handle GetProductId(void) const

CAnnotMapping_Info m_MappingInfoObj

bool IsSetPartial(void) const

CMappedFeat & operator=(const CMappedFeat &feat)

const CSeq_loc & GetLocation(void) const

bool GetPartial(void) const

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

TRange GetProductTotalRange(void) const

const CSeq_feat & GetMappedFeature(void) const

Feature mapped to the master sequence.

CCreatedFeat_Ref m_MappedFeat

const CSeq_loc & GetProduct(void) const

CMappedFeat & Set(CAnnot_Collector &collector, const CAnnotObject_Ref &feat_ref)

TRange GetRange(void) const

Get range for mapped seq-feat's location.

CConstRef< CSeq_loc > GetMappedLocation(void) const

CAnnotMapping_Info * m_MappingInfoPtr

CConstRef< CSeq_feat > GetSeq_feat(void) const

Get current seq-feat.

CSeq_id_Handle GetLocationId(void) const

void Reset(void)

Reset reference object.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

const TLocation & GetLocation(void) const

Get the Location member data.

const TProduct & GetProduct(void) const

Get the Product member data.

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