A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/makeblastdb_8cpp.html below:

NCBI C++ ToolKit: src/app/blastdb/makeblastdb.cpp File Reference

Command line tool to create BLAST databases. More...

Go to the source code of this file.

Go to the SVN repository for this file.

Command line tool to create BLAST databases.

This is the successor to formatdb from the C toolkit

Definition in file makeblastdb.cpp.

◆ kInput() ◆ kInputSeparators() ◆ kOutput() ◆ main() ◆ s_GetTaxId()

Definition at line 367 of file makeblastdb.cpp.

References CSeq_descr_Base::Get(), CSeq_entry::GetDescr(), CSeqdesc_Base::GetOrg(), CBioSource_Base::GetOrg(), CBioseq::GetParentEntry(), CSeq_entry::GetParentEntry(), CSeqdesc_Base::GetSource(), COrg_ref::GetTaxId(), CSeqdesc_Base::IsOrg(), CSeq_entry::IsSetDescr(), CSeqdesc_Base::IsSource(), ITERATE, NULL, and ZERO_TAX_ID.

Referenced by CSeqEntrySource::GetNext().

◆ s_HasTitle() ◆ s_ReadObject() [1/2]

Reads an object defined in a NCBI ASN.1 spec from a stream in multiple formats: binary and text ASN.1 and XML.

Parameters
file stream to read the object from [in] fmt specifies the format in which the object is encoded [in] obj on input is an empty CRef<> object, on output it's populated with the object read [in|out] msg error message to display if reading fails [in]

Definition at line 164 of file makeblastdb.cpp.

References CFormatGuess::eBinaryASN, CFormatGuess::eTextASN, file, MSerial_AsnBinary, MSerial_AsnText, msg(), NCBI_THROW, and CRef< C, Locker >::Reset().

Referenced by CSeqEntrySource::CSeqEntrySource(), s_ReadObject(), and CMakeBlastDBApp::x_ProcessMaskData().

◆ s_ReadObject() [2/2] ◆ Uint8ToString_DataSize() ◆ USING_SCOPE() [1/2] ◆ USING_SCOPE() [2/2] ◆ USING_NCBI_SCOPE

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4