#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbireg.hpp>
#include <corelib/ncbi_limits.hpp>
#include <util/tables/raw_scoremat.h>
#include <ctype.h>
#include <iostream>
#include <iomanip>
#include <algorithm>
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static string s_FormatAA (int aa) static void s_BuiltInSM (const string &sm, map< string, string > &out_map) static void sWriteLine (CNcbiOstream &out, map< string, string > &out_map, const string &name) static bool sReadAA_M (CNcbiIstream &in, const string &m_line, map< string, string > &out_map) static const string kAAIndexOrder ("ARNDCQEGHILKMFPSTWYV") static bool sReadAA_I (CNcbiIstream &in, map< string, string > &out_map) bool s_ReadAAIndex (const string &accession, CNcbiIstream &in, map< string, string > &out_map) int NcbiSys_main (int argc, ncbi::TXChar *argv[]) ◆ kAAIndexOrder() ◆ NcbiSys_main() ◆ s_BuiltInSM()Definition at line 91 of file make_score_method.cpp.
References _TROUBLE, map_checker< Container >::empty(), i, NStr::IntToString(), isupper(), l(), max(), min(), NCBISM_Blosum45, NCBISM_Blosum62, NCBISM_Blosum80, NCBISM_Pam250, NCBISM_Pam30, NCBISM_Pam70, NULL, SNCBIPackedScoreMatrix::scores, SNCBIPackedScoreMatrix::symbols, and rapidjson::value.
Referenced by CMakeScoreMethodApp::Run().
◆ s_FormatAA() ◆ s_ReadAAIndex() ◆ sReadAA_I() ◆ sReadAA_M() ◆ sWriteLine() ◆ USING_NCBI_SCOPERetroSearch is an open source project built by @garambo | Open a GitHub Issue
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