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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/make__score__method_8cpp.html below:

NCBI C++ ToolKit: src/gui/widgets/data/demo/make_score_method.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbireg.hpp>
#include <corelib/ncbi_limits.hpp>
#include <util/tables/raw_scoremat.h>
#include <ctype.h>
#include <iostream>
#include <iomanip>
#include <algorithm>

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static string  s_FormatAA (int aa)   static void  s_BuiltInSM (const string &sm, map< string, string > &out_map)   static void  sWriteLine (CNcbiOstream &out, map< string, string > &out_map, const string &name)   static bool  sReadAA_M (CNcbiIstream &in, const string &m_line, map< string, string > &out_map)   static const string  kAAIndexOrder ("ARNDCQEGHILKMFPSTWYV")   static bool  sReadAA_I (CNcbiIstream &in, map< string, string > &out_map)   bool  s_ReadAAIndex (const string &accession, CNcbiIstream &in, map< string, string > &out_map)   int  NcbiSys_main (int argc, ncbi::TXChar *argv[])   ◆ kAAIndexOrder() ◆ NcbiSys_main() ◆ s_BuiltInSM()

Definition at line 91 of file make_score_method.cpp.

References _TROUBLE, map_checker< Container >::empty(), i, NStr::IntToString(), isupper(), l(), max(), min(), NCBISM_Blosum45, NCBISM_Blosum62, NCBISM_Blosum80, NCBISM_Pam250, NCBISM_Pam30, NCBISM_Pam70, NULL, SNCBIPackedScoreMatrix::scores, SNCBIPackedScoreMatrix::symbols, and rapidjson::value.

Referenced by CMakeScoreMethodApp::Run().

◆ s_FormatAA() ◆ s_ReadAAIndex() ◆ sReadAA_I() ◆ sReadAA_M() ◆ sWriteLine() ◆ USING_NCBI_SCOPE

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