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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/mail__report_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/mail_report.cpp Source File

->SetColumns().push_back(id_col);

old_tax->

().SetTitle(

);

->SetColumns().push_back(old_tax);

is_barcode->

().SetTitle(

);

->SetColumns().push_back(is_barcode);

->Assign(*(bi->GetSeqId()));

id_col->

().SetId().push_back(

);

old_tax->

().SetString().push_back(taxname);

barcode =

;

is_barcode->

().SetInt().push_back(barcode ? 1 : 0);

new_tax->

().SetTitle(

);

.SetColumns().push_back(new_tax);

taxon->

().SetTitle(

);

.SetColumns().push_back(taxon);

vector<CRef<COrg_ref> > org_ref_list;

new_tax->

().SetString().push_back(taxname);

org_ref_list.push_back(org);

pub_stat->

().SetTitle(

);

.SetColumns().push_back(pub_stat);

is_unpub =

;

((*reply_it)->IsData()) {

((*reply_it)->GetData().IsSetStatus()) {

((*status_it)->IsSetProperty()

((*reply_it)->GetData().IsSetOrg() && (*reply_it)->GetData().GetOrg().IsSetDb()) {

&& (*db_it)->IsSetTag() && (*db_it)->GetTag().IsId()) {

taxid = (*db_it)->GetTag().GetId();

taxon->

().SetInt().push_back(taxid);

pub_stat->

().SetInt().push_back(is_unpub ? 1 : 0);

(

= 0;

<

.GetColumn(0).GetData().GetSize();

++) {

pub_stat->

().SetInt().push_back(0);

taxon->

().SetInt().push_back(0);

lines <<

;

lines <<

.GetColumns()[1]->GetData().GetString()[

];

lines <<

.GetColumns()[3]->GetData().GetString()[

];

lines <<

;

(

= 0;

<

.GetColumns().

()->GetData().GetSize();

++) {

(

.GetColumns()[4]->GetData().GetInt()[

] == 0) {

lines <<

;

(

= 0;

<

.GetColumns().

()->GetData().GetSize();

++) {

(

(

.GetColumns()[1]->GetData().GetString()[

],

) != string::npos

&&

(

.GetColumns()[3]->GetData().GetString()[

],

) == string::npos) {

lines <<

;

(

= 0;

<

.GetColumns().

()->GetData().GetSize();

++) {

(

.GetColumns()[5]->GetData().GetInt()[

] != 0) {

User-defined methods of the data storage class.

User-defined methods of the data storage class.

virtual CRef< CTaxon3_reply > SendOrgRefList(const vector< CRef< COrg_ref > > &list, COrg_ref::fOrgref_parts result_parts=COrg_ref::eOrgref_default, fT3reply_parts t3result_parts=eT3reply_default)

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

CConstRef< CSeq_id > GetSeqId(void) const

@ eContent

Untagged human-readable accession or the like.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

const TOrg & GetOrg(void) const

Get the Org member data.

vector< CRef< CDbtag > > TDb

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

void SetTaxname(const TTaxname &value)

Assign a value to Taxname data member.

bool IsSetTaxname(void) const

preferred formal name Check if a value has been assigned to Taxname data member.

void SetHeader(THeader &value)

Assign a value to Header data member.

void SetData(TData &value)

Assign a value to Data data member.

vector< CRef< CSeq_id > > TId

const TSource & GetSource(void) const

Get the variant data.

TTech GetTech(void) const

Get the Tech member data.

bool IsSetTech(void) const

Check if a value has been assigned to Tech data member.

const TMolinfo & GetMolinfo(void) const

Get the variant data.

@ eTech_barcode

barcode of life project

@ e_Molinfo

info on the molecule and techniques

@ e_Source

source of materials, includes Org-ref

@ eMol_na

just a nucleic acid

list< CRef< CT3StatusFlags > > TStatus

list< CRef< CT3Reply > > TReply

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

void MakeMailReportPostReport(CSeq_table &table, CScope &scope)

void PrintReportLineHeader(ostringstream &lines)

CRef< CSeq_table > MakeMailReportPreReport(CSeq_entry_Handle seh)

string GetReportFromMailReportTable(const CSeq_table &table, CScope *scope)

void ReportMailReportLine(ostringstream &lines, const CSeq_table &table, size_t i, CScope *scope=nullptr)

constexpr auto front(list< Head, As... >, T=T()) noexcept -> Head

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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