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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__worker_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/macro_worker.cpp Source File

50 if

(filename.empty()) {

59 bool

lookup_synfile =

true

;

61

vector<CRef<CMacroRep>> macro_list;

91 for

(

auto

&& it : macro_list) {

106 if

(macro_names.empty()) {

117 for

(

auto

&& it : macro_names) {

139

create_cmd->Execute();

145 LOG_POST

(

Info

"Total time spent on executing the macro is: "

<< time <<

" seconds."

);

172 string msg

"Execution of the macro has failed at "

+ macro_rep.

GetTitle

() +

" step:"

;

175

errorDlg.SetException(

msg

, err);

176

errorDlg.ShowModal();

181 if

(!report.GetLog().empty()) {

182 log

<< report.GetName() <<

":\n"

<< report.GetLog() <<

"\n"

;

185 const auto

& logs = macro_stat.GetFunctionsLog();

187 log

<< report.GetName() <<

":\n"

;

189 for

(

const auto

& it : logs) {

190 log

<< it->Print() <<

"\n"

;

194 if

(!report.GetErrorLog().empty()) {

195 log

"\nERRORS:\n"

<< report.GetErrorLog();

206

macro_rep.Reset(engine.

Parse

(macro_name));

218 string msg

(

"Parsing of "

+ macro_name +

" step has failed:\n"

);

229 bool

resolved =

true

;

240

vector<string> macro_names;

244 for

(

const auto

& name : macro_names) {

246

macros.push_back(name);

void AddCommand(IEditCommand &command)

The following asn-selectors are defined to be used in the FOR EACH statement:

implements special composite command, which does not call to its internal commands when run the very ...

Class for parsed macro representation.

ICommandProccessor * m_CmdProcessor

bool x_ExecuteOneMacro(macro::CMacroRep &macro_rep, macro::CMacroEngine &engine, CNcbiOstrstream &log, bool resolve_vars=false)

static const char * sm_AutofixWGS

vector< string > TVecMacroNames

static const char * sm_AutofixGB

void x_HandleOutput(const bool status, const bool add_user_object, const string &time)

bool x_ResolveVariables(CRef< macro::CMacroRep > macro_rep)

CRef< CMacroCmdComposite > m_MacroCmd

static TVecMacroNames s_GetMacroSteps(const CTempString &macro_class)

CConstRef< objects::CSeq_submit > m_SeqSubmit

bool ExecuteMacros(const vector< string > &macro_names, CNcbiOstrstream &log, bool add_user_object=false, bool resolve_vars=false)

static const char * sm_AutofixTSA

objects::CSeq_entry_Handle m_Seh

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

string ReportAll(TDiagPostFlags flags=eDPF_Exception) const

Report all exceptions.

void Info(CExceptionArgs_Base &args)

bool FindNcbiAutofixUserObject(const objects::CSeq_entry_Handle &tse)

virtual void Execute()

Do the editing action.

virtual void Unexecute()

Undo (opposite to Execute())

const CMacroStat & GetStatistics() const

Gets the most recently executed macro statistics.

const string & GetTitle() const

Return macro description.

bool AreThereGUIResolvableVars() const

Return true if there are any GUI variables.

static CMacroLib & GetInstance()

bool ReadAndParseMacros(const string &filename, vector< CRef< CMacroRep >> &macro_list)

Parses a file containing macros and stores them in a list.

const CMacroLog & GetMacroReport() const

void GetMacroNames(vector< string > &macro_names) const

Function builds a list of macro names in the library to use for example in the toolbar.

CRef< objects::CSeqdesc > MakeNcbiAutofixUserObject()

const string & GetErrorMessage() const

Get error message in case previous command was unsuccessful.

bool Exec(const CMacroRep &macro_rep, const CMacroBioData &data, CRef< CMacroCmdComposite > CmdComposite, bool throw_on_error=false, CNcbiOstream *ostream=nullptr)

Executes a macro.

CMacroRep * Parse(const string &macro_text)

Parses macro script into its binary representation.

void NcbiErrorBox(const string &message, const string &title="Error")

specialized Message Box function for reporting critical errors

EDialogReturnValue NcbiMessageBox(const string &message, TDialogType type=eDialog_Ok, EDialogIcon icon=eIcon_Exclamation, const string &title="Error", EDialogTextMode text_mode=eRaw)

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

void Reset(void)

Reset reference object.

TObjectType & GetNCObject(void) const

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static SIZE_TYPE FindNoCase(const CTempString str, const CTempString pattern, SIZE_TYPE start, SIZE_TYPE end, EOccurrence which=eFirst)

Find the pattern in the specified range of a string using a case insensitive search.

double Elapsed(void) const

Return time elapsed since first Start() or last Restart() call (in seconds).

void Start(void)

Start the timer.

string AsString(const CTimeFormat &fmt=kEmptyStr) const

Transform stopwatch time to string.

void ReportMacroExecution()

Report when a macro is executed.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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