Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__util_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/macro_util.cpp Source File

(entry_ci->IsSetDescr()) {

((*dit)->IsSource()) {

& desc_src = (*dit)->GetSource();

(&desc_src == &bsrc) {

(entry_ci->IsSeq()) {

(&(fi->GetData().GetBiosrc()) == &bsrc) {

(

b_iter(tse); b_iter; ++b_iter) {

(

desc_it(*b_iter); desc_it; ++desc_it) {

(seqdesc == &(*desc_it)) {

(bsrc == &(desc_it->GetSource())) {

(molinfo == &(desc_it->GetMolinfo())) {

.GetPointedObject();

dbtag_name =

;

objs.push_back(

);

(elem.

()) {

(pointed.

() == dbtag_name) {

(obj.

() == dbtag_name) {

objs.push_back(

);

(obj.

() ==

) {

(obj.

() ==

) {

(obj.

() ==

) {

(node.

()) {

all_gbquals =

;

(

&& it : objs) {

all_gbquals =

;

(all_gbquals && !objs.empty()) {

(

&& it : objs) {

val_member = it.field.FindClassMember(

).GetMember();

((*it)->IsSetData() && (*it)->GetData().IsGene()) {

((*it)->IsTitle() && (*it)->GetTitle().empty()) {

((*it)->IsComment() && (*it)->GetComment().empty()) {

((*it)->IsGenbank() && (*it)->GetGenbank().IsEmpty()) {

(

->IsString()) {

newValue =

->GetString();

(

->IsInt()) {

newValue =

->GetString();

(

->IsDouble()) {

newValue =

->GetString();

subtype =

->GetSubtype();

descr =

->GetDescription();

str1(name1), str2(name2);

user_obj->

().SetStr(

);

(entry_ci->IsSetDescr()) {

(issubsrc || isorgmod);

is_taxname =

;

modified =

;

first_initials = (std_name.

()) ?

(first_initials.empty()) {

(orig_initials.empty()) {

middle_init = new_first_init + orig_initials;

(orig_initials.empty()) {

first_name = std_name.

();

middle_init = orig_initials.substr(first_initials.length());

(middle_init.empty()) {

first_name = std_name.

();

first_name = std_name.

();

new_init += middle_init;

modified =

;

(orig_initials.empty()) {

middle_init = orig_initials.substr(first_initials.length());

(middle_init.empty()) {

modified =

;

first_initials = (std_name.

()) ?

(first_initials.empty()) {

(orig_initials.empty()) {

middle_init = orig_initials;

(orig_initials.empty()) {

inits = first_initials;

inits.append(newValue);

middle_init = orig_initials.substr(first_initials.length());

(middle_init.empty()) {

middle_init = orig_initials + newValue;

orig_val = middle_init;

modified =

;

first_initials = (std_name.

()) ?

(first_initials.empty()) {

middle_init = orig_initials.substr(first_initials.length());

(!middle_init.empty()) {

std_name.

(orig_initials.substr(0, first_initials.length()));

(newValue.empty())

vector<string>

;

(

&& it :

) {

vector<string> full_name;

first_name, last_name, middle_init, suffix;

(full_name.size() == 4) {

first_name = full_name[0];

middle_init = full_name[1];

last_name = full_name[2];

suffix = full_name[3];

(full_name.size() == 3) {

first_name = full_name[0];

middle_init = full_name[1];

last_name = full_name[2];

(full_name.size() == 2) {

first_name = full_name[0];

last_name = full_name[1];

(full_name.size() == 1)

last_name = full_name[0];

(!last_name.empty()) {

(!first_name.empty())

(!middle_init.empty()) {

initials.append(

);

(!initials.empty()) {

auth_list.

().SetStd().push_back(new_auth);

it = part_map.

(voucher_part);

(it != part_map.

()) part = it->second;

(

= 0;

< line.size(); ++

) {

(line[

] !=

&& (spaces == 0)) {

(line[

] ==

) {

(line[

] !=

&& (spaces > 0)) {

(spaces == 1)

escaped =

;

(iter != sm_CLabelMap.end()) {

start_pos = string::npos;

start_len = 0;

(start_pos <

.length() && !

(

.c_str()[start_pos])) {

(start_pos <

.length()) {

(start_pos + start_len <

.length() &&

(

.c_str()[start_pos + start_len])) {

(start_pos <

.length() && !

(

.c_str()[start_pos])) {

(start_pos <

.length()) {

(start_pos + start_len <

.length() &&

(

.c_str()[start_pos + start_len])) {

(start_pos == string::npos || start_pos ==

.length()) {

end_pos = string::npos;

end_pos =

.length();

end_pos = start_pos + start_len;

(end_pos <

.length() && !

(

.c_str()[end_pos])) {

(end_pos <

.length()) {

(end_pos + end_len <

.length() &&

(

.c_str()[end_pos + end_len])) {

end_pos = start_pos + start_len;

(end_pos <

.length() && !

(

.c_str()[end_pos])) {

(end_pos <

.length()) {

(end_pos + end_len <

.length() &&

(

.c_str()[end_pos + end_len])) {

(end_pos == string::npos || (end_pos ==

.length() &&

!=

) || end_pos < start_pos) {

any_change =

;

stop = end_pos;

(stop <

.length()) {

=

.substr(0, stop);

start = start_pos;

=

.substr(start);

@Auth_list.hpp User-defined methods of the data storage class.

CFeatListItem - basic configuration data for one "feature" type.

CConfigurableItems - a static list of items that can be configured.

bool IsSuppressed(void) const

Subclass of the IQueryParseUserObject which is held as the user-defined object in each CQueryParseNod...

class CMacroExecException

@Name_std.hpp User-defined methods of the data storage class.

static bool IsValidSubtypeName(const string &str, EVocabulary vocabulary=eVocabulary_raw)

static const CFeatList * GetFeatList()

@ eSubtype_bad

These no longer need to match the FEATDEF values in the C toolkit's objfdef.h.

static CTempString SubtypeValueToName(ESubtype eSubtype)

Turns a ESubtype into its string value which is NOT necessarily related to the identifier of the enum...

namespace ncbi::objects::

const CGene_ref * GetGeneXref(void) const

See related function in util/feature.hpp.

Base class for all serializable objects.

class CStaticArrayMap<> is an array adaptor that provides an STLish interface to statically-defined a...

TBase::const_iterator const_iterator

static bool IsValidSubtypeName(const string &str, EVocabulary vocabulary=eVocabulary_raw)

const_iterator end() const

const_iterator find(const key_type &key) const

@ eCapChange_firstlower_restnochange

capitalize the first letter, the rest is not changed

@ eCapChange_capword_afterspacepunc

capitalize the first letter and letters after spaces

@ eCapChange_capword_afterspace

first letter is lower case, the rest is not changed

@ eCapChange_firstcap_restnochange

capitalize the first letter, the rest is lower case

@ eCapChange_firstcap_restlower

change each letter to upper case

@ eCapChange_tolower

no change

@ eCapChange_toupper

change each letter to lower case

static const struct name_t names[]

static const char * str(char *buf, int n)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

objects::ECapChange ConvertStringtoCapitalOption(const string &cap_name)

CConstRef< objects::CBioseq > GetBioseqForSeqdescObject(const CSerialObject *obj, const objects::CSeq_entry_Handle &tse)

static string s_GetFirstNameInitials(const string &first_name)

bool StringsAreEquivalent(const string &name1, const string &name2)

bool RemoveFirstName(objects::CName_std &std_name)

CLabel::ELabelType NameToLabelType(const string &name)

bool ApplyMiddleInitial(objects::CName_std &std_name, const string &newValue, objects::edit::EExistingText existing_text)

DEFINE_STATIC_ARRAY_MAP(TLabelTypeToNameMap, sm_CLabelMap, s_LabelTypeToName)

void CleanupForTaxnameChange(CObjectInfo oi)

void ConvertMultiSpaces(string &line, const string &delimiter)

replace any instance of 2 or more spaces with a single instance of 'delimiter'

static bool s_FixInitials(objects::CName_std &name)

const char * kColl_suffix

objects::CSeqFeatData::ESubtype GetFeatSubtype(const string &feat_type)

const char * kMobileElementTType

CMQueryNodeValue::EType GetPrimitiveFromRef(CMQueryNodeValue &node)

bool FindNcbiAutofixUserObject(const objects::CSeq_entry_Handle &tse)

void s_SetInitials(CName_std &std_name, const string &middle_init)

list< SResolvedField > TObs

void Dereference()

If it is a reference it is resolved to the first non reference type in the hierarchy.

void GetPrimitiveObjInfosWithContainers(CMQueryNodeValue::TObs &objs, const CMQueryNodeValue::SResolvedField &info)

const char * kStrCommFieldValue

bool IsStructVoucherPart(const string &field)

void RemoveGeneXref(objects::CSeq_feat &feat)

string GetStringValue(CRef< CMQueryNodeValue > &value)

converts ints and doubles into string, by changing the type of the value

unsigned ApplyAuthorNames(objects::CAuth_list &auth_list, const string &newValue)

const char * kSatelliteType

const char * kSatelliteName

CObjectInfo GetPrimitiveObjInfo(const CObjectInfo &info)

EType GetDataType() const

const char * kStrCommFieldName

void GetPrimitiveObjectInfos(CMQueryNodeValue::TObs &objs, const CMQueryNodeValue::SResolvedField &info)

objects::CRNA_ref::EType GetRNAType(const string &rna_type)

string TransformForCSV(const string &str)

EStructVoucherPart GetSVPartFromString(const string voucher_part)

bool IsTaxname(CMQueryNodeValue::SResolvedField &res)

bool RemoveMiddleInitial(objects::CName_std &std_name)

const char * kInst_suffix

objects::edit::EExistingText ActionTypeToExistingTextOption(const string &action_type, const string &delimiter)

bool GetLocusTagFromProtRef(const objects::CSeq_feat &prot_feat, objects::CScope &scope, string &locus_tag)

bool IsSatelliteSubfield(const string &field)

bool IsMobileElementTSubfield(const string &field)

const char * kMobileElementTQual

bool ApplyFirstName(objects::CName_std &std_name, const string &newValue, objects::edit::EExistingText existing_text)

bool GetLocusTagFromGene(const objects::CGene_ref &gene, string &locus_tag)

bool IsBiosourceModifier(const string &field)

const char * kSpecid_suffix

bool EditText(string &str) const

static const TFeatLabelMap s_LabelTypeToName[]

void SwapGbQualWithValues(CMQueryNodeValue::TObs &objs)

CRef< objects::CSeqdesc > MakeNcbiAutofixUserObject()

const char * kMobileElementTName

EUnverifiedType GetUnverifiedType(const string &value)

void RemoveEmptyDescriptors(objects::CBioseq &bseq)

const char * kStrCommDbname

objects::CSeq_entry_Handle GetParentEntryForBioSource(const objects::CBioSource &bsrc, const objects::CSeq_entry_Handle &tse)

static const TObjectType * SafeCast(TTypeInfo type)

CElementIterator BeginElements(void) const

Create container elements iterator.

CObjectInfo GetPointedObject(void) const

Get data and type information of object to which this type refers.

CObjectInfo GetElement(void) const

Get element data and type information.

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

CObjectInfo GetMember(void) const

Get class member data.

bool Valid(void) const

Is iterator valid.

ETypeFamily GetTypeFamily(void) const

Get data type family.

CMemberIterator FindClassMember(const string &memberName) const

Find class member by its name.

const string & GetName(void) const

Get type name.

bool IsSet(void) const

Is member assigned a value.

const CSeq_feat * GetCDSForProduct(const CBioseq &product, CScope *scope)

Get the encoding CDS feature of a given protein sequence.

CConstRef< CSeq_feat > GetOverlappingGene(const CSeq_loc &loc, CScope &scope, ETransSplicing eTransSplicing=eTransSplicing_Auto)

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CConstRef< CBioseq > GetCompleteBioseq(void) const

Get the complete bioseq.

@ fIncludeGivenEntry

Include the top (given) entry.

@ fRecursive

Iterate recursively.

TObjectType & GetNCObject(void) const

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define USING_SCOPE(ns)

Use the specified namespace.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static string Int8ToString(Int8 value, TNumToStringFlags flags=0, int base=10)

Convert Int8 to string.

static string DoubleToString(double value, int precision=-1, TNumToStringFlags flags=0)

Convert double to string.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static bool EqualCase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-sensitive equality of a substring with another string.

static string Quote(const CTempString str, char quote_char='"', char escape_char = '\\')

Quote string (generic version).

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

@ eCase

Case sensitive compare.

void ResetNames(void)

Reset Names data member.

void SetName(TName &value)

Assign a value to Name data member.

void SetNames(TNames &value)

Assign a value to Names data member.

bool IsSetLocus_tag(void) const

systematic gene name (e.g., MI0001, ORF0069) Check if a value has been assigned to Locus_tag data mem...

bool IsSetLocus(void) const

Official gene symbol Check if a value has been assigned to Locus data member.

const TLocus_tag & GetLocus_tag(void) const

Get the Locus_tag member data.

const TLocus & GetLocus(void) const

Get the Locus member data.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetType(void) const

type of object within class Check if a value has been assigned to Type data member.

void SetInitials(const TInitials &value)

Assign a value to Initials data member.

void ResetInitials(void)

Reset Initials data member.

const TInitials & GetInitials(void) const

Get the Initials member data.

void ResetFirst(void)

Reset First data member.

void SetLast(const TLast &value)

Assign a value to Last data member.

void SetFirst(const TFirst &value)

Assign a value to First data member.

bool IsSetInitials(void) const

first + middle initials Check if a value has been assigned to Initials data member.

TData & SetData(void)

Assign a value to Data data member.

const TStr & GetStr(void) const

Get the variant data.

void SetSuffix(const TSuffix &value)

Assign a value to Suffix data member.

void SetType(TType &value)

Assign a value to Type data member.

const TType & GetType(void) const

Get the Type member data.

const TFirst & GetFirst(void) const

Get the First member data.

bool IsSetFirst(void) const

Check if a value has been assigned to First data member.

EType

type of RNA feature

@ eType_ncRNA

non-coding RNA; subsumes snRNA, scRNA, snoRNA

bool IsProt(void) const

Check if variant Prot is selected.

const TLocation & GetLocation(void) const

Get the Location member data.

bool IsGene(void) const

Check if variant Gene is selected.

const TData & GetData(void) const

Get the Data member data.

const TGene & GetGene(void) const

Get the variant data.

const TXref & GetXref(void) const

Get the Xref member data.

void ResetXref(void)

Reset Xref data member.

list< CRef< CSeqdesc > > Tdata

TUser & SetUser(void)

Select the variant.

@ e_User

user defined object

@ e_Molinfo

info on the molecule and techniques

@ e_Source

source of materials, includes Org-ref

const GenericPointer< typename T::ValueType > T2 value

Miscellaneous common-use basic types and functionality.

SIZE_TYPE FindWithOptions(const string &str, const string &pattern, SIZE_TYPE start_search, bool case_insensitive, bool whole_word)

static const char delimiter[]

#define ERASE_SEQDESC_ON_BIOSEQ(Itr, Var)

ERASE_SEQDESC_ON_BIOSEQ.

#define EDIT_EACH_SEQDESC_ON_BIOSEQ(Itr, Var)

#define ERASE_SEQFEATXREF_ON_SEQFEAT(Itr, Var)

ERASE_SEQFEATXREF_ON_SEQFEAT.

#define EDIT_EACH_SEQFEATXREF_ON_SEQFEAT(Itr, Var)

bool RemoveOldName(objects::CBioSource &src)

bool RemoveTaxId(objects::CBioSource &src)

@ eExistingText_append_semi

@ eExistingText_append_space

@ eExistingText_prefix_colon

@ eExistingText_append_none

@ eExistingText_leave_old

@ eExistingText_prefix_none

@ eExistingText_prefix_space

@ eExistingText_append_colon

@ eExistingText_prefix_comma

@ eExistingText_append_comma

@ eExistingText_prefix_semi

@ eExistingText_replace_old

bool AddValueToString(string &str, const string &value, EExistingText existing_text)

Add text to an existing string, using the "existing_text" directive to combine new text with existing...

Template structure SStaticPair is simlified replacement of STL pair<> Main reason of introducing this...

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4