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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__rmv__itemdata_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/macro_rmv_itemdata.cpp Source File

41 #include <wx/msgdlg.h> 66  bool

modified = (new_target !=

m_Target

);

75  string

descr =

"Remove "

;

77

descr +=

"publication "

;

88  if

(field.empty())

return function

;

92  if

(field ==

"author name list"

) {

93  function

= CMacroFunction_RemovePubAuthors::GetFuncName() +

"();"

;

95  else if

(field ==

"author middle initials"

) {

96  string

rt_var =

"obj"

;

99  function

+= CMacroFunction_RemovePubAuthorMI::GetFuncName();

100  function

+=

"("

+ rt_var +

");"

;

101

}

else if

(field !=

"date"

) {

107  function

+=

"("

+ rt_var +

");"

;

112  string

rt_var =

"obj"

;

115  if

(

function

.

empty

()) {

117  function

+=

"(\""

+ path +

"\");"

;

121  function

+=

"("

+ rt_var +

");"

;

126  bool

found_constraint =

false

;

129  function

+=

"("

+ rt_var +

");"

;

133  function

+=

"(\""

+ path +

"\");"

;

144

funcs.reserve(funcs.size() + pub_fncs.size() + 2);

145

funcs.push_back(CMacroFunction_RemovePubAuthors::GetFuncName());

146

funcs.push_back(CMacroFunction_RemovePubAuthorMI::GetFuncName());

147

funcs.insert(funcs.end(), pub_fncs.begin(), pub_fncs.end());

150

funcs.push_back(CMacroFunction_Resolve::GetFuncName());

165  bool

modified = (new_target !=

m_Target

);

175  if

(field.empty())

return function

;

180  string

rt_var =

"obj"

;

183  if

(

function

.

empty

()) {

185  function

+=

"(\""

+ path +

"\");"

;

189  function

+=

"("

+ rt_var +

");"

;

193  function

= CMacroFunction_RemoveDescriptor::GetFuncName() +

"();"

;

218  x_LoadPanel

(parent, CMacroFunction_RemoveModifier::GetFuncName(), args);

226  string

descr =

"Remove "

;

230

descr +=

"location"

;

252  if

(field_name ==

"dbxref"

) {

253  string

rt_var =

"obj"

;

255  if

(

function

.

empty

()) {

257  function

+=

"(\"org.db\");"

;

261  function

+=

"("

+ rt_var +

");"

;

265  string

rt_var =

"obj"

;

266  bool

found_constraint =

false

;

269  auto

pos = field_name.find_last_of(

'-'

);

270  function

+= CMacroFunction_RemoveSubfield::GetFuncName();

271  function

+=

"("

+ rt_var +

", \""

+ field_name.substr(pos + 1) +

"\");"

;

274  if

(path.find(

','

) !=

NPOS

) {

275

vector<string> tokens;

280  string

rt_var =

"obj_bsrc"

;

283  function

+= CMacroFunction_RemoveModifier::GetFuncName();

284  function

+=

"("

+ rt_var +

");"

;

288  function

+=

"(\""

+ path +

"\");"

;

298

CMacroFunction_RemoveSubfield::GetFuncName(), CMacroFunction_RemoveModifier::GetFuncName() };

328  string

rt_var =

"obj"

;

331  function

+=

"("

+ rt_var +

");"

;

374  string

rt_var =

"obj"

;

377  if

(

function

.

empty

()) {

379  function

+=

"(\""

+ path +

"\");"

;

383  function

+=

"("

+ rt_var +

");"

;

388  function

+=

"(\""

+ path +

"\");"

;

397  return

{ CMacroFunction_Resolve::GetFuncName(),

399

CMacroFunction_UpdatemRNAProduct::GetFuncName()

426  bool

modified = (new_target !=

m_Target

);

447  string

rt_var =

"obj"

;

452  if

(

function

.

empty

()) {

454  function

+=

"(\""

+ path +

"\");"

;

458  function

+=

"("

+ rt_var +

");"

;

461  else if

(path.find(

','

) !=

NPOS

) {

462

vector<string> tokens;

473  function

+= CMacroFunction_RemoveSubfield::GetFuncName();

481  else if

(path ==

"dbxref"

) {

483  if

(!

function

.

empty

()) {

500  return

{ CMacroFunction_Resolve::GetFuncName(),

502

CMacroFunction_UpdatemRNAProduct::GetFuncName(),

503

CMacroFunction_RemoveSubfield::GetFuncName()

534  bool

modified = (new_target !=

m_Target

);

542  string

descr =

"Remove"

;

566  function

= CMacroFunction_RmvRelFeatQual::GetFuncName();

567  function

+=

"(\"gene\", "

+ gene_field +

");"

;

574  if

(path.find(

','

) !=

NPOS

) {

575

vector<string> tokens;

579  string

rt_var =

"obj"

;

583  function

+=

"("

+ rt_var +

");"

;

585  else if

(path.find(

"::"

) !=

NPOS

) {

586  function

= CMacroFunction_RemoveRnaProduct::GetFuncName() +

"();"

;

590  function

+=

"(\""

+ path +

"\");"

;

600

CMacroFunction_RemoveRnaProduct::GetFuncName(),

601

CMacroFunction_RmvRelFeatQual::GetFuncName(),

602

CMacroFunction_Resolve::GetFuncName() };

644  bool

modified = (

m_Target

!= new_target);

661  string

new_constraint = CMacroFunction_ChoiceType::GetFuncName();

662

new_constraint +=

"() = \""

+ path +

"\""

;

663

constraints.insert(constraints.begin(), make_pair(

""

, new_constraint));

666  return

CMacroFunction_RemoveDescriptor::GetFuncName() +

"();"

;

671  return

{ CMacroFunction_RemoveDescriptor::GetFuncName() };

683  x_LoadPanel

(parent, CMacroFunction_RemoveFeature::GetFuncName(), args);

693  bool

modified = (

m_Target

!= new_target);

702

descr +=

" and the overlapping genes"

;

727  string

func = CMacroFunction_RemoveFeature::GetFuncName() +

"("

;

757  string

descr =

"Remove duplicate "

;

761

descr +=

" features"

;

764

descr +=

" (check partials)"

;

767  if

(descr.find(

"partials"

) !=

NPOS

) {

770

descr +=

" (case sensitive)"

;

773

descr +=

" and remove protein products"

;

792  string function

= CMacroFunction_RemoveDuplFeatures::GetFuncName();

800  return

{ CMacroFunction_RemoveDuplFeatures::GetFuncName() };

823  bool

modified = (

m_Target

!= new_target);

833

descr =

"Remove all "

;

836

descr =

"Remove illegal "

;

841

descr +=

" and copy their values to note"

;

858  string

path =

"dbxref"

, rt_var =

"obj"

;

859  string function

= rt_var +

" = "

+ CMacroFunction_Resolve::GetFuncName() +

"(\""

+ path +

"\")"

;

860  function

+=

" WHERE "

+ CMacroFunction_IllegalDbXref::GetFuncName() +

"("

+ rt_var +

")"

;

863

TConstraints::iterator it = constraints.

begin

();

864  while

(it != constraints.end()) {

865  if

(it->second.find(path) !=

NPOS

) {

867  function

+=

" AND "

+ it->second;

868

it = constraints.erase(it);

877  function

+=

"("

+ rt_var +

", \"comment\", \"eAppend\", \";\");\n"

;

887

CMacroFunction_Resolve::GetFuncName(),

910  m_Panel

->SetControlValues(

m_Args

[0]->GetName(), fieldnames);

915  return "Remove organism name from "

+

m_Args

[0]->GetValue();

922  if

(path.find(

','

) !=

NPOS

) {

923

vector<string> tokens;

926  string

rt_var =

"obj"

;

EMacroFieldType m_FieldType

for actions such as appply/edit/etc.

vector< string > x_GetPubFunctions() const

static bool s_IsGeneQualifier(const string &field)

vector< string > GetFeatureTypes(bool for_removal=false, bool to_create=false, bool include_all=false) const

vector< string > GetRNATypes() const

string GetAsnPathToFieldName(const string &field, EMacroFieldType type, const string &target=kEmptyStr)

vector< string > GetncRNAClassTypes(bool include_any=true) const

static CMacroEditorContext & GetInstance()

vector< string > GetFeatQualifiers() const

const vector< string > & GetBsrcKeywords() const

vector< string > GetFieldNames(EMacroFieldType type) const

@ ePubFieldType_AuthorMiddleInitial

virtual vector< string > GetMainFunctions() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

CRemoveDbXrefTreeItemData()

virtual bool UpdateTarget()

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

CRemoveDescrTreeItemData()

virtual bool UpdateTarget()

virtual string GetMacroDescription() const

virtual string GetMacroDescription() const

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual string GetVariables()

CRemoveDuplFeatsTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

CRemoveFeatureTreeItemData()

virtual bool UpdateTarget()

virtual vector< string > GetFunctionNames() const

virtual string GetVariables()

virtual bool HasVariables() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetMacroDescription() const

virtual string GetMacroDescription() const

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

CRmvBsrcQualTreeItemData()

virtual const vector< string > & GetKeywords() const

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

virtual bool UpdateTarget()

CRmvFeatQualTreeItemData()

virtual string GetMacroDescription() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual bool UpdateTarget()

virtual string GetFunction(TConstraints &constraints) const

CRmvMiscQualTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual string GetMacroDescription() const

CRmvOrgNameTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual string GetMacroDescription() const

virtual string GetFunction(TConstraints &constraints) const

CRmvProteinQualTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

CRmvQualTreeItemData(const string &description, EMacroFieldType type)

virtual bool UpdateTarget()

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

CRmvRNAQualTreeItemData()

virtual string GetMacroDescription() const

virtual bool UpdateTarget()

CRmvStrCommQualTreeItemData()

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual string GetMacroDescription() const

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

void x_LoadPanel(wxWindow *parent, const string &panel_name, const TArgumentsVector &arguments)

unique_ptr< CMacroPanelLoader > m_Panel

constructed panel for specifying function arguments

vector< pair< string, string > > TConstraints

bool Empty(const CNcbiOstrstream &src)

static const char * sm_Seqdesc

static const char * sm_BioSource

static CTempString GetFuncName()

bool IsStructVoucherPart(const string &field)

static const char * sm_DBLink

static CTempString GetFuncName()

static const char * sm_Pubdesc

static CTempString GetFuncName()

static const char * sm_UserObject

static const char * sm_StrComm

bool IsSatelliteSubfield(const string &field)

bool IsMobileElementTSubfield(const string &field)

static const char * sm_MolInfo

static CTempString GetFuncName()

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

const_iterator begin() const

Return an iterator to the string's starting position.

vector< macro::SArgMetaData > TArgumentsVector

CTempString UpdateTargetForFeatures(const string &feature, const string &qualifier, bool for_removal=false)

string GetResolveFuncForDBLink(const string &field, string &rt_var, TConstraints &constraints, bool &found_constraint)

string GetResolveFuncForDbXref(const string &path, const string &rt_var, TConstraints &constraints)

void OnIllegalDbXrefSelected(CArgumentList &list, CArgument &arg)

void OnStructCommFieldChanged(CArgumentList &list, CArgument &arg)

bool MultipleValuesAllowed(const string &field)

void UpdateConstraintsForFeatures(TConstraints &constraints, const string &feature)

string GetStructCommQualDescr(const CArgumentList &arg_list)

string GetResolveFuncForSVPart(const string &field, const string &rt_var, TConstraints &constraints, bool &found_constraint)

CTempString UpdateTargetForMisc(const string &fieldname)

string GetResolveFuncForMultiValuedQual(const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint)

string GetResolveFuncForQual(const string &container, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint=true)

Generates the definition of rt_var based on input "field".

string GetUpdatemRNADescription(const CArgument &arg)

void OnProteinNameSingle(CArgumentList &list, CArgument &arg)

CTempString UpdateTargetForMolinfo(const string &molinfo_type)

string GetResolveFuncForGeneQuals(const string &container, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint=true)

CTempString UpdateTargetForRnas(const string &rna_type)

string GetResolveFuncForApplyAuthors(CPubFieldType::EPubFieldType type, const string &rt_var, TConstraints &constraints)

void WrapInQuotes(string &str)

string GetEditableFieldForPair(const string &field, const string &rt_var, bool is_feature)

string GetResolveFuncForStrCommQual(const string &field, const string &field_name, const string &rt_var, TConstraints &constraints)

EMacroFieldType GetSourceTypeInSinglePanel(const CArgumentList &arg_list)

void OnRnaTypeChanged(CArgumentList &list, CArgument &arg)

void UpdateConstraintsForRnas(TConstraints &constraints, const CArgumentList &arg_list)

void UpdateConstraintsForMisc(TConstraints &constraints, const string &fieldname, const string &target)

void OnSelectFeature(CArgumentList &list, CArgument &arg)

string GetResolveFuncForPubQual(const string &field, string &rt_var, TConstraints &constraints)

void AppendUpdatemRNAFnc(bool update_mrna, string &function)

const TArgumentsVector & GetSetArgs()

const TArgumentsVector & GetRmvDbxrefArgs()

const string kRmvOverlapGene

const TArgumentsVector & GetOptionalArgs()

const TArgumentsVector & GetRmvDuplFeaturesArgs()

const string kCheckPartials

const TArgumentsVector & GetBsrcArgs()

const string kRemoveProteins

const string kStrCommField

constexpr bool empty(list< Ts... >) noexcept

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