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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__general__itemdata_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/macro_general_itemdata.cpp Source File

+=

;

+=

;

vector<string> fields{

,

,

};

+

[0]->GetValue() +

;

rt_var =

;

+

[

].GetValue() +

;

(path.find(

) !=

) {

vector<string> tokens;

rt_var =

;

+= CMacroFunction_FixSourceQualCaps::GetFuncName() +

+ rt_var +

;

{ CMacroFunction_Resolve::GetFuncName(), CMacroFunction_FixSourceQualCaps::GetFuncName() };

rt_var =

;

+= CMacroFunction_FixMouseStrain::GetFuncName() +

(

+ rt_var +

);

{ CMacroFunction_Resolve::GetFuncName(), CMacroFunction_FixMouseStrain::GetFuncName() };

descr =

;

descr +=

;

descr +=

;

descr +=

;

descr +=

;

rt_var =

;

+=

+ rt_var +

+

+

;

+= CMacroFunction_FixAuthorCaps::GetFuncName();

+=

+ rt_var +

;

(parent, CMacroFunction_RetranslateCDS::GetFuncName(), args);

CMacroFunction_RetranslateCDS::GetFuncName() +

+

+

;

{ CMacroFunction_RetranslateCDS::GetFuncName() };

(parent, CMacroFunction_RestoreRNAEditing::GetFuncName(), args);

CMacroFunction_RestoreRNAEditing::GetFuncName() +

+

+

;

{ CMacroFunction_RestoreRNAEditing::GetFuncName() };

= CMacroFunction_UpdateReplacedECNumbers::GetFuncName();

{ CMacroFunction_UpdateReplacedECNumbers::GetFuncName() };

(parent, CMacroFunction_AddGeneXref::GetFuncName(), args);

modified = (

!= new_target);

+

[

].GetValue() +

;

CMacroFunction_AddGeneXref::GetFuncName() +

;

{ CMacroFunction_AddGeneXref::GetFuncName() };

modified = (

!= new_target);

descr =

;

(suppr_type !=

) {

descr +=

+ suppr_type;

(necess_type !=

) {

descr +=

+ necess_type;

= dlg_type;

(

.find(

) !=

) {

descr +=

;

constraints.emplace_back(

, new_constraint);

constraints.emplace_back(

, CMacroFunction_InconsistentTaxa::GetFuncName() +

(

));

vector<string> s_test_names;

(s_test_names.empty()) {

s_test_names.reserve(

.size());

(

tn :

) {

descr =

;

descr +=

.front()->GetValue();

descr +=

;

= 0;

(!variables.empty()) {

+= CMacroFunction_DiscrepancyAutofix::GetFuncName() +

;

+= CMacroFunction_DiscrepancyAutofix::GetFuncName();

(!

.

()) {

+= CMacroFunction_DiscrepancyAutofix::GetFuncName();

{ CMacroFunction_DiscrepancyAutofix::GetFuncName() };

descr =

;

is_complete =

;

descr +=

;

misc_feat_rule =

;

misc_feat_rule =

;

(misc_feat_rule !=

) {

descr +=

+ misc_feat_rule;

misc_feat_rule =

;

misc_feat_rule =

;

variables +=

+

+ misc_feat_rule +

;

is_complete =

;

vector<string> modifiers;

(!modifiers.empty()) {

(

& it : modifiers) {

+=

+ it +

;

:

(

)

(parent, CMacroFunction_ConvertRawToDeltabyNs::GetFuncName(), args);

descr =

;

is_assembly_gap =

;

gap_type, linkage, linkage_evidence;

(!is_assembly_gap) {

descr +=

+ gap_type +

;

(!linkage.empty()) {

descr +=

+ linkage +

;

descr +=

;

(!linkage_evidence.empty()) {

descr +=

+ linkage_evidence +

;

descr +=

;

descr +=

;

descr +=

;

linkage_evidence = -1;

= CMacroFunction_ConvertRawToDeltabyNs::GetFuncName();

+=

+ gap_vars.front();

(

index = 1; index < gap_vars.size(); ++index) {

+=

+ gap_vars[index];

{ CMacroFunction_ConvertRawToDeltabyNs::GetFuncName() };

& args =

.front().m_FArgs;

(

exception&) {

(

exception&) {

(parent, CMacroFunction_AddGapFeaturesByNs::GetFuncName(), args);

descr =

;

is_assembly_gap =

;

gap_type, linkage, linkage_evidence;

(is_assembly_gap) {

descr +=

;

descr +=

;

= CMacroFunction_AddGapFeaturesByNs::GetFuncName();

+=

+ gap_vars.front();

(

index = 1; index < 6; ++index) {

+=

+ gap_vars[index];

{ CMacroFunction_AddGapFeaturesByNs::GetFuncName() };

is_refseq =

;

modified = (new_target !=

);

descr =

;

descr +=

;

feat_product[0] =

((

)feat_product[0]);

descr +=

+ feat_product;

feat_product[0] =

((

)feat_product[0]);

new_constraint +=

;

new_constraint =

+ new_constraint;

constraints.emplace_back(

+ feat_product, new_constraint);

+=

;

+=

+

+

;

+=

;

+

[

].GetValue() +

;

CMacroFunction_ToUnknownLengthGap::GetFuncName() +

+

+

;

{ CMacroFunction_ToUnknownLengthGap::GetFuncName() };

;

(filename.empty())

+=

+ filename +

;

(it != fn.m_FArgs.end()) {

User-defined methods of the data storage class.

static const char * kGapType

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

virtual string GetVariables()

CAddAssemblyGapsNTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetVariables()

virtual string GetMacroDescription() const

virtual string GetFunction(TConstraints &constraints) const

virtual string GetMacroDescription() const

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

CAddGeneXrefTreeItemData(const string &description)

virtual bool UpdateTarget()

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetVariables()

virtual string GetFunction(TConstraints &constraints) const

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetMacroDescription() const

CConvertClassTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetVariables()

virtual string GetMacroDescription() const

CConvertGapsTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

CDiscrepancyAutofixTreeItemData(const string &description)

CDiscrepancyAutofixTreeItemData.

virtual string GetMacroDescription() const

vector< string > m_TestVars

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual string GetVariables()

virtual void x_AddParamPanel(wxWindow *parent)

CFixCapsLastNameTreeItemData(const string &description)

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

CFixMouseStrainTreeItemData(const string &description)

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

CTempString x_GetFncName() const

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

CFixPrimerTreeItemData(const string &description, bool fixI)

virtual string GetFunction(TConstraints &constraints) const

CFixPubCapsTreeItemData(const string &description, EMacroFieldType type)

virtual string GetVariables()

virtual string GetMacroDescription() const

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetMacroDescription() const

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

CFixSrcQualsTreeItemData(const string &description)

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetMacroDescription() const

CFixSubsrcFormatTreeItemData(const string &description)

EMacroFieldType m_FieldType

for actions such as appply/edit/etc.

vector< string > x_GetPubFunctions() const

vector< string > GetFeatureTypes(bool for_removal=false, bool to_create=false, bool include_all=false) const

string GetAsnPathToFieldName(const string &field, EMacroFieldType type, const string &target=kEmptyStr)

static CMacroEditorContext & GetInstance()

vector< string > GetFieldNames(EMacroFieldType type) const

string GetFilename() const

void SetFilename(const string &fname)

@ ePubFieldType_AffilCountry

static string GetLabelForType(EPubFieldType field_type)

void SetKeepGapLength(bool value)

bool GetAdjustCDS() const

void GetMinMax(long &min_known, long &max_known, long &min_unknown, long &max_unknown)

void SetAssemblyParams(bool is_assembly_gap, const string &gap_type, const string &linkage, const string &linkage_evidence)

bool GetKeepGapLength() const

void SetMinMax(const long min_known, const long max_known, const long min_unknown, const long max_unknown)

void SetAdjustCDS(bool value)

void GetAssemblyParams(bool &is_assembly_gap, int &gap_type, int &linkage, int &linkage_evidence)

virtual bool UpdateTarget()

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

CRemoveGeneXrefTreeItemData(const string &description)

virtual string GetVariables()

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

string x_TranslateType(const string &dlg_type) const

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual string GetVariables()

CRestoreRNAEditingTreeItemData(const string &description)

virtual void x_AddParamPanel(wxWindow *parent)

CRetranslateCDSTreeItemData(const string &description)

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetVariables()

static vector< string > GetListOfLegalExceptions(bool include_refseq)

Produces the list of legal exceptions.

virtual vector< string > GetFunctionNames() const

virtual string GetVariables()

CSetExceptionsTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

virtual bool UpdateTarget()

virtual string GetMacroDescription() const

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

bool SetData(const vector< CFuncWithArgs > &func_info)

virtual vector< string > GetFunctionNames() const

CMacroUpdProteinPanel * m_UpdateProtPanel

CUpdateProteinsTreeItemData()

virtual string GetMacroDescription() const

virtual vector< string > GetFunctionNames() const

virtual string GetVariables()

CUpdateReplacedECTreeItemData(const string &description)

virtual string GetMacroDescription() const

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

CRawSeqToDeltaByNPanel * m_RawSeqToDeltaPanel

bool m_WithAssemblyParams

bool SetData(const vector< CFuncWithArgs > &func_info)

void x_LoadPanel(wxWindow *parent, const string &panel_name, const TArgumentsVector &arguments)

unique_ptr< CMacroPanelLoader > m_Panel

constructed panel for specifying function arguments

vector< pair< string, string > > TConstraints

eTestNames GetDiscrepancyCaseName(string_view)

TTestNamesSet GetDiscrepancyTests(TGroup group)

bool Empty(const CNcbiOstrstream &src)

static DbTestEntry * tests

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static const char * sm_Equal

static CTempString GetFuncName()

static CTempString GetFuncName()

static const char * sm_PubAuthors

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

#define ENUM_METHOD_NAME(EnumName)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StringToBool(const CTempString str)

Convert string to bool.

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static string Int8ToString(Int8 value, TNumToStringFlags flags=0, int base=10)

Convert Int8 to string.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static const string BoolToString(bool value)

Convert bool to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static long StringToLong(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to long.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

vector< macro::SArgMetaData > TArgumentsVector

Functions used in the DO/DONE section affecting the top seq-entry.

@ eAddGapFeaturesByNPanel

string GetResolveFuncForPubQualConst(const string &field, const string &rt_var, TConstraints &constraints, EMacroFieldType field_type)

CTempString UpdateTargetForFeatures(const string &feature, const string &qualifier, bool for_removal=false)

void UpdateConstraintsForFeatures(TConstraints &constraints, const string &feature)

string GetResolveFuncForQual(const string &container, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint=true)

Generates the definition of rt_var based on input "field".

void OnAutodefCompleteSelected(CArgumentList &list, CArgument &arg)

string GetResolveFuncForPubQual(const string &field, string &rt_var, TConstraints &constraints)

void OnMiscFeatRuleSelected(CArgumentList &list, CArgument &arg)

const vector< string > & GetAddAssemblyGapsNArgs()

const TArgumentsVector & GetUpdateRpldECNumbersArgs()

const string kWhereFeatProduct

const TArgumentsVector & GetRemoveGeneXrefArgs()

const string kMiscFeatRule

const string kExceptionType

const TArgumentsVector & GetSetArgs()

const string kListFeatRule

const string kProteinName

const string kAutodefCompl

const string kLinkEvidence

const string kKeepGapLength

const TArgumentsVector & GetSetExceptionArgs()

const string kSuppressingType

const TArgumentsVector & GetFixPubCapsArgs()

const string kDelMultRepl

const string kNecessaryType

const TArgumentsVector & GetAutodefArgs()

const TArgumentsVector & GetOptionalArgs()

const TArgumentsVector & GetDiscrReportArgs()

const TArgumentsVector & GetConvertSetArgs()

const string kSourceField

const string kDelImproper

const string kMoveExplanation

const string kObeyStopCodon

constexpr bool empty(list< Ts... >) noexcept

C++ wrappers for the Perl-compatible regular expression (PCRE) library.

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