Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__fn__where_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/macro_fn_where.cpp Source File

Ncbi_library_version_mismatch__Full_rebuild_to_fix_20200522

void CMacroFunction_ChoiceType::TheFunction()

(!m_Args.empty()) {

field_name = m_Args[0]->GetString();

(m_DataIter->GetChoiceType(field_name, choice_type)) {

m_Result->SetString(choice_type);

CMacroFunction_ChoiceType::x_ValidArguments()

(m_Args.empty() || (m_Args.size() == 1 && m_Args[0]->IsString()));

(

[index]->IsNotSet()) {

(

[index]->IsRef()) {

(

[index]->IsString()) {

(

[index]->AreObjects()) {

rval = !res_oi.empty();

(

& it : res_oi) {

= it.field.GetPrimitiveValueString();

(

[index]->AreStrings()) {

rval = !

[index]->GetStrings().empty();

cont_element = (

.size() == 2);

field_name =

[index]->GetString();

container = field_name;

field_name =

[++index]->GetString();

(

(field_name) || (cont_element && container.empty()))

as =

.size();

(as != 1 && as != 2)

first_ok =

[index]->IsString() ||

[index]->AreObjects() ||

[index]->IsNotSet() ||

[index]->IsRef();

(

&& it :

) {

(res_oi.empty()) {

(elem.

()) {

objInfo(&molinfo, molinfo.GetTypeInfo());

(

.size() == 1) {

(

& it :

) {

(!it->IsString()) {

CMacroFunction_GetDBLink::TheFunction()

field_type = m_Args[0]->GetString();

& user = desc_it->GetUser();

(user.GetType().IsStr() && user.GetType().GetStr() ==

) {

(const_user_field) {

objInfo(&user_field, user_field.GetTypeInfo());

x_AssignReturnValue(objInfo,

);

x_AssignReturnValue(objInfo,

);

CMacroFunction_GetDBLink::x_ValidArguments()

(m_Args.size() == 1 && m_Args[0]->IsString());

(

.size() == 1 &&

[0]->IsString());

void CMacroFunction_RelatedFeatures::TheFunction()

field_name = m_Args[1]->GetString();

(m_Args.size() == 3) {

container = field_name;

field_name = m_Args[2]->GetString();

scope = m_DataIter->GetScopedObject().scope;

(!feat || !scope) {

NMacroUtil::TVecFeatList::iterator it = feat_list.begin();

(!feat_list.empty()) {

objInfo(related_feat.GetPointer(), related_feat.GetPointer()->GetTypeInfo());

(container.empty()) {

x_AssignReturnValue(objInfo, field_name);

x_AssignReturnValueFromContainer(objInfo, container, field_name);

CMacroFunction_RelatedFeatures::x_ValidArguments()

(m_Args.size() != 2 && m_Args.size() != 3) {

(

& it : m_Args) {

(!it->IsString()) {

void CMacroFunction_Features_For_Object::TheFunction()

container = (++index < m_Args.size()) ? m_Args[index]->GetString() :

;

field_name = (++index < m_Args.size()) ? m_Args[index]->GetString() :

;

(m_Args.size() != 3) {

field_name = container;

scope = m_DataIter->GetScopedObject().scope;

(m_Args.size() == 3) {

x_AssignReturnValueFromContainer(objInfo, container, field_name);

x_AssignReturnValue(objInfo, field_name);

CMacroFunction_Features_For_Object::x_ValidArguments()

(m_Args.empty() || m_Args.size() > 3) {

(

& it : m_Args) {

res_oi =

[0]->GetObjects();

(res_oi.empty()) {

void CMacroFunction_CDSTranslation::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

(prot_seq.empty()) {

(m_Nested == eNotNested) {

m_Result->SetString(prot_seq);

new_node->SetString(prot_seq);

m_Result->SetRef(new_node);

CMacroFunction_CDSTranslation::x_ValidArguments()

(m_Args.empty());

void CMacroFunction_SeqID::TheFunction()

m_Result->SetNotSet();

vector<string> id_labels;

(bssh && bssh.

() && bssh.

() == objects::CBioseq_set::eClass_nuc_prot) {

m_Result->SetStrings(id_labels);

CMacroFunction_SeqID::x_ValidArguments()

m_Args.empty();

(

& it : bseq.

()) {

id_labels.push_back(

);

(it->IsLocal() && local_id.empty()) {

(it->IsGeneral() && it->GetGeneral().IsSetDb() && it->GetGeneral().GetDb() ==

) {

id_labels.push_back(

+

);

pos =

.find(

);

prefix =

.substr(0, pos);

id_labels.push_back(

+ prefix);

id_labels.push_back(prefix);

pos =

.find(

);

id_labels.push_back(

);

(it->IsGenbank()) {

id_labels.push_back(

);

void CMacroFunction_Accession::TheFunction()

m_Result->SetNotSet();

m_Result->SetString(acc);

(

<<

<< e.

());

CMacroFunction_Accession::x_ValidArguments()

m_Args.empty();

void CMacroFunction_InconsistentTaxa::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

(!seqset || !scope) {

taxname, first_taxname;

is_first(

), inconsistent(

);

(desc->GetSource().IsSetTaxname()) {

taxname = desc->GetSource().GetTaxname();

(feat_it && feat_it->GetData().GetBiosrc().IsSetTaxname()) {

taxname = feat_it->GetData().GetBiosrc().GetTaxname();

first_taxname = taxname;

inconsistent =

;

m_Result->SetBool(inconsistent);

CMacroFunction_InconsistentTaxa::x_ValidArguments()

(m_Args.empty());

void CMacroFunction_StringLength::TheFunction()

res_oi = m_Args[0]->GetObjects();

x_GetObjectsFromRef(res_oi, 0);

(res_oi.empty()) {

(elem.

()) {

CMacroFunction_StringLength::x_ValidArguments()

(m_Args.size() == 1 && (m_Args[0]->IsString() || m_Args[0]->AreObjects() || m_Args[0]->IsRef()));

void CMacroFunction_StructCommField::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

& field_name = m_Args[0]->GetString();

m_Result->SetNotSet();

x_AssignReturnValue(objInfo,

);

search_depth = 0;

x_AssignReturnValue(objInfo,

);

CMacroFunction_StructCommField::x_ValidArguments()

(m_Args.size() == 1 && m_Args[0]->IsString());

void CMacroFunction_StructCommDatabase::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

m_Result->SetNotSet();

(m_Nested == eNotNested) {

m_Result->SetString(prefix);

new_node->SetString(prefix);

m_Result->SetRef(new_node);

search_depth = 0;

vector<string> dbnames;

dbnames.push_back(prefix);

(!dbnames.empty()) {

(m_Nested == eNotNested) {

m_Result->SetStrings(dbnames);

new_node->SetStrings(dbnames);

m_Result->SetRef(new_node);

CMacroFunction_StructCommDatabase::x_ValidArguments()

m_Args.empty();

void CMacroFunction_StructCommFieldname::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

(

& it : user_obj->

()) {

(m_Nested == eNotNested) {

m_Result->AssignFromObjectInfo(objs.front().field);

m_Result->SetObjects(objs);

CMacroFunction_StructCommFieldname::x_ValidArguments()

m_Args.empty();

void CMacroFunction_GetDBXref::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

m_Result->SetNotSet();

vector<string> values;

& xref = **db_it;

db = xref.

();

values.push_back(db +

+

);

(

& db_it : src->

().

()) {

db = db_it->GetDb();

(db_it->GetTag().IsStr())

= db_it->GetTag().GetStr();

(db_it->GetTag().IsId())

values.push_back(db +

+

);

(m_Nested == eNotNested) {

m_Result->SetStrings(values);

new_node->SetStrings(values);

m_Result->SetRef(new_node);

CMacroFunction_GetDBXref::x_ValidArguments()

m_Args.empty();

CMacroFunction_InTable::TheFunction()

arg_nr = m_Args.size();

cont_element = (m_Args[3]->IsInt());

index = cont_element ? 2 : 1;

&

= m_Args[index]->GetString();

col = (

)m_Args[++index]->GetInt();

= m_Args[++index]->GetString();

merge_del = (++index < arg_nr) ? m_Args[index]->GetBool() :

;

split_firstcol = (++index < arg_nr) ? m_Args[index]->GetBool() :

;

convert_multi = (++index < arg_nr) ? m_Args[index]->GetBool() :

;

merge_firstcols = (++index < arg_nr) ? m_Args[index]->GetBool() :

;

case_sensitive = (++index < arg_nr) ? m_Args[index]->GetBool() :

;

multiple_spaces_only = (++index < arg_nr) ? m_Args[index]->GetBool() :

;

merge_del, split_firstcol, convert_multi, merge_firstcols, multiple_spaces_only);

found =

;

(m_Args[0]->AreStrings()) {

found = m_DataIter->FindInTable(m_Args[0]->GetStrings(), case_sensitive);

(m_Args[0]->IsString()) {

x_AssignReturnValueFromContainer(oi, m_Args[0]->GetString(), m_Args[1]->GetString());

res_oi = m_Result->GetObjects();

m_Result->SetNotSet();

m_Nested = eNotNested;

(m_Args[0]->AreObjects()) {

res_oi = m_Args[0]->GetObjects();

found = m_DataIter->FindInTable(res_oi, case_sensitive);

m_Result->SetBool(found);

CMacroFunction_InTable::x_ValidArguments()

arg_nr = m_Args.size();

(arg_nr < 4 && arg_nr > 11)

first_ok = m_Args[0]->IsString() ||

m_Args[0]->AreStrings() ||

m_Args[0]->AreObjects() ||

m_Args[0]->IsNotSet() ||

(!first_ok)

;

(m_Args[0]->IsRef()) {

(!m_Args[2]->IsInt() && !m_Args[3]->IsInt())

index = (m_Args[2]->IsInt()) ? 2 : 3;

(

= 1;

< index; ++

) {

(!m_Args[

]->IsString())

(!m_Args[index]->IsInt() || !m_Args[++index]->IsString())

(

= ++index;

< arg_nr; ++

) {

(!m_Args[

]->IsBool())

CMacroFunction_Contained::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

(!feat || !scope)

contained =

;

m_Result->SetBool(contained);

CMacroFunction_Contained::x_ValidArguments()

(m_Args.size() == 1 && m_Args[0]->IsString());

(start1 == stop2 + 1 || start2 == stop1 + 1) {

void CMacroFunction_IllegalDbXref::TheFunction()

scope = m_DataIter->GetScopedObject().scope;

(!feat || !scope)

& objs = m_Args[0]->GetObjects();

(objs.empty() || objs.front().field.GetName() !=

) {

m_Result->SetBool(

);

validator::CValidator::TDbxrefValidFlags

=

validator::CValidator::IsValidDbxref(*

,

,

);

non_valid =

| validator::CValidator::eValid;

m_Result->SetBool(non_valid);

CMacroFunction_IllegalDbXref::x_ValidArguments()

(m_Args.size() == 1 && m_Args[0]->AreObjects());

(

.empty())

;

inst, coll, id;

CMacroFunction_StructVoucherPart::TheFunction()

voucher_type;

voucher_part = m_Args[index]->GetString();

(m_Args[0]->IsString()) {

voucher_type = m_Args[0]->GetString();

(m_Args[0]->AreObjects()) {

res_oi = m_Args[0]->GetObjects();

(m_Args[0]->IsRef()) {

x_GetObjectsFromRef(res_oi, 0);

(voucher_type.empty() && res_oi.empty()) {

vector<string> values;

m_Result->SetNotSet();

(!voucher_type.empty()) {

orgmod = *mod_it;

(orgmod->IsSetSubtype() && orgmod->GetSubtype() == subtype && orgmod->IsSetSubname()) {

(

& it : res_oi) {

(it.field.GetPrimitiveValueString(), part, values);

(!values.empty()) {

(m_Nested == eNotNested) {

m_Result->SetStrings(values);

new_node->SetStrings(values);

m_Result->SetRef(new_node);

CMacroFunction_StructVoucherPart::x_ValidArguments()

(m_Args.size() != 2)

first_ok = m_Args[0]->IsString() || m_Args[0]->AreObjects() || m_Args[0]->IsRef();

first_ok && m_Args[1]->IsString();

void CMacroFunction_GeneType::TheFunction()

m_Result->SetNotSet();

m_Result->SetString(

);

CMacroFunction_GeneType::x_ValidArguments()

(m_Args.empty());

void CMacroFunction_Label::TheFunction()

m_Result->SetString(

);

CMacroFunction_Label::x_ValidArguments()

(m_Args.size() == 1 && m_Args[0]->IsString());

void CMacroFunction_VariationType::TheFunction()

m_Result->SetString(var_class);

CMacroFunction_VariationType::x_ValidArguments()

m_Args.empty();

void CMacroFunction_RefAllele::TheFunction()

(alleles.empty()) {

m_Result->SetNotSet();

m_Result->SetString(alleles.front());

CMacroFunction_RefAllele::x_ValidArguments()

m_Args.empty();

void CMacroFunction_AltAlleles::TheFunction()

= m_Args[0]->GetString();

sDelimiter = (m_Args.size() == 1) ? m_Args[0]->GetString() :

;

(alleles.empty()) {

m_Result->SetNotSet();

(

= 1;

< alleles.size(); ++

) {

(!alt_allele.empty()) {

alt_allele += sDelimiter;

alt_allele += alleles[

];

m_Result->SetString(alt_allele);

CMacroFunction_AltAlleles::x_ValidArguments()

(m_Args.empty()) {

(m_Args.size() == 1 && m_Args[0]->IsString()) {

void CMacroFunction_VcfSevenCol::TheFunction()

m_Result->SetNotSet();

(

<<

<< e.

());

sResult += sAcc +

;

(dbtag && dbtag->IsSetTag()) {

&

= dbtag->GetTag();

(

.IsStr()) {

snp_id =

.GetStr();

(

.IsId()) {

(

.IsId8()) {

(!alleles.empty()) {

isUsedVarLib(

);

(!seq_id.

() && alleles.size() == 2) {

NVariation::NPrimitives::CSeqId var_seq_id(NVariation::NPrimitives::CSeqId::FromDatatoolObject(*seq_id));

NVariation::NVariant::CSpdi spdi(var_seq_id,

seq_cache(NVariation::NPrimitives::ISequenceFactory::CreateDefault(m_DataIter->GetScopedObject().scope)->GetSequence(var_seq_id,

vcf_var = NVariation::NConstructors::g_VcfFromSpdi(spdi, *seq_cache);

sResult += snp_id +

;

sResult += vcf_var.Reference() +

+ vcf_var.Alternate() +

;

isUsedVarLib =

;

(!isUsedVarLib) {

sResult += snp_id +

;

(alleles.empty()) {

sResult += alleles.front();

(alleles.size() < 2) {

(

= 1;

< alleles.size(); ++

) {

(!alt_allele.empty()) {

alt_allele += alleles[

];

sResult += alt_allele;

(!sResult.empty()) {

m_Result->SetString(sResult);

CMacroFunction_VcfSevenCol::x_ValidArguments()

m_Args.empty();

void CMacroFunction_Consequence::TheFunction()

m_Result->SetString(conseq);

CMacroFunction_Consequence::x_ValidArguments()

m_Args.empty();

void CMacroFunction_SnpID::TheFunction()

m_Result->SetNotSet();

(dbtag && dbtag->IsSetTag()) {

&

= dbtag->GetTag();

(

.IsStr()) {

snp_id =

.GetStr();

(

.IsId()) {

(

.IsId8()) {

m_Result->SetString(snp_id);

CMacroFunction_SnpID::x_ValidArguments()

m_Args.empty();

@ eExtreme_Positional

numerical value

const CBioseq & GetNucFromNucProtSet(void) const

CConstRef< CSeqdesc > GetClosestDescriptor(CSeqdesc::E_Choice choice, int *level=NULL) const

Subclass of the IQueryParseUserObject which is held as the user-defined object in each CQueryParseNod...

static TSubtype GetSubtypeValue(const string &str, EVocabulary vocabulary=eVocabulary_raw)

static bool ParseStructuredVoucher(const string &str, string &inst, string &coll, string &id)

ESubtype GetSubtype(void) const

namespace ncbi::objects::

CConstRef< CDbtag > GetNamedDbxref(const CTempString &db) const

Return a specified DB xref.

string GetGenePropertyString() const

const char * GetVariationClassString() const

CConstRef< CUser_field > GetFieldRef(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const

Return a field reference representing the tokenized key, or a NULL reference if the key doesn't exist...

CConstRef< CUser_field > GetFieldRef(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const

vector< string > TAlleles

list of alleles belonging to particular SNP a deletion is represented by a "-"

static void GetAlleles(const CMappedFeat &mapped_feat, TAlleles &Alleles)

Return list of alleles encoded in qual.

static CSnpBitfield GetBitfield(const CMappedFeat &)

Return bitfield information stored in the feature.

static const char table_name[]

static const char * str(char *buf, int n)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & GetMsg(void) const

Get message string.

static const char * sm_BsrcForSeq

void x_AssignReturnValueFromContainer(const CObjectInfo &oi, const string &container, const string &field_name)

CLabel::ELabelType NameToLabelType(const string &name)

static bool s_ContainedIn(const CSeq_loc &loc1, const CSeq_loc &loc2, CScope *scope)

static const char * sm_BsrcForSeqdesc

static const char * sm_SeqForFeat

objects::CSeqdesc::E_Choice m_SeqdescType

objects::CSeqFeatData::ESubtype GetFeatSubtype(const string &feat_type)

void x_IsContainerElementPresent(const string &container, const string &field_name)

static const char * sm_Last

CMQueryNodeValue::EType GetPrimitiveFromRef(CMQueryNodeValue &node)

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

static const char * sm_SeqForDescr

class CMacroFunction_Sequence_For_Seqdesc SEQUENCE_FOR_SEQDESC(field_name) SEQUENCE_FOR_SEQFEAT(field...

list< SResolvedField > TObs

static const char * sm_MolinfoForFeat

void Dereference()

If it is a reference it is resolved to the first non reference type in the hierarchy.

void SetDataType(EType dt)

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

void x_AssignReturnValue(const CObjectInfo &oi, const string &field_name)

Assigns value to m_Result. It is mostly useful for functions used in the WHERE clause.

static const char * sm_First

CMacroFunction_FirstItem FIRSTOF(objects) - returns the first item from the list of objects LASTOF(ob...

virtual void TheFunction()

Function implementation.

EStructVoucherPart GetSVPartFromString(const string voucher_part)

static const char * sm_BsrcForFeat

bool GetFieldsByName(CMQueryNodeValue::TObs *results, const CObjectInfo &oi_i, const string &field_name)

Resolve existing dot qualified ASN.1 name (field_name) starting from the object information instance ...

static bool s_GatherIdLabels(const CBioseq_Handle &bsh, vector< string > &id_labels)

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

virtual void TheFunction()

Function implementation.

DEFINE_MACRO_FUNCNAME(CMacroFunction_IsPresent, "ISPRESENT")

class CMacroFunction_IsPresent ISPRESENT(field_name) ISPRESENT(container, element_name)

void x_GetObjectsFromRef(CMQueryNodeValue::TObs &objects, const size_t &index)

CRef< CMQueryNodeValue > m_Result

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

virtual void TheFunction()

Function implementation.

static const char * sm_BsrcForMolinfo

class CMacroFunction_GetSeqdesc BIOSOURCE_FOR_MOLINFO(field_name) or BIOSOURCE_FOR_MOLINFO(container,...

void x_IsSimpleTypePresent(const string &field_name)

void SetObjects(const TObs &obs)

static void s_ParseValues(const string &subname, NMacroUtil::EStructVoucherPart part, vector< string > &values)

class CMacroFunction_StructVoucherPart StructVoucherPart(type|object, part)

CIRef< IMacroBioDataIter > m_DataIter

vector< CConstRef< objects::CSeq_feat > > TVecFeatList

static const char * sm_MolinfoForBsrc

virtual void TheFunction()

Function implementation.

static bool IsPseudoFeature(const objects::CSeq_feat &feat)

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

size_t TMemberIndex

Type used for indexing class members and choice variants.

virtual const CTypeInfo * GetThisTypeInfo(void) const =0

static const TObjectType * SafeCast(TTypeInfo type)

@ ePrimitiveValueString

string|char*|const char*

@ ePrimitiveValueEnum

enum

string GetSeqIdString(bool with_version=false) const

Return seqid string with optional version for text seqid type.

CConstRef< CSeq_id > GetSeqId(void) const

@ fLabel_GeneralDbIsContent

For type general, use the database name as the tag and the (text or numeric) key as the content.

@ eContent

Untagged human-readable accession or the like.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

TSeqPos GetStop(ESeqLocExtremes ext) const

CElementIterator BeginElements(void) const

Create container elements iterator.

CObjectInfo GetPointedObject(void) const

Get data and type information of object to which this type refers.

CObjectInfo GetElement(void) const

Get element data and type information.

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

TMemberIndex GetCurrentChoiceVariantIndex(void) const

Get index of currently selected choice variant.

CChoiceVariant GetCurrentChoiceVariant(void) const

Get data and type information of selected choice variant.

bool Valid(void) const

Is iterator valid.

CMemberIterator GetClassMemberIterator(TMemberIndex index) const

Create class member iterator that initially points to specified member.

ETypeFamily GetTypeFamily(void) const

Get data type family.

void GetPrimitiveValueString(string &value) const

Get string data.

CMemberIterator FindClassMember(const string &memberName) const

Find class member by its name.

Int4 GetPrimitiveValueInt4(void) const

Get data as Int4.

EPrimitiveValueType GetPrimitiveValueType(void) const

Get type of primitive value.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

Int8 TestForOverlapEx(const CSeq_loc &loc1, const CSeq_loc &loc2, EOverlapType type, CScope *scope=0, TOverlapFlags flags=fOverlap_Default)

Updated version of TestForOverlap64().

@ eOverlap_Contained

2nd contained within 1st extremes

static void Translate(const string &seq, string &prot, const CGenetic_code *code, bool include_stop=true, bool remove_trailing_X=false, bool *alt_start=NULL, bool is_5prime_complete=true, bool is_3prime_complete=true)

Translate a string using a specified genetic code.

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CBioseq_set_Handle GetBioseq_setHandle(const CBioseq_set &seqset, EMissing action=eMissing_Default)

CConstRef< CBioseq > GetCompleteBioseq(void) const

Get the complete bioseq.

TClass GetClass(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CConstRef< CBioseq_set > GetCompleteBioseq_set(void) const

Return the complete bioseq-set object.

CConstRef< CSeq_id > GetSeqId(void) const

Get id which can be used to access this bioseq handle Throws an exception if none is available.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

bool IsSetClass(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

bool IsNull(void) const THROWS_NONE

Check if pointer is null – same effect as Empty().

TObjectType & GetObject(void) const

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define USING_SCOPE(ns)

Use the specified namespace.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static string Int8ToString(Int8 value, TNumToStringFlags flags=0, int base=10)

Convert Int8 to string.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

@ eNocase

Case insensitive compare.

static const char label[]

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

const TOrg & GetOrg(void) const

Get the Org member data.

bool IsStr(void) const

Check if variant Str is selected.

const TTag & GetTag(void) const

Get the Tag member data.

bool IsStrs(void) const

Check if variant Strs is selected.

bool IsId(void) const

Check if variant Id is selected.

const TData & GetData(void) const

Get the Data member data.

const TDb & GetDb(void) const

Get the Db member data.

bool IsStr(void) const

Check if variant Str is selected.

TData & SetData(void)

Assign a value to Data data member.

const TStr & GetStr(void) const

Get the variant data.

const TLabel & GetLabel(void) const

Get the Label member data.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

TId GetId(void) const

Get the variant data.

bool IsSetDb(void) const

ids in taxonomic or culture dbases Check if a value has been assigned to Db data member.

const TDb & GetDb(void) const

Get the Db member data.

@ eSubtype_specimen_voucher

@ eSubtype_culture_collection

bool IsSetData(void) const

the specific data Check if a value has been assigned to Data data member.

bool IsCdregion(void) const

Check if variant Cdregion is selected.

const TLocation & GetLocation(void) const

Get the Location member data.

bool IsGene(void) const

Check if variant Gene is selected.

const TData & GetData(void) const

Get the Data member data.

bool IsSetDbxref(void) const

support for xref to other databases Check if a value has been assigned to Dbxref data member.

bool IsRna(void) const

Check if variant Rna is selected.

const TSource & GetSource(void) const

Get the variant data.

const TId & GetId(void) const

Get the Id member data.

const TMolinfo & GetMolinfo(void) const

Get the variant data.

@ e_User

user defined object

@ e_Molinfo

info on the molecule and techniques

@ e_Source

source of materials, includes Org-ref

@ eMol_na

just a nucleic acid

unsigned int

A callback function used to compare two keys in a database.

Functions that resolve field names described in asn format.

constexpr bool empty(list< Ts... >) noexcept

static const char delimiter[]

Utility macros and typedefs for exploring NCBI objects from seqfeat.asn.

#define FOR_EACH_ORGMOD_ON_BIOSOURCE(Itr, Var)

FOR_EACH_ORGMOD_ON_BIOSOURCE EDIT_EACH_ORGMOD_ON_BIOSOURCE.

#define FOR_EACH_DBXREF_ON_FEATURE

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4