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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__fn__seq__constr_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/macro_fn_seq_constr.cpp Source File

57  CRef<CScope>

scope = m_DataIter->GetScopedObject().scope;

63

m_Result->SetBool(

match

);

91  unsigned

num_minus = 0, num_plus = 0;

93  for

( ; feat; ++feat) {

113  switch

(strandedness) {

115  if

(num_minus > 0 && num_plus == 0)

return true

;

117  if

(num_plus > 0 && num_minus == 0)

return true

;

119  if

(num_minus > 0)

return true

;

121  if

(num_plus > 0)

return true

;

123  if

(num_minus == 0)

return true

;

125  if

(num_plus == 0)

return true

;

126  default

:

return false

;

133  return

(

m_Args

.size() == 1

135

&& !

m_Args

[0]->GetString().empty());

174  if

(feat_it->IsSetProduct()) {

static E_Choice GetTypeFromSubtype(ESubtype subtype)

@ eSubtype_bad

These no longer need to match the FEATDEF values in the C toolkit's objfdef.h.

objects::CSeqFeatData::ESubtype GetFeatSubtype(const string &feat_type)

objects::EFeature_strandedness_constraint x_GetStrandednessFromName(const string &strand_name)

static int s_GetFeatTypeCount(const objects::CBioseq_Handle &bsh, const string &feat_type)

returns the number of features of type feat_type present on the bioseq

virtual void TheFunction()

Function implementation.

CRef< CMQueryNodeValue > m_Result

bool x_Match(const objects::CBioseq_Handle &bsh, objects::EFeature_strandedness_constraint strandedness)

CIRef< IMacroBioDataIter > m_DataIter

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

DEFINE_MACRO_FUNCNAME(CMacroFunction_NumberOfFeatures, "FEATS_ON_SEQ")

class CMacroFunction_NumberOfFeatures FEATS_ON_SEQ(feature_type | "all") - returns the number of feat...

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

static const TObjectType * SafeCast(TTypeInfo type)

ENa_strand GetStrand(void) const

Get the location's strand.

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CScope & GetScope(void) const

Get scope this handle belongs to.

const CSeq_loc & GetLocation(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define USING_SCOPE(ns)

Use the specified namespace.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

EFeature_strandedness_constraint

Access to EFeature_strandedness_constraint's attributes (values, names) as defined in spec.

@ eFeature_strandedness_constraint_no_plus

@ eFeature_strandedness_constraint_at_least_one_minus

@ eFeature_strandedness_constraint_at_least_one_plus

@ eFeature_strandedness_constraint_minus_only

@ eFeature_strandedness_constraint_any

@ eFeature_strandedness_constraint_no_minus

@ eFeature_strandedness_constraint_plus_only

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

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