Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__fn__lookup_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/macro_fn_lookup.cpp Source File

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

,

((*subtype)->IsSetSubtype()

&& (*subtype)->IsSetName()) {

(note_list[

]) {

bsrc.

().SetTaxname(suggested_taxname);

(standard_taxname.empty())

submit.

(standard_taxname);

standard_taxname = name2;

submit.

(standard_taxname);

vector<CRef<COrg_ref> > rq_list;

rq_list.push_back(org);

(!reply->IsSetReply())

taxname =

->GetTaxname();

(old != taxname) {

uncultured =

;

sp =

;

spdot =

;

taxname = taxname.substr(uncultured.length());

taxname = taxname.substr(0, taxname.length() - sp.length());

taxname = taxname.substr(0, taxname.length() - spdot.length());

+ taxname + suffix;

& orig_taxname =

->GetTaxname();

(reply_orig && reply_orig->

()) {

(standard_taxname.empty())

vector<CRef<COrg_ref> > rq_list;

rq_list.push_back(org);

(reply->IsSetReply() && !reply->GetReply().empty()) {

t3reply = reply->GetReply().front();

((*subsrc)->IsSetSubtype()

((*status)->IsSetProperty()

&& (*status)->IsSetValue()

&& (*status)->GetValue().IsStr()) {

rank = (*status)->GetValue().GetStr();

(reply && reply->

()) {

is_species_level(

), force_consult(

), has_nucleomorphs(

);

(is_species_level) {

(has_species_specific_note) {

(has_universal_note) {

(has_species_specific_note) {

(has_universal_note) {

CBioSource::TSubtype::iterator subtype = bsrc.

().begin();

(subtype != bsrc.

().end()) {

erased =

;

((*subtype)->IsSetSubtype()

&& (*subtype)->IsSetName()) {

& name = (*subtype)->GetName();

(note_list[

]) {

(new_note.empty()) {

(*subtype)->SetName(new_note);

,

,

,

,

,

,

,

,

,

taxname =

->GetTaxname();

(taxname.empty())

;

bsrc.

().SetTaxname(taxname);

remove_note =

;

modified =

;

&& subtype = bsrc.

().begin();

(subtype != bsrc.

().end()) {

erased =

;

((*subtype)->IsSetSubtype()

&& (*subtype)->IsSetName()) {

& name = (*subtype)->GetName();

(note_list[

]) {

modified =

;

&& orgmod = orgMods.begin();

(orgmod != orgMods.end()) {

erased =

;

((*orgmod)->IsSetSubtype()

&& (*orgmod)->IsSetSubname()) {

& name = (*orgmod)->GetSubname();

(note_list[

]) {

orgmod = orgMods.erase(orgmod);

(orgMods.empty()) {

bsrc.

().SetOrgname().ResetMod();

void CMacroFunction_UnculturedTaxLookup::TheFunction()

(!bsrc || m_DataIter->IsFeature() || !bsrc->

()) {

orig_taxname = bsrc->

();

converted_note(

), removed_note_sp(

), removed_note_univ(

);

uncultured_taxtool.

(*bsrc, converted_note, removed_note_sp, removed_note_univ);

changed = (!

(orig_taxname, bsrc->

())) || converted_note || removed_note_sp || removed_note_univ;

m_DataIter->SetModified();

<<

<< orig_taxname <<

<< bsrc->

();

(converted_note) {

.assign(

);

(removed_note_sp) {

.assign(

);;

(removed_note_univ) {

.assign(

);

(!

.empty()) {

CMacroFunction_UnculturedTaxLookup::x_ValidArguments()

(m_Args.empty());

void CMacroFunction_CulturedTaxLookup::TheFunction()

(!bsrc || m_DataIter->IsFeature()) {

orig_taxname = bsrc->

();

removed_note(

);

m_DataIter->SetModified();

=

+ orig_taxname +

+ bsrc->

();

(!

.empty()) {

CMacroFunction_CulturedTaxLookup::x_ValidArguments()

(m_Args.empty());

const string & GetTaxname(void) const

bool IsSetOrgMod(void) const

bool IsSetTaxname(void) const

void GetTaxFlags(bool &is_species_level, bool &force_consult, bool &has_nucleomorphs) const

virtual CRef< CTaxon3_reply > SendOrgRefList(const vector< CRef< COrg_ref > > &list, COrg_ref::fOrgref_parts result_parts=COrg_ref::eOrgref_default, fT3reply_parts t3result_parts=eT3reply_default)

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

SStrictId_Tax::TId TTaxId

Taxon id type.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

bool m_RemoveNote_Sp

flag to remove species-specific note

static bool s_EditText(string &str, const string &find, const string &repl, ESearchLoc loc, bool case_sensitive, bool is_regex=false)

void CleanupForTaxnameChange(CObjectInfo oi)

bool m_RemoveNote_Univ

flag to remove universal note

static bool s_IsUnculturedName(const string &taxname)

static const char * sUnfixable[]

static bool s_CompareOrgnameLineage(CRef< objects::CT3Reply > reply, const string &lineage)

bool x_RemoveIfFoundSubSourceNote(objects::CBioSource &bsrc, const char *note_list[])

string GetSuggestedCorrection(void)

static const char * sCulturedNodes[]

class CCulturedTool

bool m_ConvertNote

flag to convert species-specific note

static bool s_OkToTaxFix(const string &taxname)

CRef< objects::CT3Reply > x_GetReply(const string &standard_taxname)

static bool s_HasSubSourceNote(const CBioSource &bsrc, const char *note_list[])

CConstRef< objects::CBioSource > m_Bsrc

CConstRef< objects::CBioSource > m_Bsrc

static string s_MakeUnculturedName(const string &taxname, const string &suffix=kEmptyStr)

void CorrectBioSource(objects::CBioSource &bsrc, bool &converted_note, bool &removed_note_sp, bool &removed_note_univ)

void CorrectBioSource(objects::CBioSource &bsrc, bool &remove_note)

bool x_CheckSuggestedFix(string &suggestion)

static bool s_IsAmbiguous(CRef< objects::CT3Reply > reply)

#define DEFINE_MACRO_FUNCNAME(CL_NAME, FN_NAME)

static string s_GetRank(CRef< objects::CT3Reply > reply)

static void s_AddEnvironmentalSample(objects::CBioSource &bsrc)

static const char * sSpeciesSpecificPrimers[]

constants used in the uncultured macro tool

static const char * sUniversalPrimers[]

map< string, CRef< objects::CT3Reply > > m_ReplyCache

void x_ConvertNote(objects::CBioSource &biosource, const char *note_list[], const string &new_note)

bool x_RemoveIfFoundOrgModNote(objects::CBioSource &bsrc, const char *note_list[])

static bool s_OrganismNotFound(CRef< objects::CT3Reply > reply)

bool x_ShouldLookupTaxname(void)

static bool s_HasTaxId(const objects::CBioSource &bsrc)

static string s_GetSuggestion(CRef< objects::CT3Reply > reply)

string x_TryRankFix(CRef< objects::CT3Reply > reply, string &name)

static const TObjectType * SafeCast(TTypeInfo type)

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

void Reset(void)

Reset reference object.

bool IsNull(void) const THROWS_NONE

Check if pointer is null – same effect as Empty().

TObjectType & GetObject(void) const

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define USING_SCOPE(ns)

Use the specified namespace.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

bool IsOssEmpty(CNcbiOstrstream &oss)

static SIZE_TYPE FindNoCase(const CTempString str, const CTempString pattern, SIZE_TYPE start, SIZE_TYPE end, EOccurrence which=eFirst)

Find the pattern in the specified range of a string using a case insensitive search.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static bool EqualCase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-sensitive equality of a substring with another string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool SplitInTwo(const CTempString str, const CTempString delim, string &str1, string &str2, TSplitFlags flags=0)

Split a string into two pieces using the specified delimiters.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

@ eNocase

Case insensitive compare.

const TSubtype & GetSubtype(void) const

Get the Subtype member data.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

list< CRef< CSubSource > > TSubtype

bool IsSetSubtype(void) const

Check if a value has been assigned to Subtype data member.

const TOrg & GetOrg(void) const

Get the Org member data.

void SetOrg(TOrg &value)

Assign a value to Org data member.

TSubtype & SetSubtype(void)

Assign a value to Subtype data member.

void ResetSubtype(void)

Reset Subtype data member.

@ eSubtype_environmental_sample

const TLineage & GetLineage(void) const

Get the Lineage member data.

bool IsSetLineage(void) const

lineage with semicolon separators Check if a value has been assigned to Lineage data member.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

void SetTaxname(const TTaxname &value)

Assign a value to Taxname data member.

list< CRef< COrgMod > > TMod

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

bool IsData(void) const

Check if variant Data is selected.

const TData & GetData(void) const

Get the variant data.

bool IsSetStatus(void) const

Check if a value has been assigned to Status data member.

const TStatus & GetStatus(void) const

Get the Status member data.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

list< CRef< CT3StatusFlags > > TStatus

bool IsError(void) const

Check if variant Error is selected.

const TError & GetError(void) const

Get the variant data.

list< CRef< CT3Reply > > TReply

const TOrg & GetOrg(void) const

Get the Org member data.

const TMessage & GetMessage(void) const

Get the Message member data.

bool IsSetMessage(void) const

Check if a value has been assigned to Message data member.

#define FOR_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

FOR_EACH_SUBSOURCE_ON_BIOSOURCE EDIT_EACH_SUBSOURCE_ON_BIOSOURCE.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4