Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__fn__loc__constr_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/macro_fn_loc_constr.cpp Source File

objs =

[0]->GetObjects();

one_partial_start =

, one_partial_stop =

;

(

&& it : objs) {

(!edit_feat || !scope)

one_based = (

.size() == 1) ?

[0]->GetBool() :

;

void CMacroFunction_LocationLength::TheFunction()

m_Result->SetNotSet();

scope = m_DataIter->GetScopedObject().scope;

(!seq_feat || !scope)

m_Result->SetInt(

);

CMacroFunction_LocationLength::x_ValidArguments()

(m_Args.empty());

void CMacroFunction_LocationStrand::TheFunction()

m_Result->SetNotSet();

m_Result->SetString(strand);

CMacroFunction_LocationStrand::x_ValidArguments()

(m_Args.empty());

void CMacroFunction_LocationStrandSymbol::TheFunction()

m_Result->SetNotSet();

m_Result->SetString(

);

m_Result->SetString(

);

m_Result->SetString(

);

m_Result->SetString(

);

CMacroFunction_LocationStrandSymbol::x_ValidArguments()

(m_Args.empty());

& location_type = m_Args[0]->GetString();

= x_Match(loc, *loc_cons);

m_Result->SetBool(

);

has_null =

;

num_intervals = 0;

(

loc_iter(loc); loc_iter; ++loc_iter) {

}

(!loc_iter.IsEmpty()) {

(num_intervals == 1) {

(num_intervals > 1 && !has_null) {

(

.size() == 1 &&

[0]->IsString());

(

.size() == 1 && !

[0]->GetString().empty()) {

bsh = sobject.

->GetBioseqHandle(*loc);

(!

(&res_oi, objInfo, field_name) || res_oi.size() != 1)

(res_oi.size() != 1)

oi = res_oi.front().field;

@ eExtreme_Positional

numerical value

@ eExtreme_Biological

5' and 3'

namespace ncbi::objects::

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

static const char * sm_Stop

static const char * sm_SeqNa

class CMacroFunction_LocationSeqType IS_SEQ_AA(["location"]) - returns true if the sequence identifie...

virtual void TheFunction()

Function implementation.

static const char * sm_PartialStart

class CMacroFunction_LocPartialTest - tests whether the location is 5'/3' partial ISPARTIALSTART() - ...

list< SResolvedField > TObs

static const char * sm_SeqAa

static const char * sm_FromStart

class CMacroFunction_LocationDistConstraint DISTFROMSTART() [>][=][<] distance DISTFROMSTOP()

static const char * sm_PartialStop

void SetDataType(EType dt)

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

virtual void TheFunction()

Function implementation.

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

bool GetFieldsByName(CMQueryNodeValue::TObs *results, const CObjectInfo &oi_i, const string &field_name)

Resolve existing dot qualified ASN.1 name (field_name) starting from the object information instance ...

static objects::CSeq_loc * s_GetLocation(const string &field_name, CIRef< IMacroBioDataIter > iter)

bool x_Match(const objects::CSeq_loc &loc, const objects::CLocation_constraint &loc_cons)

objects::ESeqtype_constraint m_Seqtype

CRef< CMQueryNodeValue > m_Result

virtual void TheFunction()

Function implementation.

#define DEFINE_MACRO_FUNCNAME(CL_NAME, FN_NAME)

static const char * sm_FromStop

virtual bool x_ValidArguments() const

Tests the number and the type of function arguments.

CIRef< IMacroBioDataIter > m_DataIter

virtual void TheFunction()

Function implementation.

static const char * sm_Start

class CMacroFunction_LocEnd Start() and Stop() - return the positional extremes of a location

CRef< objects::CScope > scope

#define ENUM_METHOD_NAME(EnumName)

static const TObjectType * SafeCast(TTypeInfo type)

bool IsPartialStart(ESeqLocExtremes ext) const

check start or stop of location for e_Lim fuzz

ENa_strand GetStrand(void) const

Get the location's strand.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

bool IsSetStrand(EIsSetStrand flag=eIsSetStrand_Any) const

Check if strand is set for any/all part(s) of the seq-loc depending on the flag.

bool IsPartialStop(ESeqLocExtremes ext) const

TSeqPos GetStop(ESeqLocExtremes ext) const

CObjectInfo GetPointedObject(void) const

Get data and type information of object to which this type refers.

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

ETypeFamily GetTypeFamily(void) const

Get data type family.

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

bool IsNucleotide(void) const

TSeqPos GetBioseqLength(void) const

bool IsProtein(void) const

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define USING_SCOPE(ns)

Use the specified namespace.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

TLocation_type GetLocation_type(void) const

Get the Location_type member data.

@ eSeqtype_constraint_prot

@ eSeqtype_constraint_nuc

@ eLocation_type_constraint_ordered

@ eLocation_type_constraint_joined

@ eLocation_type_constraint_any

@ eLocation_type_constraint_single_interval

const TLocation & GetLocation(void) const

Get the Location member data.

ENa_strand

strand of nucleic acid

E_Choice Which(void) const

Which variant is currently selected.

Functions that resolve field names described in asn format.

const GenericPointer< typename T::ValueType > T2 value

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4