A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/macro__convert__itemdata_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/edit/macro_convert_itemdata.cpp Source File

42 #include <wx/msgdlg.h> 95  bool

remove_constraint =

false

;

100  function

+=

source

.first;

101  function

+= dest.first;

113  function

+=

"("

+

source

.second +

");"

;

139  x_LoadPanel

(parent,

"ConvertStringProteinQual"

, args);

163  function

+=

source

.first;

164  function

+= dest.first;

176  function

+=

"("

+

source

.second +

");"

;

184  return

{ CMacroFunction_Resolve::GetFuncName(),

187

CMacroFunction_UpdatemRNAProduct::GetFuncName() };

201  x_LoadPanel

(parent,

"ConvertStringRNAQual"

, args);

219  bool

modified = (new_target !=

m_Target

);

227  string

descr =

"Convert"

;

245  if

(from_field.empty() || to_field.empty())

251  if

(from_field ==

"codons recognized"

)

259  string

src_feat =

"rna"

;

267  string

dest_feat =

"rna"

;

276  bool

remove_constraint =

true

;

277  string

src_var =

"src"

;

280  if

(src_feat == dest_feat && src_feat ==

"rna"

) {

283  if

(!

source

.first.empty())

284  function

+=

source

.first;

285  if

(!dest.first.empty())

286  function

+= dest.first;

300  if

(!

source

.first.empty())

301  function

+=

source

.first;

303  if

(dest_path.find(

','

) !=

NPOS

) {

304

vector<string> tokens;

308

dest_path = tokens[1];

312  function

+=

"(\""

+ src_feat +

"\", "

+

source

.second +

", \""

+ dest_feat +

"\", \""

+ dest_path +

"\", "

;

323  if

(src_feat ==

"gene"

) {

324  function

+= CMacroFunction_RmvRelFeatQual::GetFuncName();

325  function

+=

"(\"gene\", "

+

source

.second +

");"

;

329  function

+= CMacroFunction_RemoveRnaProduct::GetFuncName() +

"();"

;

333  if

(!

source

.first.empty())

336  function

+=

source

.second;

348

CMacroFunction_Resolve::GetFuncName(),

350

CMacroFunction_RemoveRnaProduct::GetFuncName(),

351

CMacroFunction_RmvRelFeatQual::GetFuncName(),

372  x_LoadPanel

(parent,

"ConvertStringProteinQual"

, args);

385  bool

modified = (new_target !=

m_Target

);

400  string

src_feat, src_field;

402  string

dest_feat, dest_field;

404  if

(src_feat != dest_feat) {

412  string

src_feat, src_field;

414  string

dest_feat, dest_field;

423  string

src_var =

"src"

;

426  if

(src_feat == dest_feat) {

429  if

(!

source

.first.empty())

430  function

+=

source

.first;

431  if

(!dest.first.empty())

432  function

+= dest.first;

447  if

(!

source

.first.empty()) {

451  function

+=

source

.second;

462  if

(!

source

.first.empty())

463  function

+=

source

.first;

465  if

(dest_path.find(

','

) !=

NPOS

) {

466

vector<string> tokens;

470

dest_path = tokens[1];

474  function

+=

"("

+

source

.second +

", \""

+ dest_feat +

"\", \""

+ dest_path +

"\", "

;

484  if

(!

source

.first.empty()) {

488  function

+=

source

.second;

498  return

{ CMacroFunction_Resolve::GetFuncName(),

501

CMacroFunction_UpdatemRNAProduct::GetFuncName(),

522  x_LoadPanel

(parent,

"ConvertStringFeatureQual"

, args);

537  bool

modified = (new_target !=

m_Target

);

560  if

(src_feat != dest_feat) {

571  if

(src_feat.empty() || src_field.empty() || dest_field.empty())

return kEmptyStr

;

581  string

src_var =

"src"

;

584  if

(src_feat == dest_feat) {

587  if

(!

source

.first.empty())

588  function

+=

source

.first;

589  if

(!dest.first.empty())

590  function

+= dest.first;

605  if

(!

source

.first.empty()) {

609  function

+=

source

.second;

620  if

(!

source

.first.empty())

621  function

+=

source

.first;

623  if

(dest_path.find(

','

) !=

NPOS

) {

624

vector<string> tokens;

628

dest_path = tokens[1];

632  function

+=

"("

+

source

.second +

", \""

+ dest_feat +

"\", \""

+ dest_path +

"\", "

;

642  if

(!

source

.first.empty()) {

646  function

+=

source

.second;

656  return

{ CMacroFunction_Resolve::GetFuncName(),

657

CMacroFunction_GeneQual::GetFuncName(),

660

CMacroFunction_UpdatemRNAProduct::GetFuncName(),

684  x_LoadPanel

(parent,

"ConvertStringSourceQual"

, args);

697  string

rt_var =

"src"

;

701  string

src_resolve_fnc, src_var_name = path;

704  if

(path.find(

','

) !=

NPOS

) {

705

vector<string> tokens;

711  if

(!src_resolve_fnc.empty()) {

723  if

(dest.find(

','

) !=

NPOS

) {

724

vector<string> tokens;

731  function

+= src_resolve_fnc;

742  if

(src_resolve_fnc.empty()) {

744  function

+=

"("

+ src_var_name +

");"

;

747  function

+= CMacroFunction_RemoveModifier::GetFuncName();

748  function

+=

"("

+ rt_var +

");"

;

771

features.erase(features.begin());

782  bool

modified = (new_target !=

m_Target

);

798

descr +=

" on protein sequence"

;

801

descr +=

" on nucleotide sequence"

;

808

descr +=

"remove overlapping mRNA"

;

813

descr +=

"remove overlapping gene"

;

818

descr +=

"remove overlapping transcript ID)"

;

822

descr +=

" original feature"

;

855  if

(feat_from.empty() || feat_to.empty())

882  function

+= CMacroFunction_RemoveFeature::GetFuncName() +

"();"

;

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual const vector< string > & GetKeywords() const

CConvertBsrcTreeItemData()

virtual string GetFunction(TConstraints &constraints) const

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

CConvertCdsGeneProtTreeItemData()

virtual bool UpdateTarget()

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetVariables()

virtual vector< string > GetMainFunctions() const

virtual string GetMacroDescription() const

virtual string GetVariables()

virtual vector< string > GetMainFunctions() const

CConvertFeatQualTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual bool UpdateTarget()

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

virtual string GetFunction(TConstraints &constraints) const

virtual bool UpdateTarget()

virtual string GetVariables()

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetMainFunctions() const

virtual string GetMacroDescription() const

CConvertFeatureTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

CConvertProteinQualTreeItemData()

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetMainFunctions() const

virtual string GetVariables()

CConvertQualTreeItemData(const string &description, EMacroFieldType type)

virtual string GetMacroDescription() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

static string s_GetConvertQualVariables(const CArgumentList &args)

virtual vector< string > GetFunctionNames() const

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetMainFunctions() const

CConvertRNAQualTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

virtual bool UpdateTarget()

virtual string GetMacroDescription() const

EMacroFieldType m_FieldType

for actions such as appply/edit/etc.

vector< string > GetFeatureTypes(bool for_removal=false, bool to_create=false, bool include_all=false) const

vector< string > GetRNATypes() const

string GetAsnPathToFieldName(const string &field, EMacroFieldType type, const string &target=kEmptyStr)

vector< string > GetncRNAClassTypes(bool include_any=true) const

static CMacroEditorContext & GetInstance()

vector< string > GetFeatQualifiers() const

const vector< string > & GetBsrcKeywords() const

vector< string > GetFieldNames(EMacroFieldType type) const

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

void x_LoadPanel(wxWindow *parent, const string &panel_name, const TArgumentsVector &arguments)

unique_ptr< CMacroPanelLoader > m_Panel

constructed panel for specifying function arguments

vector< pair< string, string > > TConstraints

static const string kConversionNotSupported

bool Empty(const CNcbiOstrstream &src)

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

vector< macro::SArgMetaData > TArgumentsVector

static const string s_StripName

pair< string, string > GetResolveFuncForDestCdsGeneProtQuals(const string &fieldname, const string &rt_var, TConstraints &constraints, bool remove_constraint)

void UpdateConstraintsForDualCdsGeneProt(TConstraints &constraints, const string &src_feat)

CTempString UpdateTargetForFeatures(const string &feature, const string &qualifier, bool for_removal=false)

void UpdateConstraintsForFeatures(TConstraints &constraints, const string &feature)

EMacroFieldType GetSourceTypeInDoublePanel(const CArgumentList &arg_list, EDirType dir)

pair< string, string > GetResolveFuncForRNAQuals(const string &fieldname, const string &rt_var, TConstraints &constraints, bool remove_constraint)

void OnConvertFeatFromCDS(CArgumentList &list, CArgument &arg)

string GetResolveFuncForQual(const string &container, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint=true)

Generates the definition of rt_var based on input "field".

string GetUpdatemRNADescription(const CArgument &arg)

pair< string, string > GetResolveFuncForMultiValuedQuals(EMacroFieldType type, const string &fieldname, const string &rt_var, TConstraints &constraints, bool remove_constraint)

void AddConstraintIgnoreNewText(const string &field, TConstraints &constraints, const CArgumentList &arg_list, const string &target=kEmptyStr)

CTempString UpdateTargetForDualFeatures(const string &feature, const string &from_field)

pair< string, string > GetResolveFuncForSrcCdsGeneProtQuals(const string &fieldname, const string &rt_var, TConstraints &constraints, bool remove_constraint)

CTempString UpdateTargetForRnas(const string &rna_type)

void WrapInQuotes(string &str)

string GetEditableFieldForPair(const string &field, const string &rt_var, bool is_feature)

void OnProteinNameDouble(CArgumentList &list, CArgument &arg)

pair< string, string > GetResolveFuncForDestFeatQuals(const string &feature, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint)

pair< string, string > GetResolveFuncForSrcFeatQuals(const string &feature, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint)

void OnExistingTextChanged(CArgumentList &list, CArgument &arg)

string GetHandleOldValue(const string &type)

void OnRnaTypeChanged(CArgumentList &list, CArgument &arg)

void UpdateConstraintsForRnas(TConstraints &constraints, const CArgumentList &arg_list)

string GetDelimiterChar(const string &del)

void UpdateFeatureType(string &feature, const string &field)

void OnConvertFeatToChanged(CArgumentList &list, CArgument &arg)

CTempString UpdateTargetForCdsGeneProt(const string &fieldname)

string GetSelectedCapType(const CArgumentList &arg_list)

void OnProductDouble(CArgumentList &list, CArgument &arg)

void AppendUpdatemRNAFnc(bool update_mrna, string &function)

void GetFeatureAndField(const string &field_name, string &feature, string &field)

string GetExistingTextDescr(const CArgumentList &arg_list)

string GetUpdatemRNAVar(const CArgumentList &arg_list)

const TArgumentsVector & GetConvertArgs()

const TArgumentsVector & GetOptionalArgs()

const string kCreateOnProtein

const string kExistingText

const TArgumentsVector & GetDualBsrcArgs()

const string kRemTranscriptid

const TArgumentsVector & GetConvertFeatArgs()

const CharType(& source)[N]

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4