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NCBI C++ ToolKit: src/gui/widgets/edit/macro_applytbl_itemdata.cpp Source File

GetEndOfConstraint(

& constraint,

& col,

&

,

case_sensitive =

)

(del ==

) del =

;

(!new_constraint.empty()) {

constraints.insert(constraints.begin(), make_pair(

, new_constraint));

(!new_constraint.empty());

ExtractNames(

& fieldname,

& feature,

& field)

(fieldname ==

) {

vector<string> tokens;

(tokens.size() == 2) {

(tokens.size() == 3) {

field = tokens[1] +

+ tokens[2];

match_feat, match_fieldname;

target_feat, target_fieldname;

ExtractNames(match_field.

, match_feat, match_fieldname);

(!values.empty()) {

ExtractNames(values.front().first, target_feat, target_fieldname);

(!match_feat.empty() && !target_feat.empty()) {

UpdateMatchFieldUsage(match_field, panel);

(del ==

) del =

;

(!new_constraint.empty()) {

constraints.insert(constraints.begin(), make_pair(

, new_constraint));

(!new_constraint.empty());

& target,

& target_rnatype,

& target_ncRNAclass)

(del ==

) del =

;

rna_type, ncRNA_class, rna_qual;

(!rna_type.empty() && (rna_type != target_rnatype) || (ncRNA_class != target_ncRNAclass)) {

(

);

!ncRNA_class.empty() ||

new_constraint;

new_constraint = CMacroFunction_InTable::GetFuncName() +

;

new_constraint = CMacroFunction_InTable::GetFuncName() +

;

(path.find(

) !=

) {

vector<string> tokens;

new_constraint +=

+ tokens[0] +

+ tokens[1] +

;

(path.find(

) !=

) {

new_constraint += path;

new_constraint +=

+ path +

;

(!new_constraint.empty()) {

GetEndOfConstraint(new_constraint, match_field.

, del, case_sensitive);

constraints.insert(constraints.begin(), make_pair(

, new_constraint));

(!new_constraint.empty());

GetEndofFunction(

use_for_macro_editor,

& rt_var,

del_enabled,

column_info,

=

)

(use_for_macro_editor) {

func_end += rt_var +

+ existing_text +

;

(existing_text ==

|| existing_text ==

) {

func_end +=

+ separator +

;

descr +=

;

descr +=

;

descr +=

+ match_field.

;

variables += GetExistingTextVariables(

);

new_constraint;

new_constraint = macro::CMacroFunction_InTable::GetFuncName() +

;

new_constraint = macro::CMacroFunction_InTable::GetFuncName() +

;

(path.find(

) !=

) {

vector<string> tokens;

new_constraint +=

+ tokens[0] +

+ tokens[1] +

;

(path.find(

) !=

) {

new_constraint += path;

new_constraint +=

+ path +

;

(!new_constraint.empty()) {

GetEndOfConstraint(new_constraint, match_field.

,

, case_sensitive);

new_constraint;

{ CMacroFunction_ValueFromTable::GetFuncName() };

args = fn_it.m_FArgs;

end_it = args.end();

matching_field =

;

(

(fn_it.m_FName, macro::CMacroFunction_InTable::GetFuncName())) {

(merge_del != end_it) {

(split_first != end_it) {

(convert_multi != end_it) {

(merge_first != end_it) {

(del_it != end_it) {

matching_field =

;

field_it = args.find(

);

(field_it == args.end() || value_it == args.end()) {

col = value_it->second;

(

<<

<< col);

col = col.substr(

(

).length(),

);

values.emplace_back(field_it->second, col_nr, fn_it.m_FieldTypeFrom, matching_field);

(table_it == args.end())

(filename.empty()) {

filename = table_it->second;

(

<<

<< filename <<

<< table_it->second);

(values.begin(), values.end(),

[](

& elem_A,

& elem_B)

{ return (get<1>(elem_A) < get<1>(elem_B)); });

& constraints,

del_enabled,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

&& it : values) {

(!

.

())

field_name = it.first;

obj_var =

;

found_constraint =

;

(found_constraint) {

+= resolve_func;

pos = field_name.find_last_of(

);

(found_constraint) {

+=

+ obj_var +

;

+=

+ field_name.substr(0, pos) +

;

+=

+ field_name.substr(pos + 1) +

;

(path.find(

) !=

) {

vector<string> tokens;

rt_obj =

;

+=

+ rt_obj +

+ tokens[0] +

+ tokens[1] +

;

+=

+ path +

;

col_descr = (column_info.empty()) ?

: *col_it;

+= GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr);

(!column_info.empty()) {

{ CMacroFunction_Resolve::GetFuncName(), CMacroFunction_ValueFromTable::GetFuncName(),

& constraints,

del_enabled,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

&& it : values) {

(!

.

())

field = it.first;

field_var =

;

+=

+ field_var +

;

+= CMacroFunction_SetStructCommField::GetFuncName();

+=

+ field_type +

;

col_descr = (column_info.empty()) ?

: *col_it;

+= GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr);

(!column_info.empty()) {

{ CMacroFunction_ValueFromTable::GetFuncName(),

CMacroFunction_Resolve::GetFuncName(),

CMacroFunction_SetStructCommField::GetFuncName() };

args = fn_it.m_FArgs;

end_it = args.end();

matching_field =

;

(

(fn_it.m_FName, macro::CMacroFunction_InTable::GetFuncName())) {

(merge_del != end_it) {

(split_first != end_it) {

(convert_multi != end_it) {

(merge_first != end_it) {

(del_it != end_it) {

matching_field =

;

field_it = args.find(

);

(field_it == args.end() || value_it == args.end()) {

col = value_it->second;

(

<<

<< col);

col = col.substr(

(

).length(),

);

= fn_it.m_FieldTypeFrom;

(strcommfield_it != args.end()) {

values.emplace_back(

, col_nr,

, matching_field);

values.emplace_back(field_it->second, col_nr,

, matching_field);

(table_it == args.end())

(filename.empty()) {

filename = table_it->second;

(

<<

<< filename <<

<< table_it->second);

(values.begin(), values.end(),

[](

& elem_A,

& elem_B)

{ return (get<1>(elem_A) < get<1>(elem_B)); });

& constraints,

del_enabled,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

&& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

func_end = GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr);

(column_info.empty()) {

field = it.first;

+= CMacroFunction_SetPubPMID::GetFuncName() +

+ rt_var +

+ remove_blank +

;

auth_var =

;

mi_var =

;

+= CMacroFunction_SetPubAuthorMI::GetFuncName() +

+ mi_var +

+ func_end;

+= CMacroFunction_SetSerialNumber::GetFuncName() +

+ func_end;

+= CMacroFunction_SetPubCitation::GetFuncName() +

+ func_end;

(!column_info.empty()) {

vector<string> funcs{ CMacroFunction_ValueFromTable::GetFuncName(),

CMacroFunction_SetPubPMID::GetFuncName(),

CMacroFunction_SetPubAuthorMI::GetFuncName(),

CMacroFunction_SetSerialNumber::GetFuncName(),

CMacroFunction_SetPubCitation::GetFuncName(),

funcs.reserve(funcs.size() + pub_fncs.size());

funcs.insert(funcs.end(), pub_fncs.begin(), pub_fncs.end());

& constraints,

del_enabled,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

+= GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr);

(!column_info.empty()) {

& constraints,

del_enabled,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

+= GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr);

(!column_info.empty()) {

& constraints,

del_enabled,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

+= GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr);

(!column_info.empty()) {

(parent,

, args);

(!values.empty()) {

vector<string> tokens;

(tokens.size() == 2) {

& constraints,

del_enabled,

& target,

update_mrna,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

func_end = GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr,

);

vector<string> field_parts;

(field_parts.size() != 2)

feat_type = field_parts[0];

feat_qual = field_parts[1];

gene_field = feat_qual;

gene_field =

+ gene_field;

+=

+ gene_field +

+ func_end +

;

(desired_target == target) {

rt_obj =

;

(constr_func.empty()) {

+=

+ path +

+ func_end +

;

+= constr_func;

+=

+ rt_obj +

+ func_end +

;

(path.find(

) !=

) {

vector<string> tokens;

rt_obj =

;

+= macro::CMacroFunction_AddorSetGbQual::GetFuncName();

+=

+ rt_obj +

+ tokens[0] +

+ feat_qual +

+ func_end +

;

+=

+ rt_obj +

+ tokens[0] +

+ tokens[1] +

+ func_end +

;

+=

+ path +

+ func_end +

;

(desired_target == macro::CMacroBioData::sm_Protein) {

rt_obj =

;

(constr_func.empty()) {

+=

+ updated_path +

+ func_end +

+

+

;

+= constr_func;

+= rt_obj +

+ func_end +

+

+

;

(updated_path.find(

) !=

) {

vector<string> tokens;

+=

+ feat_type +

+ tokens[1] +

+ func_end +

+

+

;

+=

+ updated_path +

+ func_end +

+

+

;

(!column_info.empty()) {

CMacroFunction_UpdatemRNAProduct::GetFuncName(),

CMacroFunction_Resolve::GetFuncName(),

CMacroFunction_ValueFromTable::GetFuncName() };

(parent,

, args);

(!values.empty()) {

feat_type, feat_qual;

& target,

update_mrna,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

func_end = GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr,

);

field_name = it.first;

feat_type, feat_qual;

(desired_target == target) {

rt_obj =

;

(constr_func.empty()) {

+=

+ path +

+ func_end +

;

+= constr_func;

+=

+ rt_obj +

+ func_end +

;

(path.find(

) !=

) {

vector<string> tokens;

rt_obj =

;

+=

+ rt_obj +

+ tokens[0] +

+ tokens[1] +

+ func_end +

;

+=

+ path +

+ func_end +

;

(desired_target == macro::CMacroBioData::sm_Protein) {

updated_path = path;

rt_obj =

;

(constr_func.empty()) {

+=

+ updated_path +

+ func_end +

+

+

;

+= constr_func;

+= rt_obj +

+ func_end +

+

+

;

(updated_path.find(

) !=

) {

vector<string> tokens;

+=

+ feat_type +

+ tokens[1] +

+ func_end +

+

+

;

+=

+ updated_path +

+ func_end +

+

+

;

CMacroFunction_UpdatemRNAProduct::GetFuncName(),

CMacroFunction_Resolve::GetFuncName(),

CMacroFunction_ValueFromTable::GetFuncName() };

(!values.empty()) {

rna_type, ncRNA_class, rna_qual;

& target_rna_type,

vector<string>& column_info)

col_it = column_info.begin();

(!column_info.empty() && values.size() != column_info.size()) {

(

<<

);

rt_var =

;

(

& it : values) {

(!

.

())

col_descr = (column_info.empty()) ?

: *col_it;

func_end = GetEndofFunction(column_info.empty(), rt_var, del_enabled, col_descr,

);

field_name = it.first;

rna_type, ncRNA_class, rna_qual;

(column_info.empty()) {

(rna_type == target_rna_type) {

+=

+ gene_field +

+ func_end +

;

(path.find(

) !=

) {

vector<string> tokens;

rt_obj =

;

+=

+ rt_obj +

+ tokens[0] +

+ tokens[1] +

+ func_end +

;

(path.find(

) !=

) {

+= CMacroFunction_SetRnaProduct::GetFuncName();

+=

+ func_end +

;

+=

+ path +

+ func_end +

;

{ CMacroFunction_Resolve::GetFuncName(),

CMacroFunction_ValueFromTable::GetFuncName(),

CMacroFunction_SetRnaProduct::GetFuncName(),

(

& fn_it :

) {

args = fn_it.m_FArgs;

end_it = args.end();

matching_field =

;

(

(fn_it.m_FName, macro::CMacroFunction_InTable::GetFuncName())) {

merge_del = args.find(

);

(merge_del != end_it) {

(split_first != end_it) {

(convert_multi != end_it) {

(merge_first != end_it) {

(del_it != end_it) {

matching_field =

;

field_it = args.find(

);

(field_it == args.end() || value_it == args.end()) {

col = value_it->second;

(

<<

<< col);

col = col.substr(

(

).length(),

);

rna_type = args.find(

);

(rna_type != args.end() && qual != args.end()) {

(ncRNA_class_it != args.end()) ? ncRNA_class_it->second :

, qual->second);

values.emplace_back(rna_field, col_nr, fn_it.m_FieldTypeFrom, matching_field);

values.emplace_back(field_it->second, col_nr, fn_it.m_FieldTypeFrom, matching_field);

(table_it == args.end())

(filename.empty()) {

filename = table_it->second;

(

<<

<< filename <<

<< table_it->second);

(values.begin(), values.end(),

[](

& elem_A,

& elem_B)

{ return (get<1>(elem_A) < get<1>(elem_B)); });

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const string &target, bool update_mrna, const vector< string > &column_info={})

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

virtual string GetVariables()

CApplyCDSGeneProtTableTreeItemData()

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const vector< string > &column_info={})

virtual vector< string > GetFunctionNames() const

CApplyDBlinkTableTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual string GetVariables()

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const string &target, bool update_mrna, const vector< string > &column_info={})

CApplyFeatTableTreeItemData()

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const vector< string > &column_info={})

CApplyMiscTableTreeItemData()

virtual vector< string > GetFunctionNames() const

virtual void x_AddParamPanel(wxWindow *parent)

virtual string GetFunction(TConstraints &constraints) const

CApplyMolinfoTableTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const vector< string > &column_info={})

virtual vector< string > GetFunctionNames() const

virtual vector< string > GetFunctionNames() const

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const vector< string > &column_info={})

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

CApplyPubTableTreeItemData()

virtual bool SetData(const vector< CFuncWithArgs > &func_info)

virtual string GetFunction(TConstraints &constraints) const

virtual void x_AddParamPanel(wxWindow *parent)

CApplyRNATableTreeItemData()

virtual vector< string > GetFunctionNames() const

string m_TargetncRNAclass

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const string &target_rna_type, const vector< string > &column_info={})

virtual string GetFunction(TConstraints &constraints) const

virtual vector< string > GetFunctionNames() const

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const vector< string > &column_info={})

CApplySrcTableTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

virtual vector< string > GetFunctionNames() const

CApplyStrCommTableTreeItemData()

virtual void x_AddParamPanel(wxWindow *parent)

static string s_GetFunction(const TStringPairsVector &values, TConstraints &constraints, bool del_enabled, const vector< string > &column_info={})

virtual string GetFunction(TConstraints &constraints) const

virtual bool SetData(const vector< CFuncWithArgs > &func_info)

void x_LoadParamPanel(wxWindow *parent, ECustomPanelType type)

CMacroApplySrcTablePanel * m_TablePanel

virtual bool SetData(const vector< CFuncWithArgs > &func_info)

string GetMacroDescription() const final

vector< string > GetMainFunctions() const override

static string s_GetMatchFieldConstraint(const SFieldFromTable &match_field, const string &delimiter, EMacroFieldType field_type, const string &target=kEmptyStr)

string GetVariables() override

vector< string > x_GetPubFunctions() const

SFieldFromTable GetMatchField() const

bool IsSplitFirstSet() const

string GetDelimiter() const

TStringPairsVector GetValues() const

vector< tuple< string, int, EMacroFieldType, bool > > TAddValue

bool IsMergeDelimiterSet() const

bool IsMergeFirstSet() const

void SetDelimiter(const string &del)

void SetMergeDelimiter(bool value)

void SetMergeFirst(bool value)

string GetFilename() const

void SetSplitFirst(bool value)

void SetFilename(const string &fname)

void SetValues(const TAddValue &values)

bool IsConvertMultiSet() const

void SetConvertMulti(bool value)

string GetAsnPathToFieldName(const string &field, EMacroFieldType type, const string &target=kEmptyStr)

static CMacroEditorContext & GetInstance()

string GetAsnPathToAuthorFieldName(const string &author_name)

@ ePubFieldType_AuthorLastName

@ ePubFieldType_AuthorFirstName

@ ePubFieldType_SerialNumber

@ ePubFieldType_DateMonth

@ ePubFieldType_AuthorConsortium

@ ePubFieldType_AuthorMiddleInitial

@ ePubFieldType_AuthorSuffix

static EPubFieldType GetTypeForLabel(string label)

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

void x_LoadPanel(wxWindow *parent, const string &panel_name, const TArgumentsVector &arguments)

unique_ptr< CMacroPanelLoader > m_Panel

constructed panel for specifying function arguments

virtual bool UpdateTarget()

vector< pair< string, string > > TConstraints

const char * kStructCommFieldName

const char * kFieldTypeSeqId

const char * kStructCommDBName

const char * kStructCommFieldValuePair

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Info(CExceptionArgs_Base &args)

static CTempString GetFuncName()

bool StringsAreEquivalent(const string &name1, const string &name2)

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static const char * sm_FuncVolume

class CMacroFunction_SetPubVolIssuePages SetPubVolume(newValue, existing_text, delimiter,...

static CTempString GetFuncName()

bool IsStructVoucherPart(const string &field)

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static CTempString GetFuncName()

static const char * sm_FuncPages

static CTempString GetFuncName()

bool IsSatelliteSubfield(const string &field)

bool IsMobileElementTSubfield(const string &field)

static CTempString GetFuncName()

static CTempString GetFuncName()

static const char * sm_FuncIssue

void NcbiWarningBox(const string &message, const string &title="Warning")

specialized Message Box function for reporting non-critical errors

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StringToBool(const CTempString str)

Convert string to bool.

vector< pair< string, string > > TStringPairsVector

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static const string BoolToString(bool value)

Convert bool to string.

static bool EqualCase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-sensitive equality of a substring with another string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

@ fConvErr_NoThrow

Do not throw an exception on error.

@ eNocase

Case insensitive compare.

vector< macro::SArgMetaData > TArgumentsVector

void UpdateConstraintsForDualCdsGeneProt(TConstraints &constraints, const string &src_feat)

CTempString UpdateTargetForFeatures(const string &feature, const string &qualifier, bool for_removal=false)

bool MultipleValuesAllowed(const string &field)

void UpdateConstraintsForFeatures(TConstraints &constraints, const string &feature)

string GetResolveFuncForSVPart(const string &field, const string &rt_var, TConstraints &constraints, bool &found_constraint)

string GetResolveFuncForMultiValuedQual(const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint)

string GetResolveFuncForQual(const string &container, const string &field, const string &rt_var, TConstraints &constraints, bool remove_constraint=true)

Generates the definition of rt_var based on input "field".

void CheckTableNameAndColumns(const string &filename, const TStringPairsVector &values, TConstraints &constraints, string &warning)

void GetRNASpecificFieldsForTableReader(const string &field_name, string &rna_type, string &ncRNA_type, string &rna_qual)

bool IsGeneField(const string &field_name)

void GetRNASpecificFields(const string &field_name, string &rna_type, string &ncRNA_type, string &rna_qual)

CTempString UpdateTargetForRnas(const string &rna_type)

string GetResolveFuncForApplyAuthors(CPubFieldType::EPubFieldType type, const string &rt_var, TConstraints &constraints)

void WrapInQuotes(string &str)

string GetResolveFuncForStrCommQual(const string &field, const string &field_name, const string &rt_var, TConstraints &constraints)

void OnExistingTextChanged(CArgumentList &list, CArgument &arg)

string GetHandleOldValue(const string &type)

string GetFuncFromTable(const string &rt_var, const string &col)

void UpdateConstraintsForRnas(TConstraints &constraints, const CArgumentList &arg_list)

string GetDelimiterChar(const string &del)

void UpdateFeatureType(string &feature, const string &field)

CTempString UpdateTargetForCdsGeneProt(const string &fieldname)

string GetRNAFieldname(const string &rna_type, const string &ncRNA_type, const string &rna_qual)

string GetResolveFuncForPubQual(const string &field, string &rt_var, TConstraints &constraints)

void AppendUpdatemRNAFnc(bool update_mrna, string &function)

void GetFeatureAndField(const string &field_name, string &feature, string &field)

string GetHandleBlank(const string &str)

string GetPropertyFromInfo(const string &info, const string &property)

const string kConvertMulti

const string kMultipleSpsOnly

const TArgumentsVector & GetOptionalArgs()

const TArgumentsVector & GetApplyTableArgs()

const string kExistingText

const string kStrCommField

constexpr auto sort(_Init &&init)

constexpr bool empty(list< Ts... >) noexcept

static const char delimiter[]

string ToStdString(const wxString &s)

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