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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/local__dataloader__test_8cpp.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/blastdb/unit_test/local_dataloader_test.cpp File Reference

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◆ NCBI_BOOST_NO_AUTO_TEST_MAIN ◆ BOOST_AUTO_TEST_CASE() [1/7] BOOST_AUTO_TEST_CASE ( BlastDbAdapterGetSequenceWithRange  ) ◆ BOOST_AUTO_TEST_CASE() [2/7] BOOST_AUTO_TEST_CASE ( FetchNonRedundantEntry  )

Definition at line 257 of file local_dataloader_test.cpp.

References CScope::AddDataLoader(), dbname(), CSeq_inst_Base::eMol_aa, CObjectManager::eNonDefault, CBlastDbDataLoader::eProtein, CScope::GetBioseqHandle(), CBioseq_Handle::GetCompleteBioseq(), CBioseq_Base::GetInst(), CBioseq_Handle::GetInst(), CObjectManager::GetInstance(), CSeq_inst_Base::GetLength(), SRegisterLoaderInfo< TLoader >::GetLoader(), CScope::GetSequenceType(), CBioseq::GetTaxId(), CScope::GetTaxId(), CObjectManager::kPriority_NotSet, CConstRef< C, Locker >::NotNull(), CBlastDbDataLoader::RegisterInObjectManager(), and TAX_ID_CONST.

◆ BOOST_AUTO_TEST_CASE() [3/7] BOOST_AUTO_TEST_CASE ( LocalBlastDbAdapterMT  ) ◆ BOOST_AUTO_TEST_CASE() [4/7] BOOST_AUTO_TEST_CASE ( LocalFetchBatchData  )

Definition at line 106 of file local_dataloader_test.cpp.

References CScope::AddDataLoader(), dbname(), CSeq_inst_Base::eMol_na, CObjectManager::eNonDefault, CBlastDbDataLoader::eNucleotide, CSeq_id_Handle::GetHandle(), CObjectManager::GetInstance(), SRegisterLoaderInfo< TLoader >::GetLoader(), CScope::GetSequenceLengths(), CScope::GetSequenceTypes(), CScope::GetTaxIds(), GI_CONST, CObjectManager::kPriority_NotSet, CBlastDbDataLoader::RegisterInObjectManager(), and TAX_ID_CONST.

◆ BOOST_AUTO_TEST_CASE() [5/7] BOOST_AUTO_TEST_CASE ( LocalFetchNucleotideBioseq  )

Definition at line 76 of file local_dataloader_test.cpp.

References CScope::AddDataLoader(), dbname(), CSeq_id_Base::e_Gi, CSeq_inst_Base::eMol_na, CObjectManager::eNonDefault, CBlastDbDataLoader::eNucleotide, CScope::GetBioseqHandle(), CBioseq_Handle::GetCompleteBioseq(), CBioseq_Base::GetInst(), CBioseq_Handle::GetInst(), CObjectManager::GetInstance(), CSeq_inst_Base::GetLength(), SRegisterLoaderInfo< TLoader >::GetLoader(), CScope::GetSequenceType(), CScope::GetTaxId(), CObjectManager::kPriority_NotSet, CBlastDbDataLoader::RegisterInObjectManager(), CBioseq_Handle::State_NoData(), and TAX_ID_CONST.

◆ BOOST_AUTO_TEST_CASE() [6/7] BOOST_AUTO_TEST_CASE ( LocalFetchNucleotideBioseqNotFixedSize  )

Definition at line 183 of file local_dataloader_test.cpp.

References CScope::AddDataLoader(), dbname(), CSeq_id_Base::e_Other, CSeq_inst_Base::eMol_na, CObjectManager::eNonDefault, CBlastDbDataLoader::eNucleotide, CScope::GetBioseqHandle(), CBioseq_Handle::GetCompleteBioseq(), CBioseq_Base::GetInst(), CBioseq_Handle::GetInst(), CObjectManager::GetInstance(), CSeq_inst_Base::GetLength(), SRegisterLoaderInfo< TLoader >::GetLoader(), CScope::GetSequenceType(), CScope::GetTaxId(), CObjectManager::kPriority_NotSet, CBlastDbDataLoader::RegisterInObjectManager(), and TAX_ID_CONST.

◆ BOOST_AUTO_TEST_CASE() [7/7] BOOST_AUTO_TEST_CASE ( LocalFetchProteinBioseq  )

Definition at line 208 of file local_dataloader_test.cpp.

References CScope::AddDataLoader(), data, dbname(), CSeq_id_Base::e_Genbank, CSeq_id_Base::e_Gi, CSeq_inst_Base::eMol_aa, CObjectManager::eNonDefault, CBlastDbDataLoader::eProtein, CSeq_descr_Base::Get(), CScope::GetBioseqHandle(), CBioseq_Handle::GetCompleteBioseq(), CBioseq_Base::GetDescr(), CBioseq_Base::GetInst(), CBioseq_Handle::GetInst(), CObjectManager::GetInstance(), CSeq_inst_Base::GetLength(), SRegisterLoaderInfo< TLoader >::GetLoader(), CBioseq_Handle::GetSeqId(), CSeq_id::GetSeqIdString(), CScope::GetSequenceType(), CScope::GetTaxId(), INVALID_TAX_ID, CBioseq_Base::IsSetDescr(), ITERATE, CObjectManager::kPriority_NotSet, CBlastDbDataLoader::RegisterInObjectManager(), CBioseq_Handle::State_NoData(), and TAX_ID_CONST.

◆ USING_NCBI_SCOPE

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