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NCBI C++ ToolKit: include/algo/cobalt/links.hpp Source File

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: m_NumElements(num_elements),

AddLink(

,

second,

);

IsLink(

,

second)

;

IsLink(

vector<int>&

,

vector<int>& second,

& dist)

;

x_InitLinkPtrs(

);

x_IsLinkPtr(

,

second)

;

Exceptions for CLinks class.

@ eInvalidNode

Invalid node index.

NCBI_EXCEPTION_DEFAULT(CLinksException, CException)

Set of edges with weights between nodes represented by zero-based positive integers.

double m_MaxWeight

Maximym weight in the list.

CLinks & operator=(const CLinks &links)

Forbid assignment operator.

vector< SLink * > m_LinkPtrs

Pointers to links in m_Links sorted according to node indexes; used for checks whether a link exists.

list< SLink > m_Links

Links.

CLinks(Uint4 num_elements)

Constructor.

Uint4 GetNumElements(void) const

Get number of nodes.

Uint4 m_NumElements

Number of nodes.

bool m_IsSorted

Is list of links sorted.

list< SLink >::const_iterator SLink_CI

SLink_CI begin(void) const

Get iterator pointing to the first link.

SLink_CI end(void) const

Get iterator pointing behind the last link.

bool IsSorted(void) const

Check whether the links are sorted according to weights.

CLinks(const CLinks &links)

Forbid copy constructor.

Uint4 GetNumLinks(void) const

Get number of links.

Uint4 m_NumLinks

Number of links.

double GetMaxWeight(void) const

Get maximum weight over all links.

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_COBALT_EXPORT

Compressed bitset (entry point to bm.h)

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

double weight

Edge weight.

SLink(int f, int s, double w)

Constructor.

bool operator<(const SLink &link) const

Less then operator for sorting links by weights.

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