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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/links_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/cobalt/links.cpp Source File

50 if

(link1->first == link2->first) {

51 return

link1->second < link2->second;

54 return

link1->first < link2->first;

63 if

(

first

> second) {

68 " larger than number of elements attempted"

);

85 "before checks for links can be made"

);

89 " larger than number of elements attempted"

);

92 if

(

first

> second) {

104 "before checks for links can be made"

);

108 ITERATE

(vector<int>, it1, elems1) {

109 ITERATE

(vector<int>, it2, elems2) {

120

dist = sum / ((double)(elems1.size() * elems2.size()));

162 if

(

first

> second) {

167

vector<SLink*>::const_iterator it = lower_bound(

m_LinkPtrs

.begin(),

173

&& (*it)->second == second) {

Exceptions for CLinks class.

Set of edges with weights between nodes represented by zero-based positive integers.

void x_InitLinkPtrs(void)

Initialize secondary list of link pointers.

void AddLink(int first, int second, double weight)

Add link.

bool IsLink(int first, int second) const

Check if link exists between given two nodes.

double m_MaxWeight

Maximym weight in the list.

void Sort(void)

Sort links according to weights in ascending order.

vector< SLink * > m_LinkPtrs

Pointers to links in m_Links sorted according to node indexes; used for checks whether a link exists.

list< SLink > m_Links

Links.

Uint4 m_NumElements

Number of nodes.

bool m_IsSorted

Is list of links sorted.

Uint4 m_NumLinks

Number of links.

const CLinks::SLink * x_GetLink(int first, int second) const

Get link by node ids.

bool x_IsLinkPtr(int first, int second) const

Check if link exists by searching list of link pointers sorted by node indexes.

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool compare_links_by_nodes(const CLinks::SLink *link1, const CLinks::SLink *link2)

constexpr auto sort(_Init &&init)

double weight

Edge weight.

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