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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/link__utils_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/objutils/link_utils.hpp Source File

1 #ifndef LINK_UTILS__HPP 2 #define LINK_UTILS__HPP 60  static void

AddSequenceLinks(

const

objects::CSeq_id_Handle& idh,

61  const string

& tax_id_file,

62

objects::CScope& scope,

66  bool

relative =

true

);

69  const

objects::CBioseq_Handle& handle,

70  const string

& tax_id_file,

72  bool

relative =

true

,

73  bool

exclude_self_links =

false

);

76  const

objects::CSeq_loc& loc,

77  const string

& tax_id_file,

78

objects::CScope& scope,

80  bool

relative =

true

,

81  bool

exclude_self_links =

false

);

83  static void

AddBlastProductLink(

const

objects::CSeq_feat& feat,

84

objects::CScope& scope,

89  const

objects::CBioseq_Handle& handle,

91  bool

add_parent_gene_dbxrefs =

true

,

92  bool

relative =

true

);

95  const

objects::CSeq_loc& loc,

96

objects::CScope& scope,

98  bool

add_parent_gene_dbxrefs =

true

,

99  bool

relative =

true

);

101  static void

AddDbxrefLinksForSNP(

const

objects::CSeq_feat& feat,

103

objects::CScope& scope,

105  bool

relative =

true

);

108  const string

&

type

,

const string

& name,

109  const string

&

label

,

const string

& url,

110  bool

relative =

true

)

112

x_AddLink(links,

type

, name,

label

, url, relative);

117  static void

x_AddLink(TLinksMap& links,

118  const string

&

type

,

const string

& name,

119  const string

&

label

,

const string

& url,

120  bool

relative =

true

);

122  static void

x_AddDbxrefFeatureLinks(

const

objects::CSeq_feat& feat,

123  const

objects::CSeq_loc& loc,

124

objects::CScope& scope,

125

objects::CBioseq_Handle& bsh,

128  bool

add_parent_gene_dbxrefs =

true

,

129  bool

relative =

true

);

static void AddDbxrefFeatureLinks(const objects::CSeq_feat &feat, const objects::CBioseq_Handle &handle, TLinksMap &links, bool add_parent_gene_dbxrefs=true, bool relative=true)

map< string, vector< pair< string, string > > > TLinks

static void AddLink(TLinksMap &links, const string &type, const string &name, const string &label, const string &url, bool relative=true)

map< string, TLinks > TLinksMap

static void AddFeatureLinks(const objects::CSeq_feat &feat, const objects::CBioseq_Handle &handle, const string &tax_id_file, TLinksMap &links, bool relative=true, bool exclude_self_links=false)

static void AddDbxrefFeatureLinks(const objects::CSeq_feat &feat, const objects::CSeq_loc &loc, objects::CScope &scope, TLinksMap &links, bool add_parent_gene_dbxrefs=true, bool relative=true)

static void AddFeatureLinks(const objects::CSeq_feat &feat, const objects::CSeq_loc &loc, const string &tax_id_file, objects::CScope &scope, TLinksMap &links, bool relative=true, bool exclude_self_links=false)

namespace ncbi::objects::

unsigned int TSeqPos

Type for sequence locations and lengths.

SStrictId_Tax::TId TTaxId

Taxon id type.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static const char label[]

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