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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/lds2__dataloader_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/data_loaders/lds2/lds2_dataloader.hpp Source File

1 #ifndef LDS2_DATALOADER_HPP__ 2 #define LDS2_DATALOADER_HPP__ 53 #define kCFParam_LDS2_DbPath "DbPath" 54 #define kCFParam_LDS2_FastaFlags "FastaFlags" 55 #define kCFParam_LDS2_LockMode "LockMode" 82  static string

GetLoaderNameFromArgs(

void

);

87  const string

& db_path,

91

ELockMode lock_mode = eDefaultLockMode);

92  static string

GetLoaderNameFromArgs(

const string

& db_path);

101

ELockMode lock_mode = eDefaultLockMode);

165  void

x_LoadBlobs(

const TBlobSet

& blobs,

CFastaReader::TFlags m_FastaFlags

CLDS2_DataLoader::ELockMode m_LockMode

CRef< CLDS2_Database > m_Db

CLDS2_Database::TBlobSet TBlobSet

CRef< CLDS2_Database > m_Db

void operator==(const CLDS2_DataLoader &)

map< string, CRef< CLDS2_UrlHandler_Base > > THandlers

CLDS2_DataLoader(const CLDS2_DataLoader &)

CSimpleLoaderMaker< CLDS2_DataLoader > TSimpleMaker

CParamLoaderMaker< CLDS2_DataLoader, CLDS2_Database & > TDbMaker

ELockMode

Database lock control.

@ eDoNotLockDatabase

Do not lock the database.

@ eLockDatabase

Lock the database.

SRegisterLoaderInfo< CLDS2_DataLoader > TRegisterLoaderInfo

CFastaReader::TFlags m_FastaFlags

vector< SLDS2_Blob > TBlobSet

A set of ids (file_id, blob_id etc.).

Base class for URL handler.

void(*)(CSeq_entry_Handle seh, IWorkbench *wb, const CSerialObject &obj) handler

Operators to edit gaps in sequences.

long TFlags

binary OR of EFlags

virtual CObjectManager::TPriority GetDefaultPriority(void) const

vector< CSeq_id_Handle > TIds

virtual TTSE_Lock ResolveConflict(const CSeq_id_Handle &id, const TTSE_LockSet &tse_set)

Resolve TSE conflict *select the best TSE from the set of dead TSEs.

virtual bool CanGetBlobById(void) const

virtual TTSE_Lock GetBlobById(const TBlobId &blob_id)

virtual void GetIds(const CSeq_id_Handle &idh, TIds &ids)

Request for a list of all Seq-ids of a sequence.

EChoice

main blob is blob with sequence all other blobs are external and contain external annotations

virtual TTSE_LockSet GetRecords(const CSeq_id_Handle &idh, EChoice choice)

Request from a datasource using handles and ranges instead of seq-loc The TSEs loaded in this call wi...

EIsDefault

Flag defining if the data loader is included in the "default" group.

virtual TTSE_LockSet GetExternalAnnotRecords(const CSeq_id_Handle &idh, const SAnnotSelector *sel)

static void RegisterInObjectManager(CObjectManager &om, CLoaderMaker_Base &loader_maker, CObjectManager::EIsDefault is_default, CObjectManager::TPriority priority)

Register the loader only if the name is not yet registered in the object manager.

virtual TTSE_LockSet GetExternalRecords(const CBioseq_Info &bioseq)

Request from a datasource set of blobs with external annotations.

virtual void GetChunk(TChunk chunk_info)

virtual TBlobId GetBlobId(const CSeq_id_Handle &idh)

@ kPriority_NotSet

Deprecated: use kPriority_Default instead.

list< SDriverInfo > TDriverInfoList

List of driver information.

EEntryPointRequest

Actions performed by the entry point.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

#define NCBI_XLOADER_LDS2_EXPORT

const string kDataLoader_LDS2_DriverName

void NCBI_EntryPoint_xloader_lds2(CPluginManager< objects::CDataLoader >::TDriverInfoList &info_list, CPluginManager< objects::CDataLoader >::EEntryPointRequest method)

void NCBI_EntryPoint_DataLoader_LDS2(CPluginManager< objects::CDataLoader >::TDriverInfoList &info_list, CPluginManager< objects::CDataLoader >::EEntryPointRequest method)

std::istream & in(std::istream &in_, double &x_)

CRef< objects::CObjectManager > om


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