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NCBI C++ ToolKit: src/objtools/lds2/lds2.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbifile.hpp>
#include <corelib/stream_utils.hpp>
#include <util/checksum.hpp>
#include <util/format_guess.hpp>
#include <db/sqlite/sqlitewrapp.hpp>
#include <serial/objhook.hpp>
#include <serial/objistr.hpp>
#include <objects/seqset/seqset__.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/seqalign_exception.hpp>
#include <objects/seqres/Seq_graph.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objtools/error_codes.hpp>
#include <objtools/readers/reader_exception.hpp>
#include <objtools/lds2/lds2.hpp>
#include <objtools/lds2/lds2_expt.hpp>
#include <set>
#include <map>
#include <stack>

Include dependency graph for lds2.cpp:

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Classes class   CLDS2_ObjectParser   struct   CLDS2_ObjectParser::SBioseqInfo   class   CLDS2_Seq_id_Hook   class   CLDS2_Seq_id_Hook::CGuard   class   CLDS2_AnnotType_Hook   class   CLDS2_AnnotDesc_Hook   class   CLDS2_Annot_Hook   class   CLDS2_SeqEntry_Hook   class   CLDS2_BioseqSet_Hook   class   CLDS2_BioseqIds_Hook   Macros #define  NCBI_USE_ERRCODE_X   Objtools_LDS2   Typedefs typedef CLDS2_Database::TSeqIdSet  TSeqIdSet   typedef SLDS2_AnnotIdInfo::TRange  TAnnotRange   Functions static bool  IsSupportedFormat (CFormatGuess::EFormat format)   Variables static const SLDS2_Blob::EBlobType  kExpectedBlobTypes []   Macro Definition Documentation ◆ NCBI_USE_ERRCODE_X #define NCBI_USE_ERRCODE_X   Objtools_LDS2

Definition at line 59 of file lds2.cpp.

Typedef Documentation ◆ TAnnotRange typedef SLDS2_AnnotIdInfo::TRange TAnnotRange

Definition at line 68 of file lds2.cpp.

◆ TSeqIdSet typedef CLDS2_Database::TSeqIdSet TSeqIdSet

Definition at line 67 of file lds2.cpp.

Function Documentation ◆ IsSupportedFormat() static bool IsSupportedFormat ( CFormatGuess::EFormat  format ) static

Definition at line 1001 of file lds2.cpp.

References CFormatGuess::eBinaryASN, CFormatGuess::eFasta, CFormatGuess::eTextASN, CFormatGuess::eXml, and format.

Referenced by CLDS2_Manager::UpdateData().

Variable Documentation ◆ kExpectedBlobTypes const SLDS2_Blob::EBlobType kExpectedBlobTypes[] static Initial value:

= {

SLDS2_Blob::eSeq_entry

,

SLDS2_Blob::eBioseq

,

SLDS2_Blob::eBioseq_set

,

SLDS2_Blob::eSeq_annot

,

SLDS2_Blob::eSeq_align_set

,

SLDS2_Blob::eSeq_align

,

SLDS2_Blob::eSeq_submit

}

SLDS2_Blob::eSeq_annot

@ eSeq_annot

Definition: lds2_db.hpp:176 SLDS2_Blob::eSeq_submit

@ eSeq_submit

Definition: lds2_db.hpp:179 SLDS2_Blob::eBioseq

@ eBioseq

Definition: lds2_db.hpp:171 SLDS2_Blob::eSeq_align

@ eSeq_align

Definition: lds2_db.hpp:178 SLDS2_Blob::eBioseq_set

@ eBioseq_set

Definition: lds2_db.hpp:172 SLDS2_Blob::eSeq_entry

@ eSeq_entry

Definition: lds2_db.hpp:170 SLDS2_Blob::eSeq_align_set

@ eSeq_align_set

Definition: lds2_db.hpp:177

Definition at line 616 of file lds2.cpp.

Referenced by CLDS2_ObjectParser::x_GetBlobType().

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