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NCBI C++ ToolKit: src/gui/packages/pkg_snp/ld/ld_track.cpp Source File

);

, m_IconFilter(eIcon_Settings,

,

,

)

kNPP_Cutoff= 50;

bIsLayoutOnlyChange =

;

lenExp = (lenExp<1) ? 0 : (

)

((

)lenExp);

(dlg.ShowModal() == wxID_OK) {

bIsLayoutOnlyChange =

;

(bIsLayoutOnlyChange);

(

);

( !src_annots.

() ) {

seq_ds->

(iter->first);

( !iter->second.empty() ) {

track->SetTitle(iter->second);

CAppJobNotification Notification send by CAppJobEventTranslator.

CDataTrack - a abstract base class for layout tracks which need to deal with background data retrieva...

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

void Add(CSeqGlyph *obj)

Append a layout object to the end.

CRef< CInlineLayout > m_Inline

CRef< CSimpleLayout > m_Simple

void SetLayoutPolicy(ILayoutPolicy *policy)

Set policy on how to deploy the layout of its children.

void SetConfig(const CSeqGraphicConfig &config)

void SetName(const string &)

void LoadData(const SParams &param)

static void GetTrackNames(SConstScopedObject &object, TAnnotNameTitleMap &names, const TSeqRange &range, const ILayoutTrackFactory::SExtraParams &params)

virtual TTrackMap CreateTracks(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params=SExtraParams(), const TAnnotMetaDataList &src_annots=TAnnotMetaDataList()) const

CLDBlockTrackFactory.

virtual void GetMatchedAnnots(const TAnnotMetaDataList &src_annots, const ILayoutTrackFactory::SExtraParams &params, TAnnotNameTitleMap &out_annots) const

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

CLDBlockDS::SParams m_Params

bool x_IsOverviewMode() const

@ eLayout_Labels

Show labels and cascade features (CLayeredLayoutPolicy)

virtual void x_UpdateData()

update track content.

virtual void x_OnJobCompleted(CAppJobNotification &notify)

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

static CTrackTypeInfo m_TypeInfo

CLDBlockTrack.

virtual const CTrackTypeInfo & GetTypeInfo() const

CLDBlockTrack(CLDBlockDS *ds, CRenderingContext *r_cntx)

void x_CreateLayout(const CSGJobResult &result)

CLDFilterParams & GetData()

Data access.

void SetData(const CLDFilterParams &data)

void SetLengthExp(int value)

void SetTrackAttr(TTrackAttrFlags flags)

@ eIcon_Settings

icon id for track settings

void x_OnLayoutChanged()

update the layout.

void SetConfig(CRef< CSeqGraphicConfig > conf)

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

@ fFullTrack

track occupying the full horizontal screen.

void SetMsg(const string &msg)

CConstRef< CSeqGraphicConfig > x_GetGlobalConfig() const

Method for getting global configuration from rendering context.

CRef< CSeqGraphicConfig > m_gConfig

global configuration.

int TIconID

use int as TIconID instead of EIconID.

void x_RegisterIcon(const SIconInfo &icon)

register track icons.

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

const TSeqRange & GetVisSeqRange() const

const TModelUnit & GetScale() const

virtual bool AllJobsFinished() const

void SetJobListener(CEventHandler *listener)

Set JobDispatcher listener.

virtual void ClearJobID(TJobID job_id)

void SetDepth(int depth)

Set the annotation selector resolving depth.

virtual void DeleteAllJobs()

Remove waiting jobs from queue or cancel the unfinished jobs.

void SetAdaptive(bool flag)

CSGJobResult – the data structure holding the seqgraphic job results.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

CRenderingContext * m_Context

the rendering context

const CRenderingContext * GetRenderingContext() const

Get the rendering context.

list< CRef< CSeqGlyph > > TObjects

CTrackTypeInfo - holds description of a layout track type.

const string & GetDescr() const

const string & GetId() const

static void GetMatchedAnnots(const TAnnotMetaDataList &src_annots, const vector< string > &target_annots, const string &annot_type, const string &track_type, TAnnotNameTitleMap &out_annots)

Help function to find matched annotations.

ISGDSManager is seqgraphic data source manage that serves as an data source context.

virtual CIRef< ISGDataSource > GetDS(const string &type, SConstScopedObject &object)=0

Get a seqgraphic data source instance of the specified type.

iterator_bool insert(const value_type &val)

container_type::value_type value_type

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

CRef< CObject > GetResult() const

returns non-null pointer only if Completed or Running and has temporary results available

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

unsigned int

A callback function used to compare two keys in a database.

CRenderingContext * r_cntx

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