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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/layout_track_proxy.cpp Source File

: m_Order(param.GetOrder())

, m_Name(param.GetName())

, m_Id(param.

())

, m_DispName(param.GetDisplayName())

, m_Profile(param.GetTrackProfile())

, m_Source(param.GetSource())

, m_Category(param.GetCategory())

, m_Subcategory(param.GetSubcategory())

, m_SettingGroup(param.GetSettingGroup())

, m_UseGroupDefault(param.GetUseGroupDefault())

, m_Filter(param.m_Filter)

, m_SortBy(param.m_SortBy)

, m_Shown(param.GetShown())

, m_Help(param.m_Help)

, m_Expanded(param.GetExpanded())

, m_Realized(param.IsRealized())

, m_Comments(param.m_Comments)

, m_Highlights(param.m_Highlights)

, m_HighlightsColor(param.m_HighlightsColor)

, m_ShowTitle(param.m_ShowTitle)

, m_ErrorStatus(param.m_ErrorStatus)

, m_isPrivate(param.m_isPrivate)

, m_StoredScale(param.m_StoredScale)

, m_SubTracks(param.m_SubTracks)

, m_Subkey(param.m_Subkey)

, m_Annots(param.m_Annots)

, m_Action(param.m_Action)

, m_TimeStamp(param.m_TimeStamp)

, m_Batch(param.m_Batch)

, m_RemotePath(param.m_RemotePath)

, m_RemoteData(param.m_RemoteData)

, m_SeqDataKey(param.m_SeqDataKey)

, m_BigDataIndex(param.m_BigDataIndex)

(

== &param)

*

;

& name,

& filter,

& title)

(filter.empty()) {

name_modified(name);

((*iter)->GetName() == name_modified) {

name_modified(name);

((*iter)->GetName() == name_modified) {

((*iter)->GetTrackProfile().empty()) {

((*iter)->GetFilter().empty()) {

((*iter)->GetSortBy().empty()) {

((*iter)->GetSource().empty()) {

(*iter)->SetSource(name);

=

;

=

;

time_t defTimeStamp = time(

);

(defTimeStamp != -1) defTimeStamp -= 30 * 24 * 60 * 60;

name = iter->key;

vector<string> tokens;

(tokens.size() > 0) {

(tokens.size() > 1) {

proxies.push_back(track);

unordered_set<string> ExistingKeys;

(isMergeWithExisting) {

(

proxy: proxies) {

ExistingKeys.insert(proxy->GetKey());

time_t defTimeStamp = time(

);

= path +

;

(isMergeWithExisting && ExistingKeys.count(sKey)) {

track->SetTimeStamp(sub_view.

(

,

(defTimeStamp)));

vector<string> tokens;

(tokens.size() > 0) {

(tokens.size() > 1) {

(annot_str.empty()) {

track->SetAnnots(annots);

(!subtracks.empty())

track->SetSubTracks() = subtracks;

track->SetName(iter->key);

kMaxTrackSaved = 100;

delCount = settings.size() > kMaxTrackSaved ?

settings.size() - kMaxTrackSaved : 0;

it = settings.begin();

(it != settings.end() && delCount > 0) {

it = settings.erase(it);

*

(iter->GetPointer());

= path +

;

= path +

;

(pre_id == params->

()) {

(!params->

().empty()) {

(!full_params->

().empty()) {

(!full_params->

().empty()) {

(!full_params->

().empty()) {

CTrackProxy::TAnnots::iterator a_iter =

find(annots.begin(), annots.end(),

(a_iter != annots.end()) {

annots.erase(a_iter);

(!annots.empty()) {

first_one =

;

annots_str = *aa_iter;

annots_str +=

+ *aa_iter;

, m_DataKey(param.m_DataKey)

, m_ContShown(param.m_ContShown)

(

== &param)

*

;

static const string kDecimalDot

static CGuiRegistry & GetInstance()

access the application-wide singleton

class CRegistryReadView provides a nested hierarchical view at a particular key.

int GetInt(const string &key, int default_val=0) const

access a named key at this level, with no recursion

bool GetBool(const string &key, bool default_val=false) const

list< SKeyInfo > TKeys

retrieve information about all keys in the registry

void GetTopKeys(TKeys &keys) const

Retrieve information about the top level keys in this view.

string GetString(const string &key, const string &default_val=kEmptyStr) const

void Set(const string &key, int val)

access a named key at this level, with no recursion

const TTrackErrorStatus & GetErrorStatus() const

void UpdateNA_ChildVisibility(CTempTrackProxy &child) const

string m_Batch

AlignDb batch.

string m_Filter

track-specific filter

void SetShown(bool shown)

const string & GetSubkey() const

string m_SortBy

track-specific sortby

const string & GetHelp() const

void SetName(const string &name)

void SetCategory(const string &cat)

const string & GetCategory() const

bool m_Expanded

track expanded/collapsed.

CRef< CLayoutTrack > m_Track

the delegated layout track object.

bool m_Shown

track on/off state.

const string & GetDisplayName() const

virtual CRef< CTempTrackProxy > Clone() const

const string & GetSortBy() const

string m_BigDataIndex

The location of a remote data file containing the index.

TTrackProxies m_Children

settings for children tracks.

string m_HighlightsColor

Color to use for highlighting.

list< CRef< CTempTrackProxy > > TTrackProxies

CRef< CAnnotMetaData > m_NAdata

void SetSource(const string &src)

void SetFilter(const string &filter)

CConstRef< CTempTrackProxy > GetChildTempTrack(const string &name) const

Get track params for child temporary track.

const string & GetKey() const

void SetNAdata(CAnnotMetaData &na)

void SetHelp(const string &help)

vector< string > TSubTracks

string m_DispName

track display name.

int m_Order

track order for vertical ordering in its parent scope.

static void LoadFromRegistry(TTrackProxies &proxies, const string &path, bool isMergeWithExisting=false)

if isMergeWithExisting is true, then load should skip all registry tracks that have keys as in the al...

void SetTrackProfile(const string &profile)

bool m_UseGroupDefault

flag indicating if group default setting applies.

string m_Help

track help string

bool GetUseGroupDefault() const

const TAnnots & GetAnnots() const

string m_Category

track category.

static const string kAnonTrackName

CTempTrackProxy class implementation.

time_t GetTimeStamp() const

void SetSettingGroup(const string &name)

void SetSubcategory(const string &scat)

static void SaveToRegistry(const TTrackProxies &proxies, const string &path)

bool IsExtendedNA() const

check for an extended NA (named annotation::number, as used in e.g. SNP2)

const string & GetId() const

string m_Name

track name, may serve as track title.

string m_Profile

track profile (setting style or list of settings).

string m_Key

may be used for creating a track

const string & GetTrackProfile() const

void SetSortBy(const string &sort_by)

const TTrackProxies & GetChildren() const

TTrackErrorStatus m_ErrorStatus

static void ParseSubtracks(const string &subtracks_str, TSubTracks &subtracks)

convert a string with a list of subtracks to a list of subtracks

CTempTrackProxy & operator=(const CTempTrackProxy &param)

assignment operator.

void SetOrder(int order)

CTempTrackProxy class implementation.

string m_Subcategory

track sub-category.

bool m_Empty

The track proxy is empty.

void SetTimeStamp(time_t timeStamp)

const string & GetName() const

bool m_Realized

Has this been connected to any real track before.

void SetDisplayName(const string &name)

string m_Source

data source.

const CAnnotMetaData * GetNAdata() const

string m_Id

unique track identifier.

const string & GetSource() const

const string & GetSettingGroup() const

void SetUseGroupDefault(bool flag)

string m_SettingGroup

setting group name.

string m_RemotePath

Track remote path.

const string & GetSubcategory() const

CRef< CTempTrackProxy > AddTempTrack(const string &name, const string &title)

add a new template track params.

string m_Subkey

may be used for creating DataSource

void SetErrorStatus(const TTrackErrorStatus &ErrorStatus)

TAnnots m_Annots

can be 'Unnamed', 'Named', or annot names

const string & GetFilter() const

CTrackProxy data structure contains information about the position of a track in its parent scope,...

virtual CRef< CTempTrackProxy > Clone() const

string m_DataKey

user-data net storage key (SViewer only)

CTrackProxy & operator=(const CTrackProxy &param)

string m_DB

data source DB name

bool GetContShown() const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

static bool IsNAA(const string &annot, bool isStrict=false)

check if a given annotation is a named annotation accession[.version][number] when isSctrict == false...

static const string & NameTypeValueToStr(TAnnotNameType type)

string m_SubCategory

annotation subcategory

static const string & GetUnnamedAnnot()

Get the commonly used symbol representing a unnnamed annotation.

string m_Title

annotation title

static bool IsNAA_Name(const string &annot)

check if a given annotation is a named annotation name with '.' replaced with '_'.

static bool IsExtendedNAA(const string &annot, bool isStrict=false)

check if a given annotation is an extended NAA (named accession[.version][number],...

string m_Name

annotation name, e.g. named annotation accession

@ eAnnot_All

all annotations

static void TokenizeWithEscape(const string &str, const string &delim, vector< string > &tokens, bool remove_escape=false)

Tokenize a string using the delim.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StringToBool(const CTempString str)

Convert string to bool.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static string & Replace(const string &src, const string &search, const string &replace, string &dst, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

static const string k_help

static const string k_display_name

static void s_LoadTempTrackRecursive(CTempTrackProxy::TTrackProxies &proxies, const string &path)

static const string k_key

static const string k_track_profile

static const string k_setting_group

static const string k_category

static const string k_order

static const string k_expanded

static const string k_subtracks

static const string k_time_stamp

static const string k_subcategory

static const string k_subkey

static const string k_shown

static const string k_sortby

static const string k_trid

static const string k_filter

static const string k_annots

static const string k_annot_separation

const struct ncbi::grid::netcache::search::fields::KEY key

static bool s_CompareCRefs(const CRef< CTempTrackProxy > &t1, const CRef< CTempTrackProxy > &t2)

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