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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/latlon__tool_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/latlon_tool.cpp Source File

42 #include <wx/msgdlg.h> 68

wxWindowID

id

,

const

wxString& caption,

const

wxPoint& pos,

const

wxSize&

size

,

long

style ) : m_TopSeqEntry(seh)

71  for

( ; b_iter ; ++b_iter )

75  if

(!

m_Found

&& b_iter->GetSeq_entry_Handle().HasParentEntry())

80  Create

(parent,

id

, caption, pos,

size

, style);

86 bool CLatLonTool::Create

( wxWindow* parent, wxWindowID

id

,

const

wxString& caption,

const

wxPoint& pos,

const

wxSize&

size

,

long

style )

88

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

89

wxDialog::Create( parent,

id

, caption, pos,

size

, style );

94

GetSizer()->SetSizeHints(

this

);

120

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

121

itemDialog1->SetSizer(itemBoxSizer2);

123

wxBoxSizer* itemBoxSizer3 =

new

wxBoxSizer(wxHORIZONTAL);

124

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

126

wxArrayString itemChoiceStrings, itemChoiceStringsWritable;

130

wxMessageBox(

wxT

(

"No LatLon records found"

),

wxT

(

"Error"

), wxOK | wxICON_ERROR);

137

wxMessageBox(

wxT

(

"No LatLon records found or all records correctly formatted"

),

wxT

(

"Error"

), wxOK | wxICON_ERROR);

143

itemBoxSizer3->Add(

m_GridPanel

, 0, wxALIGN_TOP|wxALL, 5);

146  m_Grid

->SetTable(gridAdapter,

true

);

147  m_Grid

->AutoSizeColumns();

148  int

l_height =

m_Grid

->GetColLabelSize();

149  m_Grid

->SetColLabelSize( 2 * l_height );

156  if

((*it)->IsSetHeader() && (*it)->GetHeader().IsSetTitle() )

158  string

title = (*it)->GetHeader().GetTitle();

161

itemChoiceStrings.Add(wxString(title));

163

itemChoiceStringsWritable.Add(wxString(title));

172  if

(glyph_col >= 0 && glyph_col+1 <

m_Grid

->GetNumberCols())

178

wxBoxSizer* itemBoxSizer4 =

new

wxBoxSizer(wxHORIZONTAL);

179

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

184

wxBoxSizer* itemBoxSizer13 =

new

wxBoxSizer(wxHORIZONTAL);

185

itemBoxSizer2->Add(itemBoxSizer13, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

187

wxButton* itemButton14 =

new

wxButton( itemDialog1, wxID_OK,

_

(

"Accept"

), wxDefaultPosition, wxDefaultSize, 0 );

188

itemBoxSizer13->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

190

wxButton* itemButton15 =

new

wxButton( itemDialog1, wxID_CANCEL,

_

(

"Cancel"

), wxDefaultPosition, wxDefaultSize, 0 );

191

itemBoxSizer13->Add(itemButton15, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

202

expand_col->

SetHeader

().SetTitle(

""

);

203

expand_col->

SetHeader

().SetField_name(

"expand"

);

204

expand_col->

SetData

().SetString();

207

current_col->

SetHeader

().SetTitle(

"Current Lat-Lon"

);

208

current_col->

SetHeader

().SetField_name(

"current"

);

209

current_col->

SetData

().SetString();

212

suggested_col->

SetHeader

().SetTitle(

"Suggested Correction"

);

213

suggested_col->

SetHeader

().SetField_name(

"suggested"

);

214

suggested_col->

SetData

().SetString();

220

bogus_col->

SetHeader

().SetField_name(

""

);

221

bogus_col->

SetData

().SetString();

224  table

->SetColumns().push_back(id_col);

225  table

->SetColumns().push_back(expand_col);

226  table

->SetColumns().push_back(current_col);

227  table

->SetColumns().push_back(suggested_col);

228  table

->SetColumns().push_back(bogus_col);

232  for

( vector<string>::iterator fi =

m_LatLon

.begin(); fi !=

m_LatLon

.end() ; ++fi )

235  if

(suggested == *fi)

239

id_col->

SetData

().SetId().push_back(

id

);

240

expand_col->

SetData

().SetString().push_back(

""

);

241

current_col->

SetData

().SetString().push_back(*fi);

242

suggested_col->

SetData

().SetString().push_back(suggested);

243

bogus_col->

SetData

().SetString().push_back(

""

);

255  bool

select_all =

false

;

258  if

(wxMessageBox(

ToWxString

(

"Apply to all?"

),

wxT

(

"Nothing is selected"

), wxOK | wxCANCEL,

NULL

) == wxOK)

267  for

(

size_t row

= 0;

row

< values_table->

GetColumn

(

"current"

).GetData().GetString().

size

(); ++

row

)

271  if

(!current.empty() && !suggested.empty() && current != suggested && (

m_Grid

->IsInSelection(

static_cast<int>

(

row

),0) || select_all))

277  for

( ; b_iter ; ++b_iter )

297  return "Invalid operation in LatLon Tool"

;

357

wxMessageDialog dlg(

this

,

_

(

"Discard modifications?"

),

_

(

"Attention"

),wxOK|wxCANCEL|wxCENTRE);

358  if

(dlg.ShowModal() == wxID_OK)

374  string

latlon = (*subsource)->GetName();

386  bool

modified =

false

;

391  string

latlon = (*subsource)->GetName();

407  if

((*it)->IsSource()) {

414  if

((*it)->IsSource()) {

417

new_desc->

Assign

(orig_desc);

446

new_feat->

Assign

(feat_it->GetOriginalFeature());

void AddCommand(IEditCommand &command)

void MakeColumnReadOnly(int pos, bool val=true)

void InitColumnCollapse(int col)

CRef< objects::CSeq_table > GetValuesTable()

namespace ncbi::objects::

const CSeqTable_column & GetColumn(CTempString column_name) const

static string FixLatLonFormat(string orig_lat_lon, bool guess=false)

const_iterator end() const

const_iterator find(const key_type &key) const

const char * kSequenceIdColLabel

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CSeq_entry_Handle GetSeq_entryHandle(CDataLoader *loader, const TBlobId &blob_id, EMissing action=eMissing_Default)

Get Seq-entry handle by its blob-id, with possible loading.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

CScope & GetScope(void) const

Get scope this handle belongs to.

bool HasParentEntry(void) const

Check if current seq-entry has a parent.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

@ eSubtype_lat_lon

+/- decimal degrees

const TColumns & GetColumns(void) const

Get the Columns member data.

void SetHeader(THeader &value)

Assign a value to Header data member.

vector< CRef< CSeqTable_column > > TColumns

void SetData(TData &value)

Assign a value to Data data member.

TNum_rows GetNum_rows(void) const

Get the Num_rows member data.

const TString & GetString(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

@ eField_id_location_id

location Seq-id

void SetData(TData &value)

Assign a value to Data data member.

const TSet & GetSet(void) const

Get the variant data.

bool IsSet(void) const

Check if variant Set is selected.

TSource & SetSource(void)

Select the variant.

@ eMol_na

just a nucleic acid

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const struct ncbi::grid::netcache::search::fields::SIZE size

Utility macros and typedefs for exploring NCBI objects from seqfeat.asn.

#define FOR_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

FOR_EACH_SUBSOURCE_ON_BIOSOURCE EDIT_EACH_SUBSOURCE_ON_BIOSOURCE.

#define EDIT_EACH_SUBSOURCE_ON_BIOSOURCE(Itr, Var)

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

#define row(bind, expected)

wxString ToWxString(const string &s)

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