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NCBI C++ ToolKit: src/objtools/readers/hgvs/irep_to_seqfeat_common.cpp Source File

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14  if

(seq_literal.IsNull()) {

15  delta

->SetSeq().SetThis();

18  delta

->SetSeq().SetLiteral(*seq_literal);

21  if

(

count

.IsRange() ) {

22  const auto

& range =

count

.GetRange();

23  if

( !range.IsSetStart() ||

25

(range.GetStart().IsUnknown() && range.GetStop().IsUnknown())

31  const auto

& start = range.GetStart();

32  const auto

& stop = range.GetStop();

34  if

( start.IsUnknown() ) {

36  delta

->SetMultiplier() = stop.GetVal();

38  else if

( stop.IsUnknown() ) {

40  delta

->SetMultiplier() = start.GetVal();

42  auto min

= start.GetVal();

43  auto max

= stop.GetVal();

46  string

err_string =

"Reversed range limits"

;

52  delta

->SetMultiplier_fuzz().SetRange().SetMin(

min

);

53  delta

->SetMultiplier_fuzz().SetRange().SetMax(

max

);

58  if

(

count

.IsVal()) {

59

multiplier =

count

.GetVal();

61  else if

(

count

.IsFuzzy_val()) {

62

multiplier =

count

.GetFuzzy_val();

65  if

( multiplier < 1 ) {

68  delta

->SetMultiplier() = multiplier;

User-defined methods of the data storage class.

int TSignedSeqPos

Type for signed sequence position.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Warning(CExceptionArgs_Base &args)

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Int4 delta(size_t dimension_, const Int4 *score_)


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