((*iter)->GetType().IsStr() &&
64(*iter)->GetType().GetStr() ==
"Support"&&
65(*iter)->GetFieldRef(
"Total") &&
66!(*iter)->GetFieldRef(
"Total").IsNull()) {
67 const auto& d = (*iter)->GetFieldRef(
"Total")->GetData();
84 if((*iter)->GetType().IsStr() &&
NStr::EqualNocase((*iter)->GetType().GetStr(),
"Splice Sequence")) {
89 const string& acceptor_str = acceptor->
GetData().
GetStr();
const objects::CSeq_feat & GetFeature(void) const
Access the original feature.
virtual bool IsConsensus() const
Check if (intron) feature is consensus or not.
virtual void GetAccessoryLabel(string &accessory_label) const
Some features may have an accessory label on top (e.g. introns)
int m_ReadCount
Number of reads supprtoing this intron Initialized from feature's user object.
CIntronGlyph(const objects::CMappedFeat &feat, ELinkedFeatDisplay LinkedFeat=ELinkedFeatDisplay::eLFD_Default)
CConstRef< CUser_field > GetFieldRef(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const
Return a field reference representing the tokenized key, or a NULL reference if the key doesn't exist...
bool IsConsensusSplice(const string &splice5, const string &splice3)
Consensus splice is GY..AG or AT..AC.
#define ITERATE(Type, Var, Cont)
ITERATE macro to sequence through container elements.
bool IsNull(void) const THROWS_NONE
Check if pointer is null â same effect as Empty().
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
static string IntToString(int value, TNumToStringFlags flags=0, int base=10)
Convert int to string.
static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)
Case-insensitive equality of a substring with another string.
const TStr & GetStr(void) const
Get the variant data.
const TData & GetData(void) const
Get the Data member data.
bool IsStr(void) const
Check if variant Str is selected.
list< CRef< CUser_object > > TExts
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