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NCBI C++ ToolKit: src/algo/phy_tree/fastme/inputs.cpp Source File

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82

fprintf(stderr,

"Error leaf %s in meTree not in distance matrix.\n"

,v->

label

);

91

fprintf(stderr,

"Error leaf %s in meTree not in distance matrix.\n"

,v->

label

);

99

fprintf(ofile,

"(v1:0.0)v2;"

);

101

fprintf(stderr,

"Error meNode %s in matrix but not a leaf in tree.\n"

,X->

firstNode

->

label

);

125

printf(

"Problem inputting size.\n"

);

150  table

[

i

][j] = table_in[

i

][j];

163  if

(!(fscanf(ifile,

"%s"

,nextString)))

165

fprintf(stderr,

"Error loading input matrix.\n"

);

168

*

size

= atoi(nextString);

171

printf(

"Problem inputting size.\n"

);

179  if

(!(fscanf(ifile,

"%s"

,nextString)))

181

fprintf(stderr,

"Error loading label %d.\n"

,

i

);

189  if

(!(fscanf(ifile,

"%s"

,nextString)))

191

fprintf(stderr,

"Error loading (%d,%d)-entry.\n"

,

i

,j);

194  table

[

i

][j++] = atof(nextString);

meSet * addToSet(meNode *v, meSet *X)

meNode * makeNewNode(const char *label, int i)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

void freeMatrix(double **D, int size)

void partitionSizes(meTree *T)

void compareSets(meTree *T, meSet *S, FILE *ofile)

double ** loadMatrix(double **table_in, char **labels, int *size_in, meSet *S)

double ** loadMatrixOLD(FILE *ifile, int *size, meSet *S)

meEdge * depthFirstTraverse(meTree *T, meEdge *e)

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const struct ncbi::grid::netcache::search::fields::SIZE size

int strcmp(const char *str1, const char *str2)

struct meEdge * rightEdge

struct meSet * secondNode

struct meNode * firstNode

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