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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/influenza__set_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/cleanup/influenza_set.cpp Source File

m_FluType = GetInfluenzaType(

);

m_Required = GetNumRequired(m_FluType);

(pOrgMod->IsSetSubtype() && pOrgMod->IsSetSubname()) {

strain = pOrgMod->GetSubname();

serotype = pOrgMod->GetSubname();

org.

() +

+ strain +

+ serotype;

foundSeg =

;

(pSubSource && pSubSource->IsSetSubtype() && pSubSource->IsSetName() &&

(segment < 1 || segment > numRequired ) {

segsFound.

(segment);

@ eExtreme_Biological

5' and 3'

CBioseq_set_EditHandle –.

static size_t GetNumRequired(EInfluenzaType fluType)

static EInfluenzaType GetInfluenzaType(const string &taxname)

static string GetKey(const COrg_ref &org)

void AddBioseq(CBioseq_Handle bsh)

vector< CBioseq_Handle > TMembers

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

iterator_bool insert(const value_type &val)

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

TClass GetClass(void) const

void Remove(void) const

Remove this Seq-entry from parent, or scope if it's top level Seq-entry.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

CSeq_entry_EditHandle AttachEntry(CSeq_entry &entry, int index=-1) const

Attach an existing seq-entry.

bool IsSetClass(void) const

CSeq_entry_EditHandle AttachEntry(CSeq_entry &entry, int index=-1) const

Attach an existing seq-entry.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

SAnnotSelector & IncludeFeatType(TFeatType type)

Include feature type in the search.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static size_t StringToSizet(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to size_t.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

@ fConvErr_NoThrow

Do not throw an exception on error.

@ eNocase

Case insensitive compare.

const TSubtype & GetSubtype(void) const

Get the Subtype member data.

bool IsSetSubtype(void) const

Check if a value has been assigned to Subtype data member.

const TMod & GetMod(void) const

Get the Mod member data.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

bool IsSetMod(void) const

Check if a value has been assigned to Mod data member.

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

bool IsSetTaxname(void) const

preferred formal name Check if a value has been assigned to Taxname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

TSet & SetSet(void)

Select the variant.

void SetClass(TClass value)

Assign a value to Class data member.

@ eClass_nuc_prot

nuc acid and coded proteins

@ eClass_small_genome_set

viral segments or mitochondrial minicircles

const TSource & GetSource(void) const

Get the variant data.

@ e_Source

source of materials, includes Org-ref

bool g_FindSegs(const CBioSource &src, size_t numRequired, set< size_t > &segsFound)

const struct ncbi::grid::netcache::search::fields::KEY key

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