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NCBI C++ ToolKit: src/objtools/readers/idmapper_scope.cpp Source File

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it->GetSeqId()->GetMatchingIds(matches);

static CRef< CScope > m_Scope

void x_Init(const CSeq_id_Handle &focus_idh)

CIdMapperScope(CScope &scope, const CSeq_id_Handle &focus_idh)

Initialize the mapper using the scope and the focus seq-id handle.

void x_AddMappings(const CBioseq_Handle &bh)

virtual void AddMapping(const CSeq_id_Handle &from, const CSeq_id_Handle &to)

Add a mapping to the internal mapping table.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

vector< CSeq_id_Handle > TId

const TId & GetId(void) const

CSeqMap::ESegmentType GetType(void) const

CSeq_id_Handle GetRefSeqid(void) const

The following function makes sense only when the segment is a reference to another seq.

@ eSeqRef

reference to Bioseq

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

Selector used in CSeqMap methods returning iterators.

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