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NCBI C++ ToolKit: include/sra/data_loaders/snp/impl/id2snp_impl.hpp Source File

CID2SNPProcessorParams;

CID2SNPProcessorState;

& driver_name =

);

CID2SNPProcessorParams& params,

CID2SNPProcessorParams& params,

CID2SNPProcessorState&

,

& acc_ver);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

vector< CRef< CID2_Request > > TRequests

vector< CRef< CID2_Reply > > TReplies

map< TSerialNumber, SRequestInfo > TSNPRequests

TSNPRequests m_SNPRequests

CRef< CID2SNPProcessorParams > CreateParameters(void)

CRef< CSerialObject > x_LoadBlob(CID2SNPContext &context, SSNPEntryInfo &info)

static bool x_GetAccVer(string &acc_ver, const CSeq_id &id)

static void x_AddSeqIdRequest(CID2_Request_Get_Seq_id &request, CID2SNPProcessorPacketContext::SRequestInfo &info)

CID2_Blob_Id & x_GetBlobId(SSNPEntryInfo &id)

CRef< CID2SNPProcessorContext > CreateContext(void)

void ProcessReply(CID2_Reply &reply, CID2SNPProcessorParams &params, CID2SNPProcessorState &state, TReplies &replies)

bool x_IsSNPNA(const string &s)

void x_ProcessReplyGetBlobId(CID2SNPContext &context, CID2SNPProcessorPacketContext &packet_context, CID2_Reply &main_reply, TReplies &replies, CID2SNPProcessorPacketContext::SRequestInfo &info, CID2_Reply_Get_Blob_Id &reply)

limited_size_map< string, CSNPDb > TSNPDbCache

void WriteData(CID2SNPContext &context, const SSNPEntryInfo &seq, CID2_Reply_Data &data, const CSerialObject &obj)

CRef< CID2SNPProcessorState > ProcessPacket(CID2_Request_Packet &packet, CID2SNPProcessorParams &params, TReplies &replies)

bool WorthCompressing(const SSNPEntryInfo &seq)

EProcessStatus x_ProcessGetChunks(CID2SNPContext &context, CID2SNPProcessorPacketContext &packet_context, TReplies &replies, CID2_Request &main_request, CID2S_Request_Get_Chunks &request)

CID2SNPContext m_InitialContext

SSNPEntryInfo x_ResolveBlobId(const CID2_Blob_Id &id)

bool ExcludedBlob(SSNPEntryInfo &seq, const CID2_Request_Get_Blob_Info &request)

void SetBlobState(CID2SNPContext &context, CID2_Reply &main_reply, int blob_state)

vector< CRef< CID2_Reply > > TReplies

const CID2SNPContext & GetInitialContext(void) const

CRef< CSerialObject > x_LoadChunk(CID2SNPContext &context, SSNPEntryInfo &entry, int chunk_id)

CSNPDbSeqIterator & GetSeqIterator(SSNPEntryInfo &seq)

EProcessStatus x_ProcessGetBlobId(CID2SNPContext &context, CID2SNPProcessorPacketContext &packet_context, TReplies &replies, CID2_Request &main_request, CID2_Request_Get_Blob_Id &request)

void InitContext(CID2SNPContext &context, const CID2_Request &main_request)

CSNPDb GetSNPDb(const string &na)

~CID2SNPProcessor_Impl(void)

EProcessStatus x_ProcessGetBlobInfo(CID2SNPContext &context, CID2SNPProcessorPacketContext &packet_context, TReplies &replies, CID2_Request &main_request, CID2_Request_Get_Blob_Info &request)

void x_ProcessReplyGetSeqId(CID2SNPContext &context, CID2SNPProcessorPacketContext &packet_context, CID2_Reply &main_reply, TReplies &replies, CID2SNPProcessorPacketContext::SRequestInfo &info, CID2_Reply_Get_Seq_id &reply)

void ResetIteratorCache(SSNPEntryInfo &seq)

CID2SNPProcessor_Impl(const CConfig::TParamTree *params=0, const string &driver_name=kEmptyStr)

CID2S_Request_Get_Chunks –.

CID2_Reply_Get_Blob_Id –.

CID2_Reply_Get_Seq_id –.

CID2_Request_Get_Blob_Id –.

CID2_Request_Get_Blob_Info –.

CID2_Request_Get_Seq_id –.

Base class for all serializable objects.

Adaptation of CThread class repeatedly running some job.

definition of a Culling tree

Include a standard set of the NCBI C++ Toolkit most basic headers.

Generic map with size limited by some number.

Parameters initialization model.

Multi-threading – mutexes; rw-locks; semaphore.

vector< SSNPDbTrackInfo > m_SNPTracks

DECLARE_OPERATOR_BOOL(m_Valid)

CSNPDbSeqIterator m_SeqIter

CRef< CID2_Blob_Id > m_BlobId

static CS_CONTEXT * context

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