A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/id2snp__impl_8cpp.html below:

NCBI C++ ToolKit: src/sra/data_loaders/snp/id2snp_impl.cpp File Reference

Go to the source code of this file.

Go to the SVN repository for this file.

enum   EResolveMaster {
  eResolveMaster_never , eResolveMaster_without_gi , eResolveMaster_always , eResolveMaster_never ,
  eResolveMaster_without_gi , eResolveMaster_always
}   enum   EDebugLevel {
  eTraceError = 1 , eTraceOpen = 2 , eTraceConn = 4 , eTraceASN = 5 ,
  eTraceASNData = 8 , eDebug_none = 0 , eDebug_error = 1 , eDebug_open = 2 ,
  eDebug_request = 5 , eDebug_replies = 6 , eDebug_resolve = 7 , eDebug_data = 8 ,
  eDebug_all = 9
}     NCBI_DEFINE_ERR_SUBCODE_X (24)     BEGIN_NAMESPACE (objects)     NCBI_PARAM_DECL (bool, ID2SNP, ENABLE)     NCBI_PARAM_DEF_EX (bool, ID2SNP, ENABLE, true, eParam_NoThread, ID2SNP_ENABLE)     NCBI_PARAM_DECL (int, ID2SNP, DEBUG)     NCBI_PARAM_DEF_EX (int, ID2SNP, DEBUG, eDebug_error, eParam_NoThread, ID2SNP_DEBUG)     NCBI_PARAM_DECL (bool, ID2SNP, FILTER_ALL)     NCBI_PARAM_DEF_EX (bool, ID2SNP, FILTER_ALL, true, eParam_NoThread, ID2SNP_FILTER_ALL)   static bool  s_Enabled (void)   static int  s_DebugLevel (void)   static bool  s_DebugEnabled (EDebugLevel level)   static bool  s_FilterAll (void)   template<class Cont > Cont::value_type::TObjectType &  sx_AddNew (Cont &cont)   void  sx_SetZoomLevel (CSeq_annot &annot, int zoom_level)   bool  IsValidNAIndex (size_t na_index)   bool  IsValidNAVersion (size_t na_version)   bool  IsValidSeqIndex (size_t seq_index)   bool  IsValidFilterIndex (size_t filter_index)   string  GetNAAccession (const SSNPDbTrackInfo &track)   string  FormatTrack (const SSNPDbTrackInfo &track)   SSNPDbTrackInfo  ParseTrack (CTempString acc_filter)   CNcbiOstream &  operator<< (CNcbiOstream &out, const CID2SNPProcessor_Impl::SSNPEntryInfo &seq)   size_t  sx_GetSize (const CID2_Reply_Data &data)   template<class Values > bool  sx_HasNonZero (const Values &values, TSeqPos index, TSeqPos count)   template<class TValues > void  sx_AddBits2 (vector< char > &bits, TSeqPos bit_values, TSeqPos pos_index, const TValues &values)   static void  sx_AddBits (vector< char > &bits, TSeqPos kChunkSize, const CSeq_graph &graph)     END_NAMESPACE (objects)   ◆ DEFAULT_COMPRESS_DATA ◆ DEFAULT_INDEX_UPDATE_TIME ◆ DEFAULT_VDB_CACHE_SIZE ◆ NCBI_USE_ERRCODE_X #define NCBI_USE_ERRCODE_X   ID2SNPProcessor

Definition at line 61 of file id2snp_impl.cpp.

◆ START_TRACE ◆ TRACE_PROCESSING ◆ TRACE_X #define TRACE_X (   t,   l,   m  ) Value:

do { \

} \

} while(0)

void Info(CExceptionArgs_Base &args)

double Elapsed(void) const

Return time elapsed since first Start() or last Restart() call (in seconds).

static bool s_DebugEnabled(EDebugLevel level)

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

Definition at line 286 of file id2snp_impl.cpp.

◆ EDebugLevel Enumerator eTraceError  eTraceOpen  eTraceConn  eTraceASN  eTraceASNData  eDebug_none  eDebug_error  eDebug_open  eDebug_request  eDebug_replies  eDebug_resolve  eDebug_data  eDebug_all 

Definition at line 82 of file id2snp_impl.cpp.

◆ EResolveMaster Enumerator eResolveMaster_never  eResolveMaster_without_gi  eResolveMaster_always  eResolveMaster_never  eResolveMaster_without_gi  eResolveMaster_always 

Definition at line 69 of file id2snp_impl.cpp.

◆ BEGIN_NAMESPACE() BEGIN_NAMESPACE ( objects  ) ◆ END_NAMESPACE() END_NAMESPACE ( objects  ) ◆ FormatTrack() ◆ GetNAAccession() ◆ IsValidFilterIndex() bool IsValidFilterIndex ( size_t  filter_index ) ◆ IsValidNAIndex() bool IsValidNAIndex ( size_t  na_index ) ◆ IsValidNAVersion() bool IsValidNAVersion ( size_t  na_version ) ◆ IsValidSeqIndex() bool IsValidSeqIndex ( size_t  seq_index ) ◆ NCBI_DEFINE_ERR_SUBCODE_X() NCBI_DEFINE_ERR_SUBCODE_X ( 24  ) ◆ NCBI_PARAM_DECL() [1/3] NCBI_PARAM_DECL ( bool  , ID2SNP  , ENABLE    ) ◆ NCBI_PARAM_DECL() [2/3] NCBI_PARAM_DECL ( bool  , ID2SNP  , FILTER_ALL    ) ◆ NCBI_PARAM_DECL() [3/3] NCBI_PARAM_DECL ( int  , ID2SNP  , DEBUG    ) ◆ NCBI_PARAM_DEF_EX() [1/3] ◆ NCBI_PARAM_DEF_EX() [2/3] ◆ NCBI_PARAM_DEF_EX() [3/3] ◆ operator<<() ◆ ParseTrack()

Definition at line 236 of file id2snp_impl.cpp.

References CTempString::empty(), NStr::fConvErr_NoThrow, CTempString::find(), IsValidFilterIndex(), IsValidNAIndex(), IsValidNAVersion(), kFilterIndexMaxLength, kNAIndexDigits, kNALengthMax, kNALengthMin, SSNPDbTrackInfo::m_FilterIndex, SSNPDbTrackInfo::m_NAIndex, SSNPDbTrackInfo::m_NAVersion, NPOS, CTempString::size(), and CTempString::substr().

Referenced by CID2SNPProcessor_Impl::x_ProcessGetBlobId().

◆ s_DebugEnabled() ◆ s_DebugLevel() ◆ s_Enabled() ◆ s_FilterAll() ◆ sx_AddBits()

Definition at line 706 of file id2snp_impl.cpp.

References _ASSERT, CSeq_graph_Base::C_Graph::GetByte(), CSeq_graph_Base::GetComp(), CSeq_interval_Base::GetFrom(), CSeq_graph_Base::GetGraph(), CSeq_loc_Base::GetInt(), CSeq_graph_Base::C_Graph::GetInt(), CSeq_interval::GetLength(), CSeq_graph_Base::GetLoc(), CSeq_graph_Base::GetNumval(), CByte_graph_Base::GetValues(), CInt_graph_Base::GetValues(), CSeq_graph_Base::C_Graph::IsByte(), kChunkSize, and sx_AddBits2().

Referenced by CID2SNPProcessor_Impl::x_LoadBlob().

◆ sx_AddBits2() ◆ sx_AddNew()

template<class Cont >

Cont::value_type::TObjectType& sx_AddNew ( Cont &  cont ) ◆ sx_GetSize() ◆ sx_HasNonZero() ◆ sx_SetZoomLevel() ◆ BEGIN_LOCAL_NAMESPACE ◆ BEGIN_NCBI_NAMESPACE ◆ END_LOCAL_NAMESPACE ◆ END_NCBI_NAMESPACE ◆ kChunkIdFeat ◆ kChunkIdGraph ◆ kChunkIdMul ◆ kFeatChunkSize ◆ kFilterIndexCount ◆ kFilterIndexMaxLength ◆ kGraphChunkSize ◆ kNAIndexDigits ◆ kNAIndexMax ◆ kNAIndexMin ◆ kNALengthMax ◆ kNALengthMin ◆ kNAVersionDigitsMax ◆ kNAVersionDigitsMin ◆ kNAVersionMax ◆ kNAVersionMin ◆ kResolveMaster ◆ kSeqIndexCount ◆ kSNPSatBase ◆ kTSEId ◆ sw

Definition at line 277 of file id2snp_impl.cpp.

Referenced by CBuildDatabase::AddSequences(), BOOST_AUTO_TEST_CASE(), CBuildDatabase::Build(), CPhyloTreePS::CalcForces(), call_get_stack_size(), call_with_args(), CBamFileInfo::CBamFileInfo(), CompressAssembly(), emit_stack_frame_release(), CBDB_Cache::EvaluateTimeLine(), CExecute::Exec(), CMacroWorker::ExecuteMacros(), CFlatFileGenerator::Generate(), CSNPDataLoader_Impl::GetBlobByIdOnce(), GetBlobReader(), CSNPDataLoader_Impl::GetChunkOnce(), CSNPFileInfo::InitializeDb(), CBamRefSeqInfo::LoadAlignChunk(), CSNPDataLoader_Impl::LoadBlob(), CBamRefSeqInfo::LoadMainSplit(), CBamRefSeqInfo::LoadPileupChunk(), CBamRefSeqInfo::LoadSeqChunk(), CBDB_SplitTest::LoadSplitStore(), CBDB_SplitTest::LoadTestSet(), CConnTestThread::Main(), CChainer::CChainerImpl::MakeChains(), CSeqGraphicWidget::OnDataChanged(), CLBLASTUIDataSource::Open(), CNetBLASTUIDataSource::Open(), CBamUIDataSource::Open(), CGenBankUIDataSource::Open(), CSQLITE3_Cache::Open(), CAlignSort::SAlignExtractor::operator()(), CQueryExecEvalFunc::operator()(), operator<<(), CSequenceInputStats::PrintReport(), CBam2GraphApp::ProcessFile(), CGlCgiImageApplication::ProcessRequest(), CBamIndex::Read(), CBiosampleChkApp::ReadClassMember(), CAsnvalThreadState::ReadClassMember(), CSeqDescrRetrievalJob::Run(), CAnnotMetaDataJob::Run(), CPubmedFetchApplication::Run(), CBlastInputDemoApplication::Run(), CAsnCacheTestApplication::Run(), CCacheIndexCopyApp::Run(), CConcatSeqEntriesApplication::Run(), CAsnCacheDumpSeqIdsApplication::Run(), CAsnSubCacheCreateApplication::Run(), CWalkAsnCacheApplication::Run(), CDemoApp::Run(), CMytestApplication::Run(), CProjBulderApp::Run(), CObjConvProfile::Run(), CSampleNetScheduleClient::Run(), CConvImageApp::Run(), CSubImageApp::Run(), s_GetDBTree(), CSparseGraph::Save(), CCachedTaxon3_impl::SendOrgRefList(), skip_frames_before_return(), sljit_emit_enter(), sljit_emit_get_return_address(), sljit_emit_mem(), sljit_emit_op_dst(), sljit_set_context(), tail_call_reg_arg_with_args(), tail_call_with_args(), UncomressAndCreate(), CPhyloTreePS::Update(), CAsnvalThreadState::ValidateTraditionally(), CAsnvalThreadState::ValidateWorker(), CThread::WaitForAllThreads(), CBuildDatabase::x_AddRemoteSequences(), CPrimeCacheApplication::x_CacheSeqEntry(), CForceJob::x_Calculate(), CImportFeatTable::x_CreateCommand(), CAlnMultiDSBuilder::x_CreateSparseDataSource(), CComponentSearchJob::x_DoSearch(), CVcfSearchJob::x_DoSearch(), CCrossPanelIR::x_DrawCrossAlignment(), CBuildDatabase::x_DupLocal(), CBlastVdbCmdApp::x_FormatRuntime(), CNAUtils::x_GetAllNAIds(), CNAUtils::x_GetNAMetaData(), CRemoteBlast::x_GetRequestInfoFromRID(), CRemoteBlast::x_GetSubjects(), CBlastVdbCmdApp::x_GetVDBBlastUtil(), CCSRARefSeqInfo::x_LoadRangesStat(), CBlastVdbCmdApp::x_PrintBlastDatabaseInformation(), CBlastVdbCmdApp::x_PrintVDBPaths(), CPrimeCacheApplication::x_Process_Fasta(), CPrimeCacheApplication::x_Process_Ids(), CNetScheduleHandler::x_ProcessMsgBatchSubmit(), CId2FetchApp::x_ProcessRequest(), CBGZFFile::x_ReadBlock(), CPagedFile::x_ReadPage(), CRemoteBlast::x_SendRequest(), CAlignTabExportPage2::x_StartNAAlignNamesJob(), CReadIndexSpeedApp::x_WalkIndex(), and CEditObjectFeaturePropagate::xGetEditCommandAllSequences().

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4