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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/hydra__client_8cpp_source.html below:

NCBI C++ ToolKit: src/misc/hydra_client/hydra_client.cpp Source File

54 bool error

(

const string

& message);

55 bool warning

(

const string

& message);

58 bool text

(

const string

& contents);

75 return "pubmed_search_citation_top_20.1"

;

78 return "pubmed_search_citation.1"

;

84 return "pmc_citation.1"

;

87 return "pmc_citation_top_6.1"

;

90 return "pubmed_search_citation_top_20.1"

;

98 string

hostname =

"www.ncbi.nlm.nih.gov"

;

99 string

path =

"/projects/hydra/hydra_search.cgi"

;

100 string

args =

"search=@SEARCHTYPE@&query="

;

109 for

(

int

attempt = 1; attempt <= 5; attempt++) {

120 return m_Uids

.size() > 0;

128 int

sleep_secs = ::sqrt((

double

)attempt);

152

attrs_type::const_iterator it = attrs.find(

"score"

);

153 if

(it != attrs.end()) {

169 if

(

m_Score

.empty() )

return true

;

170 if

( contents.find_first_not_of(

" \n\r\t"

) ==

NPOS

)

return true

;

This stream exchanges data with an HTTP server located at the URL: http[s]://host[:port]/path[?...

bool DoHydraSearch(const string &query, vector< int > &uids, ESearch search=ESearch::ePUBMED_TOP_20, EScoreCutoff cutoff=EScoreCutoff::eCutoff_Low)

bool warning(const string &message)

bool start_element(const string &name, const attrs_type &attrs)

bool end_element(const string &name)

CHydraServer(vector< int > &uids)

bool text(const string &contents)

CHydraSearch::EScoreCutoff m_Cutoff

bool RunHydraSearch(const string &query, CHydraSearch::ESearch search, CHydraSearch::EScoreCutoff cutoff)

bool error(const string &message)

The xml::error_messages class is used to store all the error message which are collected while parsin...

bool has_fatal_errors(void) const

Check if there are fatal errors in the error messages.

bool has_errors(void) const

Check if there are errors in the error messages.

std::string print(void) const

Convert error messages into a single printable string.

The xml::event_parser is used to parse an XML document by calling member functions when certain thing...

std::map< std::string, std::string > attrs_type

a type for holding XML node attributes

bool parse_stream(std::istream &stream, error_messages *messages, warnings_as_errors_type how=type_warnings_not_errors)

Parse what ever data that can be read from the given stream.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

void Warning(CExceptionArgs_Base &args)

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static double StringToDouble(const CTempStringEx str, TStringToNumFlags flags=0)

Convert string to double.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string URLEncode(const CTempString str, EUrlEncode flag=eUrlEnc_SkipMarkChars)

URL-encode string.

static string GetSearchType(CHydraSearch::ESearch search)

API (CHydraSearch) for citation lookup.

void SleepSec(unsigned long sec, EInterruptOnSignal onsignal=eRestartOnSignal)

Sleep.

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