A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/hitmatrix__unit__test_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/app/blastfmt/unit_test/hitmatrix_unit_test.cpp Source File

Go to the documentation of this file.

Go to the SVN repository for this file.

45 #include "../blast_hitmatrix.hpp" 49 #ifndef SKIP_DOXYGEN_PROCESSING 59  string

seqAlignFileName_in =

"data/in_HitMatrixSeqalign.txt"

;

63

ifstream

in

(seqAlignFileName_in.c_str());

68

unique_ptr<CBlastHitMatrix> blastHitMatrix

72

blastHitMatrix->SetFileName(tmpfile.

GetFileName

());

73

blastHitMatrix->WriteToFile();

76

BOOST_REQUIRE_EQUAL(

true

, outFile.

Exists

() && outFile.

GetLength

() > 8000);

81  string

seqAlignFileName_in =

"data/in_HitMatrixSeqalignFSTA.txt"

;

85

ifstream

in

(seqAlignFileName_in.c_str());

90

unique_ptr<CBlastHitMatrix> blastHitMatrix

94

blastHitMatrix->SetFileName(tmpfile.

GetFileName

());

95

blastHitMatrix->WriteToFile();

98

BOOST_REQUIRE_EQUAL(

true

, outFile.

Exists

() && outFile.

GetLength

() > 8000);

BOOST_AUTO_TEST_SUITE_END() static int s_GetSegmentFlags(const CBioseq &bioseq)

This class displays the image of the hitmatrix view for blast 2 seq results.

Int8 GetLength(void) const

Get size of file.

const string & GetFileName(void) const

Return used file name (generated or given in the constructor).

virtual bool Exists(void) const

Check existence of file.

#define MSerial_AsnText

I/O stream manipulators –.

const Tdata & Get(void) const

Get the member data.

BOOST_AUTO_TEST_CASE(TestHitMatrixWriteToFileAcc)

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

The NCBI C++/STL use hints.

std::istream & in(std::istream &in_, double &x_)

BOOST_AUTO_TEST_SUITE(psiblast_iteration)

Utility stuff for more convenient using of Boost.Test library.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4