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NCBI C++ ToolKit: src/gui/widgets/hit_matrix/hit_matrix_renderer.cpp Source File

: m_ShowRulers(

),

m_BottomRuler(

),

m_RightRuler(

),

m_BackColor(1.0f, 1.0f, 1.0f),

m_HitColoringParams(

)

glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT);

s_label, q_label;

s_label += sequence::CDeflineGenerator().GenerateDefline(s_handle);

q_label += sequence::CDeflineGenerator().GenerateDefline(q_handle);

(

= 0;

<

;

++ ) {

b_first =

;

left, right, top, bottom;

s_to = s_from + s_len;

q_to = q_from + q_len;

left = s_from; right = s_to;

bottom = q_from; top = q_to;

left =

(left, s_from);

right =

(right, s_to);

bottom =

(bottom, q_from);

top =

(top, q_to);

vector<string>

;

.push_back(*it);

(it->m_Type == name) {

it->m_Color =

;

(

= 0;

<

;

++ ) {

std::reverse(graphs.begin(), graphs.end());

(

= 0;

<

;

++ ) {

(

= (

) graphs.size() - 1;

>= 0;

-- ) {

& name = graphs[

];

TMap::iterator it = name_to_graph.find(name);

(it != name_to_graph.end()) {

name_to_graph.erase(it);

&

= iter->m_Type;

(it->m_Type == name) {

sz_left_ruler, sz_bottom_ruler;

max_num_y = (

) ceil(rc_m.

());

max_num_x = (

) ceil(rc_m.

());

mx_left = query_cont_size.

()+ sz_left_ruler.

();

mx_bottom = subj_cont_size.

() + sz_bottom_ruler.

() + 2;

static void GetGraphTypes(vector< string > &types)

CGraphContainer CGraphContainer a composite IRenderable that manages several child IRenderable graphs...

virtual void RemoveAllGraphs()

virtual void SetVPRect(const TVPRect &rect)

virtual string GetTooltip()

virtual bool NeedTooltip(CGlPane &pane, int vp_x, int vp_y)

virtual void SetModelRect(const TModelRect &rc)

virtual size_t GetGraphsCount() const

virtual void Render(CGlPane &pane)

virtual bool AddGraph(TGraph *graph, bool front=false)

virtual TGraph * GetGraph(size_t index)

virtual TVPPoint PreferredSize()

void SetProperties(const SProperties &props)

virtual IHistogramGraphDS * GetDataSource()

virtual void SetDataSource(IHistogramGraphDS *ds)

const SProperties & GetProperties() const

const TElemGlyphSet & GetSelectedGlyphs() const

void AssignColorsByScore(const SHitColoringParams *params)

void Render(CGlPane &pane)

virtual void DeleteGlyphs()

virtual void CreateGlyph(const IHit &hit_elem)

void SetGraphColor(const string &name, const CRgbaColor &color)

void x_RenderContainers(const CGlPane &port)

void GetGraphTypes(vector< SGraphDescr > &types) const

TVPRect m_rcBottomContainer

virtual void ShowRulers(bool show)

CGraphContainer m_LeftContainer

const SHitColoringParams * m_HitColoringParams

CRegularGridRenderer m_Grid

virtual bool NeedTooltip(int area, int vp_x, int vp_y)

void x_SetGraphs(ESequence seq, const vector< string > &graphs)

IHitMatrixDataSource * m_DataSource

CGlPane & GetSubjectPane()

void x_SetRulerText(IHitMatrixDataSource *ds)

virtual int GetAreaByVPPos(TVPUnit vp_x, TVPUnit vp_y)

CGlPane & GetMatrixPane()

void SetGraphs(ESequence seq, const vector< string > &graphs)

CGraphContainer m_BottomContainer

virtual void ShowGrid(bool show)

void Layout(const CGlPane &pane)

recalculates recatngles for all intrnal objects so that they are positioned correctly with regard to ...

void x_UpdateGraphColor(IRenderable *graph)

TVPRect m_rcLeftContainer

CHistogramGraph * x_CreateHistogram(ESequence seq, const SGraphDescr &descr)

ESequence

identifies one of the two sequences in the pane

void GetGraphs(ESequence seq, vector< string > &graphs) const

virtual ~CHitMatrixRenderer()

vector< SGraphDescr > TGraphTypes

CRef< CGlTextureFont > m_SeqFont

virtual void Update(IHitMatrixDataSource *ds, const CGlPane &port)

TVPRect GetRect(EArea area)

CRef< CHitMatrixSeqGraph > m_QueryGraph

void x_DestroyGraphs(CGraphContainer &cont)

virtual void Render(const CGlPane &port, bool pdf=false)

CRef< CHitMatrixSeqGraph > m_SubjectGraph

void x_RenderAxisAndGrid(const CGlPane &port, CGlPane &gr_pane)

TModelRect GetSelectedHitElemsRect() const

virtual void SetBackgroundColor(CRgbaColor &color)

void ColorByScore(const SHitColoringParams *params)

virtual string GetTooltip(int area)

const string & GetScoreName() const

virtual void Resize(int w, int h, const CGlPane &port)

void x_AdjsutToMasterPane(const CGlPane &port, CGlPane &pane, bool b_model_x, bool b_model_y)

adjusts limits and visible rect of the given pane to the master pane

void SetBioseqHandle(objects::CBioseq_Handle &handle)

void SetFonts(CGlTextureFont *seq_font)

class CRgbaColor provides a simple abstraction for managing colors.

void SetColor(EColorType type, const CRgbaColor &color)

void SetTextLabel(const string &label)

TVPPoint GetPreferredSize(int max_num=0) const

void SetHorizontal(bool b_horz, ELabelPlacement place=eDefault, ELabelAlign aln=eAln_Center)

void SetLabelOrientation(CGlTextureFont::EFontRotateFlags rotate, int rotate_degrees)

void SetDisplayOptions(int options)

virtual void Render(CGlPane &pane)

virtual string GetLabel() const =0

virtual TSeqPos GetQueryLength() const =0

virtual TSignedSeqPos GetQueryStart() const =0

virtual TSeqPos GetSubjectLength() const =0

virtual TSignedSeqPos GetSubjectStart() const =0

IHitMatrixDataSource - abstract Data Source for Hit Matrix Widget.

virtual const THitAdapterCont & GetHits() const =0

virtual IHitSeqId & GetSubjectId() const =0

virtual IHitSeqId & GetQueryId() const =0

vector< IHit * > THitAdapterCont

virtual objects::CBioseq_Handle GetQueryHandle()=0

virtual string GetLabel(const IHitSeqId &id)=0

virtual objects::CBioseq_Handle GetSubjectHandle()=0

IRenderable class IRenderable defines an abstract interface required for rendering graphical panels i...

static const struct type types[]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

void Render(CGlPane *pAreaPane, CGlPane *pPane, CRegularGridGen *pGenerator) const

void EnableOneBased(bool en_x, bool en_y)

plus/minus one base to align grid to ruler bars.

void SetIntegerMode(bool IntegerX, bool IntegerY)

CRegularGridGen inline methods.

void EnableIntegerCentering(bool b_en)

void SetModelLimitsRect(const TModelRect &R)

void SetViewport(const TVPRect &R)

CGlPoint< TVPUnit > TVPPoint

CGlRect & CombineWith(const CGlRect &r)

TVPRect & GetViewport(void)

CGlRect< TVPUnit > TVPRect

TModelRect & GetModelLimitsRect(void)

bool PtInRect(T x, T y) const

void SetVert(T bottom, T top)

void SetVisibleRect(const TModelRect &R)

TModelRect & GetVisibleRect(void)

CGlRect< TModelUnit > TModelRect

void SetHorz(T left, T right)

void EnableOffset(bool b_en=true)

Offset is used as a workaround for OpenGL precision problems emerging when size of visible range is s...

@ fFontRotateBase

Rotate around lower-left corner of unrotated text box.

float GetBlue(void) const

float GetGreen(void) const

float GetAlpha(void) const

float GetRed(void) const

Get specific channels in floating point values.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

unsigned int

A callback function used to compare two keys in a database.

static const size_t kMaxRulerLabel

static const char * kSeqGraph

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

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