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NCBI C++ ToolKit: src/gui/widgets/hit_matrix/hit_matrix_ds_builder.cpp Source File

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ds->SetParams(params,

);

@ eBothDirections

No filtering: use both direct and reverse sequences.

CIRef< IHitMatrixDataSource > CreateDataSource()

vector< CConstRef< objects::CSeq_align > > TAlignVector

virtual ~CHitMatrixDSBuilder()

void Init(objects::CScope &scope, const objects::CSeq_align &align)

initial data set from which an alignment will be build

CRef< objects::CScope > m_Scope

TAlignVector m_OrigAligns

CIRef< IHitMatrixDataSource > x_CreateDataSource()

vector< CConstRef< objects::CSeq_annot > > TAnnotVector

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsAlign(void) const

Check if variant Align is selected.

const TData & GetData(void) const

Get the Data member data.

USING_SCOPE(ncbi::objects)

Defines: CTimeFormat - storage class for time format.

void ExtractSeqAligns(const T &obj, vector< CConstRef< objects::CSeq_align > > &aligns)

This is the place where elements of the new Alignment Library will be collected.

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