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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/histogram_glyph.hpp Source File

accum_functor* func =

,

def = 0);

m_InterpolationMethod = interpolation_method;

m_InterpolationMethod;

(left) >

(right) ? left : right;

& title =

);

OnLeftDblClick(

&

);

GetHTMLActiveAreas(

* p_areas)

;

IsClickable()

;

IsCoverageGraph()

;

& GetDensityMaps(

)

;

GetMapNum()

;

objects::CSeqFeatData::E_Choice GetFeatType()

;

SetAnnotName(

& name);

& GetAnnotName()

;

SetSubtype(objects::CSeqFeatData::ESubtype subtype);

SetDesc(

& desc);

& GetDesc()

;

SetFixedScale(

);

SetShowTitle(

);

DrawGrid(

include_background)

;

RunSettingsDialog();

GetLegend(objects::CTrackConfig::TLegend& legend)

;

isRmtBased()

;

x_Draw()

;

x_UpdateBoundingBox();

x_HighestValueBelowMax(

& densityMap)

;

x_LowesetValueBelowMin(

& densityMap)

;

x_DrawLogRuler(

)

;

x_DrawLinearRuler(

)

;

x_DrawGraph(TMaps::const_iterator& map_iter)

;

x_DrawDataPoints(

& densityMap)

;

x_DrawHeatMap(TMaps::const_iterator& map_iter,

&

)

;

x_DrawGraphMap(TMaps::const_iterator& map_iter,

&

)

;

x_DrawSmoothCurve(vector<TModelPoint>& points)

;

x_UpdateLegend();

x_HasLegend()

;

x_GetLabel(

&

)

;

m_NumBins = 0;

m_BinSize = 0;

max_val = DBL_MIN;

max_val =

(max_val, (

)map_iter->second.GetMax());

min_val = DBL_MAX;

min_val =

(min_val, (

)map_iter->second.GetMin());

(

!= objects::CSeqFeatData::eSubtype_any &&

!= objects::CSeqFeatData::eSubtype_bad) {

User-defined methods of the data storage class.

class CDensityMap generates a low-resolution view of a set of features.

CRef< CHistParams > GetHistParams(TFeatSubtype subtype) const

Get histogram settings using feature subtype.

TModelPoint GetFirstPoint() const

TModelPoint GetLastPoint() const

void SetInterpolationMethod(EInterpolationMethod interpolation_method)

EInterpolationMethod m_InterpolationMethod

@ eInterpolation_Piecewise

EInterpolationMethod GetInterpolationMethod() const

const TDataPoints & GetDataPoints() const

TModelPoint GetDataPoint(size_t idx) const

const string & GetAnnotName() const

void SetAxisMin(TDataType min)

CConstRef< CSeqGraphicConfig > m_gConfig

TDataType GetAxisMin() const

CHistogramGlyph(const TMaps &maps, objects::CSeqFeatData::ESubtype subtype)

void SetDialogHost(IGlyphDialogHost *host)

const TMap & GetDensityMap(void) const

Access the first density map.

void SetShowTitle(bool f)

const string & GetDesc() const

void SetAxisMaxFixed(TDataType max)

void SetAxisMax(TDataType max)

string m_AnnotName

Key for accessing histogram settings.

void SetFixedScale(bool value)

const string & GetTitle() const

const int GetMapNum() const

Access the number of maps.

TDataType GetAxisMax() const

Get the axis limits (max/min).

map< string, TMap > TMaps

void SetSubtype(objects::CSeqFeatData::ESubtype subtype)

struct { TSeqRange range SOutlier

IGlyphDialogHost * m_DlgHost

TDataType GetMax() const

Get the actually density max/min values.

void SetRenderingMode(ERenderingMode mode)

CRef< CLayoutGroup > m_Legend

virtual TSeqRange GetRange(void) const

get the total range of this object.

objects::CSeqFeatData::ESubtype GetFeatSubtype() const

void SetDesc(const string &desc)

CHistogramGlyph(const TMap &map, objects::CSeqFeatData::ESubtype subtype, const string &title="")

vector< SOutlier > m_Outliers

const TMaps & GetDensityMaps(void) const

Access all the maps.

CRef< CHistParams > GetHistParams() const

objects::CSeqFeatData::ESubtype m_Subtype

void SetAxisMinFixed(TDataType min)

CLayoutGroup is a container of CSeqGlyphs (layout objects).

class CRgbaColor provides a simple abstraction for managing colors.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

vector< CHTMLActiveArea > TAreaVector

CRef< CHistParamsManager > GetHistParamsManager() const

Get histogram config manager.

IGlyphDialogHost An interface used for handling issues related to any dialog pops up that requires so...

container_type::const_iterator const_iterator

const_iterator begin() const

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

objects::CSeqFeatData::ESubtype GetFeatSubtype(const string &feat_type)

static bool isRmtAnnotName(const string &sAnnotname)

check if a given annotation was created by a remote file pipeline

vector< size_t > TDataPoints

static TSeqPos GetDensityMap(const objects::CBioseq_Handle &handle, TSeqPos start, TSeqPos stop, TSeqPos window, objects::SAnnotSelector sel, vector< TSeqPos > &density)

OLD static method.

CDensityMap< CntType > & operator=(const CDensityMap< CntType > &map)

TSeqRange GetRange() const

NCBI_XOBJUTIL_EXPORT string GetTitle(const CBioseq_Handle &hnd, TGetTitleFlags flags=0)

bool IsNull(void) const THROWS_NONE

Check if pointer is null – same effect as Empty().

TThisType & CombineWith(const TThisType &r)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

static const char label[]

const GenericPointer< typename T::ValueType > T2 value

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

virtual binary_functor< TDataType > * clone() const

virtual TDataType operator()(const TDataType &left, const TDataType &right) const

TEMPLATE binary functor base struct.

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