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NCBI C++ ToolKit: src/gui/packages/pkg_snp/hapmap/hapmap_ds.cpp Source File

->listObjs.swap(glyphs);

}

(std::exception& ex) {

fetchTable =

;

.SetOverlapTotalRange().SetResolveAll().SetAdaptiveDepth(

);

(

= 0;

< rows; ++

) {

( col_pos.

(annot,

, pos) &&

objs->push_back(fref);

&

=

&

(

.object.GetObject());

(iter->IsNamed()) {

&

=

&

(

.object.GetObject());

(

.scope.GetObject(),

);

sid(

);

slabel(

);

User-defined methods of the data storage class.

const TAnnotNames & GetAnnotNames(void) const

CAppJobError Default implementation for IAppJobError - encapsulates a text error message.

EJobState x_Load(CSeqGlyph::TObjects *)

virtual EJobState x_Execute()

method truly doing the job.

CHapmapJob(const CBioseq_Handle &handle, const TSeqRange &range, const SParams &params)

void SetAnnotName(const string &name)

objects::SAnnotSelector m_Sel

our annotation selector

TSeqRange m_Range

target range

objects::CBioseq_Handle m_Handle

target sequence

TJobID x_LaunchJob(IAppJob &job, int report_period=1, const string &pool="ObjManagerEngine")

Launch either a background or foreground job.

bool m_Adaptive

adaptive/exact annot selector

int m_Depth

annotation resolving depth

objects::CBioseq_Handle m_Handle

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual bool IsSharable() const

check if the data source can be shared.

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual ISGDataSource * CreateDS(SConstScopedObject &object) const

CSGHapmapDSType.

void LoadData(const TSeqRange &range, TModelUnit scale, bool preferFeats, bool isOverview)

void SetName(const string &)

static void GetTrackNames(SConstScopedObject &object, TAnnotNameTitleMap &names, const TSeqRange &range, const ILayoutTrackFactory::SExtraParams &params)

CSGHapmapDS(objects::CScope &scope, const objects::CSeq_id &id)

CSGHapmapDS.

list< CRef< CSeqGlyph > > TObjects

CRef< CAppJobError > m_Error

bool TryGet(const CFeat_CI &feat_ci, Value &v) const

container_type::value_type value_type

static const struct name_t names[]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

static bool IsNAA(const string &annot, bool isStrict=false)

check if a given annotation is a named annotation accession[.version][number] when isSctrict == false...

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

static void SetResolveDepth(objects::SAnnotSelector &sel, bool adaptive, int depth=-1)

help function for setting selector resolve depth.

static const int c_BinWidth

standard width and height of a bin

EJobState

Job states (describe FSM)

size_t GetSeq_tableNumRows(void) const

SAnnotSelector & SetCollectNames(bool value=true)

Collect available annot names rather than annots.

SAnnotSelector & SetAnnotType(TAnnotType type)

Set annotation type (feat, align, graph)

void Reset(void)

Reset reference object.

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

const GenericPointer< typename T::ValueType > T2 value

#define row(bind, expected)

bool bPreferFeat

Only return feat glyphs when not overview.

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