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NCBI C++ ToolKit: src/objmgr/handle_range.cpp Source File

: m_TotalRanges_plus(

::GetEmpty()),

m_TotalRanges_minus(

::GetEmpty()),

m_IsCircular(

),

m_IsSingleStrand(

),

m_MoreBefore(

),

: m_TotalRanges_plus(

::GetEmpty()),

m_TotalRanges_minus(

::GetEmpty()),

m_IsCircular(

),

m_IsSingleStrand(

),

m_MoreBefore(

),

( it->first.IntersectingWith(filter) ) {

(it->first & filter, it->second);

(range, strand,

,

);

more_before,

more_after,

circular_rna)

( strand !=

.front().second ) {

( !it->first.Empty() ) {

range.

() < it->first.GetFrom();

range.

() > it->first.GetFrom();

( it1->first.IntersectingWith(it2->first) ) {

( it1->first.IntersectingWith(it2->first) ) {

( !it->first.Empty() &&

(it->first.IntersectingWith(range) ||

it->first.GetFrom() == range.

() ||

it->first.GetToOpen() == range.

()) ) {

(

& circular_strand) {

( include_origin ) {

( include_origin ) {

( !range.

() ) {

( !range.

() ) {

bool IsReverse(ENa_strand s)

TTotalRangeFlags GetStrandsFlag(void) const

TSeqPos GetRight(void) const

bool x_IncludesMinus(const ENa_strand &strand) const

bool IsCircular(void) const

TSeqPos GetLeft(void) const

bool IntersectingWithSubranges(const CHandleRange &hr) const

void AddRange(TRange range, ENa_strand strand)

bool IntersectingWith(const CHandleRange &hr) const

TRange GetCircularRangeStart(bool include_origin=true) const

static bool x_IntersectingStrands(ENa_strand str1, ENa_strand str2)

TRange m_TotalRanges_minus

bool x_IncludesPlus(const ENa_strand &strand) const

void AddRanges(const CHandleRange &hr)

TRange m_TotalRanges_plus

bool IntersectingWithTotalRange(const CHandleRange &hr) const

vector< TRangeWithStrand > TRanges

bool IntersectingWith_NoStrand(const CHandleRange &hr) const

TRange GetCircularRangeEnd(bool include_origin=true) const

TRange GetOverlappingRange(TTotalRangeFlags flags=eStrandAny) const

unsigned int TTotalRangeFlags

void MergeRange(TRange range, ENa_strand strand)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_REVERSE_ITERATE(Type, Var, Cont)

Non constant version of REVERSE_ITERATE macro.

bool IntersectingWith(const TThisType &r) const

TThisType IntersectionWith(const TThisType &r) const

position_type GetToOpen(void) const

static TThisType GetEmpty(void)

static position_type GetWholeFrom(void)

static TThisType GetWhole(void)

static position_type GetWholeTo(void)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

void SetTo(TTo value)

Assign a value to To data member.

ENa_strand

strand of nucleic acid

double value_type

The numeric datatype used by the parser.

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