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NCBI C++ ToolKit: src/objtools/writers/gvf_write_data.cpp Source File

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User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void GetLabel(string *label) const

bool SetAttribute(const string &, const string &)

TAttributes::iterator TAttrIt

TAttributes::const_iterator TAttrCit

virtual bool x_AssignAttributeName(const CMappedFeat &)

virtual bool x_AssignAttributesCustom(const CMappedFeat &)

virtual bool x_AssignAttributeEndRange(const CMappedFeat &)

virtual ~CGvfWriteRecord()

virtual bool x_AssignAttributeVarType(const CMappedFeat &)

string StrAttributes() const override

virtual bool x_AssignAttributeID(const CMappedFeat &)

virtual bool AssignSource(const CMappedFeat &)

virtual bool x_AssignAttributeStartRange(const CMappedFeat &)

CGvfWriteRecord(CGffFeatureContext &)

void x_AppendAttribute(TAttrCit, string &) const

virtual bool AssignAttributes(const CMappedFeat &, unsigned int=0)

virtual bool AssignType(const CMappedFeat &, unsigned int=0)

virtual bool x_AssignAttributeParent(const CMappedFeat &)

ESubtype GetSubtype(void) const

bool HasField(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const

Verify that a named field exists.

const CUser_field & GetField(const string &str, const string &delim=".", NStr::ECase use_case=NStr::eCase) const

Access a named field in this user object.

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

const CSeqFeatData & GetData(void) const

const CUser_object & GetExt(void) const

bool IsSetExt(void) const

const CSeq_loc & GetLocation(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

const TStr & GetStr(void) const

Get the variant data.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetType(void) const

type of object within class Check if a value has been assigned to Type data member.

const TData & GetData(void) const

Get the Data member data.

TLim GetLim(void) const

Get the variant data.

TMin GetMin(void) const

Get the Min member data.

const TStr & GetStr(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

E_Choice Which(void) const

Which variant is currently selected.

const TType & GetType(void) const

Get the Type member data.

TMax GetMax(void) const

Get the Max member data.

vector< CRef< CUser_field > > TData

const TRange & GetRange(void) const

Get the variant data.

const TVariation & GetVariation(void) const

Get the variant data.

const TFuzz_from & GetFuzz_from(void) const

Get the Fuzz_from member data.

const TFuzz_to & GetFuzz_to(void) const

Get the Fuzz_to member data.

TFrom GetFrom(void) const

Get the From member data.

bool IsSetFuzz_to(void) const

Check if a value has been assigned to Fuzz_to data member.

TTo GetTo(void) const

Get the To member data.

bool IsInt(void) const

Check if variant Int is selected.

const TInt & GetInt(void) const

Get the variant data.

bool IsSetFuzz_from(void) const

Check if a value has been assigned to Fuzz_from data member.

TType GetType(void) const

Get the Type member data.

const TInstance & GetInstance(void) const

Get the variant data.

const TId & GetId(void) const

Get the Id member data.

bool IsSetConsequence(void) const

Check if a value has been assigned to Consequence data member.

const TData & GetData(void) const

Get the Data member data.

bool IsInstance(void) const

Check if variant Instance is selected.

list< CRef< C_E_Consequence > > TConsequence

const TConsequence & GetConsequence(void) const

Get the Consequence member data.

bool IsSetParent_id(void) const

Check if a value has been assigned to Parent_id data member.

const TParent_id & GetParent_id(void) const

Get the Parent_id member data.

const TName & GetName(void) const

Get the Name member data.

bool IsSetId(void) const

ids (i.e., SNP rsid / ssid, dbVar nsv/nssv) expected values include 'dbSNP|rs12334',...

bool IsSetName(void) const

names and synonyms some variants have well-known canonical names and possible accepted synonyms Check...

@ eType_snv

delta=[morph of length 1] NOTE: this is snV not snP; the latter requires frequency-based validation t...

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

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