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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gui__seq__info__seq__id_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/objutils/gui_seq_info_seq_id.cpp Source File

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49  virtual bool IsDNA

()

const

;

52  virtual bool IsRNA

()

const

{

return false

; }

53  virtual bool IscDNA

()

const

{

return false

; }

64

CSeq_id::GetTypeInfo(),

68

CSeq_loc::GetTypeInfo(),

75  const CObject

* obj_ptr =

object

.object.GetPointer();

78

obj_ptr = seq_loc_ptr->

GetId

();

85

gui_info->

m_Scope

=

object

.scope;

98  if

(seq_id_ptr->

IsGi

())

107  if

(seq_id_ptr->

IsGi

())

114  if

(

gen

.GetDb() ==

"TRACE_ASSM"

) {

virtual bool IsDNA() const

CConstRef< CObject > m_Object

virtual bool IsGenomic() const

virtual bool IscDNA() const

virtual bool IsProtein() const

static CGuiSeqInfoSeq_id * CreateObject(SConstScopedObject &object, ICreateParams *params)

virtual bool IsRNA() const

CRef< objects::CScope > m_Scope

virtual bool IsSequence() const

static void RegisterFactory(const string &interface_name, IInterfaceFactory *factory)

static EAccessionInfo IdentifyAccession(const CTempString &accession, TParseFlags flags=fParse_AnyRaw)

Deduces information from a bare accession a la WHICH_db_accession; may report false negatives on prop...

EAccessionInfo

For IdentifyAccession (below)

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TGeneral & GetGeneral(void) const

Get the variant data.

bool IsGi(void) const

Check if variant Gi is selected.

void initCGuiSeqInfoSeq_id()

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