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NCBI C++ ToolKit: include/objtools/writers/gtf_write_data.hpp Source File

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bNoExonNumbers =

) :

exonNumber)

partNumber)

bool SetAttribute(const string &, const string &)

feature::CFeatTree & FeatTree()

CGffFeatureContext & m_fc

void SetPartNumber(unsigned int partNumber)

static string x_AttributeToString(const string &, const string &)

unsigned int GetExtent() const

void SetCdsPhase(const list< CRef< CSeq_interval >> &intervals, ENa_strand strand, int startingPhase=0)

void SetGeneId(const std::string &geneId)

string TranscriptId() const

void SetTranscriptId(const std::string &transcriptId)

string StrStructibutes() const

CGtfRecord(CGffFeatureContext &fc, bool bNoExonNumbers=false)

void SetCdsPhase_Force(int phase)

void SetCdsPhase(int phase)

string StrAttributes() const

bool MakeChildRecord(const CGtfRecord &, const CSeq_interval &, unsigned int=0)

void SetExonNumber(unsigned int exonNumber)

feature::CFeatTree & FeatTree()

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

ENa_strand

strand of nucleic acid

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