A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gtf__write__data_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/writers/gtf_write_data.cpp Source File

69  auto

pos = transcriptId.find_last_of(

'|'

);

70  if

(pos != string::npos) {

71  return

transcriptId.substr(pos+1);

90  unsigned int

uExonNumber )

108  if

( 0 != uExonNumber ) {

118  string

strAttributes;

119

strAttributes.reserve(256);

127  for

( it = attrs.

begin

(); it != attrs.

end

(); ++it ) {

128  string

strKey = it->first;

132  if

( strKey ==

"exon_number"

) {

135  if

(strKey ==

"db_xref"

) {

136  for

(

const auto

& xref: it->second) {

141  for

(

const auto

&

value

: it->second) {

147

it = attrs.

find

(

"exon_number"

);

148  if

( it != attrs.

end

() ) {

152  return

strAttributes;

159  string

strAttributes;

160

strAttributes.reserve(256);

170

it = attrs.

find

(

"exon_number"

);

171  if

( it != attrs.

end

() ) {

174  return

strAttributes;

184  if

( cdsLocs.empty() ) {

189  unsigned int

uTopSize = 0;

190  for

(

auto

it = cdsLocs.begin(); it != cdsLocs.end(); ++it ) {

191  if

( (*it)->IsSetFrom() && (*it)->GetFrom() >

mSeqStop

) {

192

uTopSize += (*it)->GetLength();

195  mPhase

= ((3 - ((uTopSize+3 - startingPhase) % 3) ) % 3);

198  unsigned int

uBottomSize = 0;

199  for

(

auto

it = cdsLocs.begin() ; it != cdsLocs.end(); ++it ) {

200  if

( (*it)->IsSetTo() && (*it)->GetTo() <

mSeqStart

) {

201

uBottomSize += (*it)->GetLength();

204  mPhase

= ((3 - ((uBottomSize+3 - startingPhase) % 3) ) % 3);

210  const string

& strKey,

211  const string

& strValue )

214  string str

( strKey );

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

virtual string StrType() const

const TAttributes & Attributes() const

void SetLocation(unsigned int, unsigned int, ENa_strand=objects::eNa_strand_unknown)

bool SetAttribute(const string &, const string &)

TAttributes::iterator TAttrIt

static string x_AttributeToString(const string &, const string &)

void SetCdsPhase(const list< CRef< CSeq_interval >> &intervals, ENa_strand strand, int startingPhase=0)

string TranscriptId() const

void SetTranscriptId(const std::string &transcriptId)

string StrStructibutes() const

string StrAttributes() const

bool MakeChildRecord(const CGtfRecord &, const CSeq_interval &, unsigned int=0)

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * str(char *buf, int n)

static const char location[]

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string UIntToString(unsigned int value, TNumToStringFlags flags=0, int base=10)

Convert UInt to string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

ENa_strand

strand of nucleic acid

static string s_ProcessTranscriptId(const string &transcriptId)

const GenericPointer< typename T::ValueType > T2 value

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4