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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/groupdataspecOMSSA.html below:

Code generated by DATATOOL from 'omssa.asn' (module 'OMSSA')

typedef CMSBioseq_Base CMSBioseq::Tparent typedef CSerialObject CMSBioseq_Base::Tparent typedef int CMSBioseq_Base::TOid typedef CBioseq CMSBioseq_Base::TSeq typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSBioseq_Base::TmemberIndex typedef CSerialObject CMSBioseqSet_Base::Tparent typedef list< CRef< CMSBioseq > > CMSBioseqSet_Base::Tdata typedef CMSChargeHandle_Base CMSChargeHandle::Tparent typedef CSerialObject CMSChargeHandle_Base::Tparent typedef int CMSChargeHandle_Base::TCalcplusone typedef int CMSChargeHandle_Base::TCalccharge typedef int CMSChargeHandle_Base::TMincharge typedef int CMSChargeHandle_Base::TMaxcharge typedef int CMSChargeHandle_Base::TConsidermult typedef double CMSChargeHandle_Base::TPlusone typedef int CMSChargeHandle_Base::TMaxproductcharge typedef bool CMSChargeHandle_Base::TProdlesspre typedef int CMSChargeHandle_Base::TNegative typedef Tparent::CMemberIndex< E_memberIndex, 10 > CMSChargeHandle_Base::TmemberIndex typedef CSerialObject CMSHits_Base::Tparent typedef double CMSHits_Base::TEvalue typedef double CMSHits_Base::TPvalue typedef int CMSHits_Base::TCharge typedef list< CRef< CMSPepHit > > CMSHits_Base::TPephits typedef list< CRef< CMSMZHit > > CMSHits_Base::TMzhits typedef string CMSHits_Base::TPepstring typedef int CMSHits_Base::TMass typedef list< CRef< CMSModHit > > CMSHits_Base::TMods typedef string CMSHits_Base::TPepstart typedef string CMSHits_Base::TPepstop typedef int CMSHits_Base::TProtlength typedef int CMSHits_Base::TTheomass typedef int CMSHits_Base::TOid typedef list< CRef< CMSScoreSet > > CMSHits_Base::TScores typedef string CMSHits_Base::TLibaccession typedef Tparent::CMemberIndex< E_memberIndex, 16 > CMSHits_Base::TmemberIndex typedef CMSHitSet_Base CMSHitSet::Tparent typedef CSerialObject CMSHitSet_Base::Tparent typedef int CMSHitSet_Base::TNumber typedef int CMSHitSet_Base::TError typedef vector< CRef< CMSHits > > CMSHitSet_Base::THits typedef list< string > CMSHitSet_Base::TIds typedef list< CRef< CNameValue > > CMSHitSet_Base::TNamevalue typedef int CMSHitSet_Base::TSettingid typedef int CMSHitSet_Base::TUserannotation typedef Tparent::CMemberIndex< E_memberIndex, 8 > CMSHitSet_Base::TmemberIndex typedef CMSImmonium_Base CMSImmonium::Tparent typedef CSerialObject CMSImmonium_Base::Tparent typedef string CMSImmonium_Base::TParent typedef string CMSImmonium_Base::TProduct typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSImmonium_Base::TmemberIndex typedef CMSInFile_Base CMSInFile::Tparent typedef CSerialObject CMSInFile_Base::Tparent typedef string CMSInFile_Base::TInfile typedef int CMSInFile_Base::TInfiletype typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSInFile_Base::TmemberIndex typedef CMSIon_Base CMSIon::Tparent typedef CSerialObject CMSIon_Base::Tparent typedef int CMSIon_Base::TNeutralloss typedef int CMSIon_Base::TIsotope typedef string CMSIon_Base::TInternal typedef CMSImmonium CMSIon_Base::TImmonium typedef Tparent::CMemberIndex< E_memberIndex, 5 > CMSIon_Base::TmemberIndex typedef CMSIonAnnot_Base CMSIonAnnot::Tparent typedef CSerialObject CMSIonAnnot_Base::Tparent typedef bool CMSIonAnnot_Base::TSuspect typedef double CMSIonAnnot_Base::TMassdiff typedef bool CMSIonAnnot_Base::TMissingisotope typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSIonAnnot_Base::TmemberIndex typedef CMSIterativeSettings_Base CMSIterativeSettings::Tparent typedef CSerialObject CMSIterativeSettings_Base::Tparent typedef double CMSIterativeSettings_Base::TResearchthresh typedef double CMSIterativeSettings_Base::TSubsetthresh typedef double CMSIterativeSettings_Base::TReplacethresh typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSIterativeSettings_Base::TmemberIndex typedef CMSLibrarySettings_Base CMSLibrarySettings::Tparent typedef CSerialObject CMSLibrarySettings_Base::Tparent typedef list< string > CMSLibrarySettings_Base::TLibnames typedef bool CMSLibrarySettings_Base::TPresearch typedef bool CMSLibrarySettings_Base::TUseomssascore typedef bool CMSLibrarySettings_Base::TUsereplicatescore typedef bool CMSLibrarySettings_Base::TQtofscore typedef Tparent::CMemberIndex< E_memberIndex, 6 > CMSLibrarySettings_Base::TmemberIndex typedef CMSMassSet_Base CMSMassSet::Tparent typedef CSerialObject CMSMassSet_Base::Tparent typedef double CMSMassSet_Base::TMonomass typedef double CMSMassSet_Base::TAveragemass typedef double CMSMassSet_Base::TN15mass typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSMassSet_Base::TmemberIndex typedef CMSModHit_Base CMSModHit::Tparent typedef CSerialObject CMSModHit_Base::Tparent typedef int CMSModHit_Base::TSite typedef int CMSModHit_Base::TModtype typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSModHit_Base::TmemberIndex typedef CMSModSpec_Base CMSModSpec::Tparent typedef CSerialObject CMSModSpec_Base::Tparent typedef int CMSModSpec_Base::TMod typedef int CMSModSpec_Base::TType typedef string CMSModSpec_Base::TName typedef double CMSModSpec_Base::TMonomass typedef double CMSModSpec_Base::TAveragemass typedef double CMSModSpec_Base::TN15mass typedef list< string > CMSModSpec_Base::TResidues typedef CMSMassSet CMSModSpec_Base::TNeutralloss typedef int CMSModSpec_Base::TUnimod typedef string CMSModSpec_Base::TPsi_ms typedef Tparent::CMemberIndex< E_memberIndex, 11 > CMSModSpec_Base::TmemberIndex typedef CSerialObject CMSModSpecSet_Base::Tparent typedef list< CRef< CMSModSpec > > CMSModSpecSet_Base::Tdata typedef CMSMZHit_Base CMSMZHit::Tparent typedef CSerialObject CMSMZHit_Base::Tparent typedef int CMSMZHit_Base::TIon typedef int CMSMZHit_Base::TCharge typedef int CMSMZHit_Base::TNumber typedef int CMSMZHit_Base::TMz typedef int CMSMZHit_Base::TIndex typedef CMSIon CMSMZHit_Base::TMoreion typedef CMSIonAnnot CMSMZHit_Base::TAnnotation typedef Tparent::CMemberIndex< E_memberIndex, 8 > CMSMZHit_Base::TmemberIndex typedef CMSOutFile_Base CMSOutFile::Tparent typedef CSerialObject CMSOutFile_Base::Tparent typedef string CMSOutFile_Base::TOutfile typedef int CMSOutFile_Base::TOutfiletype typedef bool CMSOutFile_Base::TIncluderequest typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSOutFile_Base::TmemberIndex typedef CMSPepHit_Base CMSPepHit::Tparent typedef CSerialObject CMSPepHit_Base::Tparent typedef int CMSPepHit_Base::TStart typedef int CMSPepHit_Base::TStop typedef NCBI_NS_NCBI::TGi CMSPepHit_Base::TGi typedef string CMSPepHit_Base::TAccession typedef string CMSPepHit_Base::TDefline typedef int CMSPepHit_Base::TProtlength typedef int CMSPepHit_Base::TOid typedef bool CMSPepHit_Base::TReversed typedef string CMSPepHit_Base::TPepstart typedef string CMSPepHit_Base::TPepstop typedef Tparent::CMemberIndex< E_memberIndex, 11 > CMSPepHit_Base::TmemberIndex typedef CSerialObject CMSRequest_Base::Tparent typedef CMSSpectrumset CMSRequest_Base::TSpectra typedef CMSSearchSettings CMSRequest_Base::TSettings typedef string CMSRequest_Base::TRid typedef CMSSearchSettingsSet CMSRequest_Base::TMoresettings typedef CMSModSpecSet CMSRequest_Base::TModset typedef Tparent::CMemberIndex< E_memberIndex, 6 > CMSRequest_Base::TmemberIndex typedef CSerialObject CMSResponse_Base::Tparent typedef vector< CRef< CMSHitSet > > CMSResponse_Base::THitsets typedef int CMSResponse_Base::TScale typedef string CMSResponse_Base::TRid typedef int CMSResponse_Base::TError typedef string CMSResponse_Base::TVersion typedef string CMSResponse_Base::TEmail typedef int CMSResponse_Base::TDbversion typedef CMSBioseqSet CMSResponse_Base::TBioseqs typedef Tparent::CMemberIndex< E_memberIndex, 9 > CMSResponse_Base::TmemberIndex typedef CMSScoreSet_Base CMSScoreSet::Tparent typedef CSerialObject CMSScoreSet_Base::Tparent typedef string CMSScoreSet_Base::TName typedef double CMSScoreSet_Base::TValue typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSScoreSet_Base::TmemberIndex typedef CSerialObject CMSSearch_Base::Tparent typedef list< CRef< CMSRequest > > CMSSearch_Base::TRequest typedef list< CRef< CMSResponse > > CMSSearch_Base::TResponse typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSSearch_Base::TmemberIndex typedef CSerialObject CMSSearchSettings_Base::Tparent typedef int CMSSearchSettings_Base::TPrecursorsearchtype typedef int CMSSearchSettings_Base::TProductsearchtype typedef list< int > CMSSearchSettings_Base::TIonstosearch typedef double CMSSearchSettings_Base::TPeptol typedef double CMSSearchSettings_Base::TMsmstol typedef int CMSSearchSettings_Base::TZdep typedef double CMSSearchSettings_Base::TCutoff typedef double CMSSearchSettings_Base::TCutlo typedef double CMSSearchSettings_Base::TCuthi typedef double CMSSearchSettings_Base::TCutinc typedef int CMSSearchSettings_Base::TSinglewin typedef int CMSSearchSettings_Base::TDoublewin typedef int CMSSearchSettings_Base::TSinglenum typedef int CMSSearchSettings_Base::TDoublenum typedef list< int > CMSSearchSettings_Base::TFixed typedef list< int > CMSSearchSettings_Base::TVariable typedef int CMSSearchSettings_Base::TEnzyme typedef int CMSSearchSettings_Base::TMissedcleave typedef int CMSSearchSettings_Base::THitlistlen typedef string CMSSearchSettings_Base::TDb typedef int CMSSearchSettings_Base::TTophitnum typedef int CMSSearchSettings_Base::TMinhit typedef int CMSSearchSettings_Base::TMinspectra typedef int CMSSearchSettings_Base::TScale typedef int CMSSearchSettings_Base::TMaxmods typedef list< int > CMSSearchSettings_Base::TTaxids typedef CMSChargeHandle CMSSearchSettings_Base::TChargehandling typedef CMSModSpecSet CMSSearchSettings_Base::TUsermods typedef int CMSSearchSettings_Base::TPseudocount typedef int CMSSearchSettings_Base::TSearchb1 typedef int CMSSearchSettings_Base::TSearchctermproduct typedef int CMSSearchSettings_Base::TMaxproductions typedef int CMSSearchSettings_Base::TMinnoenzyme typedef int CMSSearchSettings_Base::TMaxnoenzyme typedef double CMSSearchSettings_Base::TExactmass typedef int CMSSearchSettings_Base::TSettingid typedef CMSIterativeSettings CMSSearchSettings_Base::TIterativesettings typedef int CMSSearchSettings_Base::TPrecursorcull typedef list< CRef< CMSInFile > > CMSSearchSettings_Base::TInfiles typedef list< CRef< CMSOutFile > > CMSSearchSettings_Base::TOutfiles typedef int CMSSearchSettings_Base::TNocorrelationscore typedef double CMSSearchSettings_Base::TProbfollowingion typedef bool CMSSearchSettings_Base::TNmethionine typedef double CMSSearchSettings_Base::TAutomassadjust typedef double CMSSearchSettings_Base::TLomasscutoff typedef CMSLibrarySettings CMSSearchSettings_Base::TLibsearchsettings typedef list< int > CMSSearchSettings_Base::TNoprolineions typedef bool CMSSearchSettings_Base::TReversesearch typedef list< CRef< CNameValue > > CMSSearchSettings_Base::TOthersettings typedef int CMSSearchSettings_Base::TNumisotopes typedef bool CMSSearchSettings_Base::TPepppm typedef bool CMSSearchSettings_Base::TMsmsppm typedef int CMSSearchSettings_Base::TReportedhitcount typedef Tparent::CMemberIndex< E_memberIndex, 54 > CMSSearchSettings_Base::TmemberIndex typedef CMSSearchSettingsSet_Base CMSSearchSettingsSet::Tparent typedef CSerialObject CMSSearchSettingsSet_Base::Tparent typedef list< CRef< CMSSearchSettings > > CMSSearchSettingsSet_Base::Tdata typedef CMSSpectrum_Base CMSSpectrum::Tparent typedef CSerialObject CMSSpectrum_Base::Tparent typedef int CMSSpectrum_Base::TNumber typedef list< int > CMSSpectrum_Base::TCharge typedef int CMSSpectrum_Base::TPrecursormz typedef vector< int > CMSSpectrum_Base::TMz typedef vector< int > CMSSpectrum_Base::TAbundance typedef double CMSSpectrum_Base::TIscale typedef list< string > CMSSpectrum_Base::TIds typedef list< CRef< CNameValue > > CMSSpectrum_Base::TNamevalue typedef Tparent::CMemberIndex< E_memberIndex, 9 > CMSSpectrum_Base::TmemberIndex typedef CMSSpectrumset_Base CMSSpectrumset::Tparent typedef CSerialObject CMSSpectrumset_Base::Tparent typedef list< CRef< CMSSpectrum > > CMSSpectrumset_Base::Tdata typedef CNameValue_Base CNameValue::Tparent typedef CSerialObject CNameValue_Base::Tparent typedef string CNameValue_Base::TName typedef string CNameValue_Base::TValue typedef Tparent::CMemberIndex< E_memberIndex, 3 > CNameValue_Base::TmemberIndex enum class CMSBioseq_Base::E_memberIndex { CMSBioseq_Base::e__allMandatory = 0 , CMSBioseq_Base::e_oid , CMSBioseq_Base::e_seq } enum EMSCalcCharge { eMSCalcCharge_calculate = 0 , eMSCalcCharge_usefile = 1 , eMSCalcCharge_userange = 2 } user instructions on whether to believe charges in input file More...
enum EMSCalcPlusOne { eMSCalcPlusOne_dontcalc = 0 , eMSCalcPlusOne_calc = 1 } How is charge to be handled? Some input files are not clear on this. More...
enum class CMSChargeHandle_Base::E_memberIndex {
  CMSChargeHandle_Base::e__allMandatory = 0 , CMSChargeHandle_Base::e_calcplusone , CMSChargeHandle_Base::e_calccharge , CMSChargeHandle_Base::e_mincharge ,
  CMSChargeHandle_Base::e_maxcharge , CMSChargeHandle_Base::e_considermult , CMSChargeHandle_Base::e_plusone , CMSChargeHandle_Base::e_maxproductcharge ,
  CMSChargeHandle_Base::e_prodlesspre , CMSChargeHandle_Base::e_negative
} enum EMSEnzymes {
  eMSEnzymes_trypsin = 0 , eMSEnzymes_argc = 1 , eMSEnzymes_cnbr = 2 , eMSEnzymes_chymotrypsin = 3 ,
  eMSEnzymes_formicacid = 4 , eMSEnzymes_lysc = 5 , eMSEnzymes_lysc_p = 6 , eMSEnzymes_pepsin_a = 7 ,
  eMSEnzymes_tryp_cnbr = 8 , eMSEnzymes_tryp_chymo = 9 , eMSEnzymes_trypsin_p = 10 , eMSEnzymes_whole_protein = 11 ,
  eMSEnzymes_aspn = 12 , eMSEnzymes_gluc = 13 , eMSEnzymes_aspngluc = 14 , eMSEnzymes_top_down = 15 ,
  eMSEnzymes_semi_tryptic = 16 , eMSEnzymes_no_enzyme = 17 , eMSEnzymes_chymotrypsin_p = 18 , eMSEnzymes_aspn_de = 19 ,
  eMSEnzymes_gluc_de = 20 , eMSEnzymes_lysn = 21 , eMSEnzymes_thermolysin_p = 22 , eMSEnzymes_semi_chymotrypsin = 23 ,
  eMSEnzymes_semi_gluc = 24 , eMSEnzymes_max = 25 , eMSEnzymes_none = 255
} enumerate enzymes More...
enum EMSHitError { eMSHitError_none = 0 , eMSHitError_generalerr = 1 , eMSHitError_unable2read = 2 , eMSHitError_notenuffpeaks = 3 } error return for a particular spectrum's hitset More...
enum class CMSHits_Base::E_memberIndex {
  CMSHits_Base::e__allMandatory = 0 , CMSHits_Base::e_evalue , CMSHits_Base::e_pvalue , CMSHits_Base::e_charge ,
  CMSHits_Base::e_pephits , CMSHits_Base::e_mzhits , CMSHits_Base::e_pepstring , CMSHits_Base::e_mass ,
  CMSHits_Base::e_mods , CMSHits_Base::e_pepstart , CMSHits_Base::e_pepstop , CMSHits_Base::e_protlength ,
  CMSHits_Base::e_theomass , CMSHits_Base::e_oid , CMSHits_Base::e_scores , CMSHits_Base::e_libaccession
} enum class CMSHitSet_Base::E_memberIndex {
  CMSHitSet_Base::e__allMandatory = 0 , CMSHitSet_Base::e_number , CMSHitSet_Base::e_error , CMSHitSet_Base::e_hits ,
  CMSHitSet_Base::e_ids , CMSHitSet_Base::e_namevalue , CMSHitSet_Base::e_settingid , CMSHitSet_Base::e_userannotation
} enum class CMSImmonium_Base::E_memberIndex { CMSImmonium_Base::e__allMandatory = 0 , CMSImmonium_Base::e_parent , CMSImmonium_Base::e_product } enum class CMSInFile_Base::E_memberIndex { CMSInFile_Base::e__allMandatory = 0 , CMSInFile_Base::e_infile , CMSInFile_Base::e_infiletype } enum class CMSIon_Base::E_memberIndex {
  CMSIon_Base::e__allMandatory = 0 , CMSIon_Base::e_neutralloss , CMSIon_Base::e_isotope , CMSIon_Base::e_internal ,
  CMSIon_Base::e_immonium
} enum class CMSIonAnnot_Base::E_memberIndex { CMSIonAnnot_Base::e__allMandatory = 0 , CMSIonAnnot_Base::e_suspect , CMSIonAnnot_Base::e_massdiff , CMSIonAnnot_Base::e_missingisotope } enum EMSIonIsotopicType {
  eMSIonIsotopicType_monoisotopic = 0 , eMSIonIsotopicType_c13 = 1 , eMSIonIsotopicType_c13two = 2 , eMSIonIsotopicType_c13three = 3 ,
  eMSIonIsotopicType_c13four = 4
} iosotopic type of ion More...
enum EMSIonNeutralLoss { eMSIonNeutralLoss_water = 0 , eMSIonNeutralLoss_ammonia = 1 } types of neutral loss More...
enum EMSIonType {
  eMSIonType_a = 0 , eMSIonType_b = 1 , eMSIonType_c = 2 , eMSIonType_x = 3 ,
  eMSIonType_y = 4 , eMSIonType_z = 5 , eMSIonType_parent = 6 , eMSIonType_internal = 7 ,
  eMSIonType_immonium = 8 , eMSIonType_unknown = 9 , eMSIonType_adot = 10 , eMSIonType_x_CO2 = 11 ,
  eMSIonType_adot_CO2 = 12 , eMSIonType_max = 13
} enumeration of ion types More...
enum class CMSIterativeSettings_Base::E_memberIndex { CMSIterativeSettings_Base::e__allMandatory = 0 , CMSIterativeSettings_Base::e_researchthresh , CMSIterativeSettings_Base::e_subsetthresh , CMSIterativeSettings_Base::e_replacethresh } enum class CMSLibrarySettings_Base::E_memberIndex {
  CMSLibrarySettings_Base::e__allMandatory = 0 , CMSLibrarySettings_Base::e_libnames , CMSLibrarySettings_Base::e_presearch , CMSLibrarySettings_Base::e_useomssascore ,
  CMSLibrarySettings_Base::e_usereplicatescore , CMSLibrarySettings_Base::e_qtofscore
} enum class CMSMassSet_Base::E_memberIndex { CMSMassSet_Base::e__allMandatory = 0 , CMSMassSet_Base::e_monomass , CMSMassSet_Base::e_averagemass , CMSMassSet_Base::e_n15mass } enum EMSMod {
  eMSMod_methylk = 0 , eMSMod_oxym = 1 , eMSMod_carboxymethylc = 2 , eMSMod_carbamidomethylc = 3 ,
  eMSMod_deamidationkq = 4 , eMSMod_propionamidec = 5 , eMSMod_phosphorylations = 6 , eMSMod_phosphorylationt = 7 ,
  eMSMod_phosphorylationy = 8 , eMSMod_ntermmcleave = 9 , eMSMod_ntermacetyl = 10 , eMSMod_ntermmethyl = 11 ,
  eMSMod_ntermtrimethyl = 12 , eMSMod_methythiold = 13 , eMSMod_methylq = 14 , eMSMod_trimethylk = 15 ,
  eMSMod_methyld = 16 , eMSMod_methyle = 17 , eMSMod_ctermpepmethyl = 18 , eMSMod_trideuteromethyld = 19 ,
  eMSMod_trideuteromethyle = 20 , eMSMod_ctermpeptrideuteromethyl = 21 , eMSMod_nformylmet = 22 , eMSMod_twoamino3oxobutanoicacid = 23 ,
  eMSMod_acetylk = 24 , eMSMod_ctermamide = 25 , eMSMod_bmethylthiold = 26 , eMSMod_carbamidomethylk = 27 ,
  eMSMod_carbamidometylh = 28 , eMSMod_carbamidomethyld = 29 , eMSMod_carbamidomethyle = 30 , eMSMod_carbamylk = 31 ,
  eMSMod_ntermcarbamyl = 32 , eMSMod_citrullinationr = 33 , eMSMod_cysteicacidc = 34 , eMSMod_diiodinationy = 35 ,
  eMSMod_dimethylk = 36 , eMSMod_dimethylr = 37 , eMSMod_ntermpepdimethyl = 38 , eMSMod_dihydroxyf = 39 ,
  eMSMod_thioacetylk = 40 , eMSMod_ntermpeptioacetyl = 41 , eMSMod_farnesylationc = 42 , eMSMod_formylk = 43 ,
  eMSMod_ntermpepformyl = 44 , eMSMod_formylkynureninw = 45 , eMSMod_phef = 46 , eMSMod_gammacarboxyld = 47 ,
  eMSMod_gammacarboxyle = 48 , eMSMod_geranylgeranylc = 49 , eMSMod_ntermpepglucuronylg = 50 , eMSMod_glutathionec = 51 ,
  eMSMod_glyglyk = 52 , eMSMod_guanidinationk = 53 , eMSMod_his2asnh = 54 , eMSMod_his2asph = 55 ,
  eMSMod_ctermpephsem = 56 , eMSMod_ctermpephselactm = 57 , eMSMod_hydroxykynureninw = 58 , eMSMod_hydroxylationd = 59 ,
  eMSMod_hydroxylationk = 60 , eMSMod_hydroxylationn = 61 , eMSMod_hydroxylationp = 62 , eMSMod_hydroxylationf = 63 ,
  eMSMod_hydroxylationy = 64 , eMSMod_iodinationy = 65 , eMSMod_kynureninw = 66 , eMSMod_lipoylk = 67 ,
  eMSMod_ctermpepmeester = 68 , eMSMod_meesterd = 69 , eMSMod_meestere = 70 , eMSMod_meesters = 71 ,
  eMSMod_meestery = 72 , eMSMod_methylc = 73 , eMSMod_methylh = 74 , eMSMod_methyln = 75 ,
  eMSMod_ntermpepmethyl = 76 , eMSMod_methylr = 77 , eMSMod_ntermpepmyristoyeylationg = 78 , eMSMod_ntermpepmyristoyl4hg = 79 ,
  eMSMod_ntermpepmyristoylationg = 80 , eMSMod_myristoylationk = 81 , eMSMod_ntermformyl = 82 , eMSMod_nemc = 83 ,
  eMSMod_nipcam = 84 , eMSMod_nitrow = 85 , eMSMod_nitroy = 86 , eMSMod_ctermpepo18 = 87 ,
  eMSMod_ctermpepdio18 = 88 , eMSMod_oxyh = 89 , eMSMod_oxyw = 90 , eMSMod_ppantetheines = 91 ,
  eMSMod_palmitoylationc = 92 , eMSMod_palmitoylationk = 93 , eMSMod_palmitoylations = 94 , eMSMod_palmitoylationt = 95 ,
  eMSMod_phospholosss = 96 , eMSMod_phospholosst = 97 , eMSMod_phospholossy = 98 , eMSMod_phosphoneutrallossc = 99 ,
  eMSMod_phosphoneutrallossd = 100 , eMSMod_phosphoneutrallossh = 101 , eMSMod_propionylk = 102 , eMSMod_ntermpeppropionyl = 103 ,
  eMSMod_propionylheavyk = 104 , eMSMod_ntermpeppropionylheavy = 105 , eMSMod_pyridylk = 106 , eMSMod_ntermpeppyridyl = 107 ,
  eMSMod_ntermpeppyrocmc = 108 , eMSMod_ntermpeppyroe = 109 , eMSMod_ntermpeppyroq = 110 , eMSMod_pyroglutamicp = 111 ,
  eMSMod_spyridylethylc = 112 , eMSMod_semetm = 113 , eMSMod_sulfationy = 114 , eMSMod_suphonem = 115 ,
  eMSMod_triiodinationy = 116 , eMSMod_trimethylationr = 117 , eMSMod_ntermpeptripalmitatec = 118 , eMSMod_usermod1 = 119 ,
  eMSMod_usermod2 = 120 , eMSMod_usermod3 = 121 , eMSMod_usermod4 = 122 , eMSMod_usermod5 = 123 ,
  eMSMod_usermod6 = 124 , eMSMod_usermod7 = 125 , eMSMod_usermod8 = 126 , eMSMod_usermod9 = 127 ,
  eMSMod_usermod10 = 128 , eMSMod_icatlight = 129 , eMSMod_icatheavy = 130 , eMSMod_camthiopropanoylk = 131 ,
  eMSMod_phosphoneutrallosss = 132 , eMSMod_phosphoneutrallosst = 133 , eMSMod_phosphoetdlosss = 134 , eMSMod_phosphoetdlosst = 135 ,
  eMSMod_arg_13c6 = 136 , eMSMod_arg_13c6_15n4 = 137 , eMSMod_lys_13c6 = 138 , eMSMod_oxy18 = 139 ,
  eMSMod_beta_elim_s = 140 , eMSMod_beta_elim_t = 141 , eMSMod_usermod11 = 142 , eMSMod_usermod12 = 143 ,
  eMSMod_usermod13 = 144 , eMSMod_usermod14 = 145 , eMSMod_usermod15 = 146 , eMSMod_usermod16 = 147 ,
  eMSMod_usermod17 = 148 , eMSMod_usermod18 = 149 , eMSMod_usermod19 = 150 , eMSMod_usermod20 = 151 ,
  eMSMod_usermod21 = 152 , eMSMod_usermod22 = 153 , eMSMod_usermod23 = 154 , eMSMod_usermod24 = 155 ,
  eMSMod_usermod25 = 156 , eMSMod_usermod26 = 157 , eMSMod_usermod27 = 158 , eMSMod_usermod28 = 159 ,
  eMSMod_usermod29 = 160 , eMSMod_usermod30 = 161 , eMSMod_sulfinicacid = 162 , eMSMod_arg2orn = 163 ,
  eMSMod_dehydro = 164 , eMSMod_carboxykynurenin = 165 , eMSMod_sumoylation = 166 , eMSMod_iTRAQ114nterm = 167 ,
  eMSMod_iTRAQ114K = 168 , eMSMod_iTRAQ114Y = 169 , eMSMod_iTRAQ115nterm = 170 , eMSMod_iTRAQ115K = 171 ,
  eMSMod_iTRAQ115Y = 172 , eMSMod_iTRAQ116nterm = 173 , eMSMod_iTRAQ116K = 174 , eMSMod_iTRAQ116Y = 175 ,
  eMSMod_iTRAQ117nterm = 176 , eMSMod_iTRAQ117K = 177 , eMSMod_iTRAQ117Y = 178 , eMSMod_mmts = 179 ,
  eMSMod_lys_2H4 = 180 , eMSMod_lys_13C615N2 = 181 , eMSMod_hexNAcN = 182 , eMSMod_dHexHexNAcN = 183 ,
  eMSMod_hexNAcS = 184 , eMSMod_hexNAcT = 185 , eMSMod_mod186 = 186 , eMSMod_mod187 = 187 ,
  eMSMod_mod188 = 188 , eMSMod_mod189 = 189 , eMSMod_mod190 = 190 , eMSMod_mod191 = 191 ,
  eMSMod_mod192 = 192 , eMSMod_mod193 = 193 , eMSMod_mod194 = 194 , eMSMod_mod195 = 195 ,
  eMSMod_mod196 = 196 , eMSMod_mod197 = 197 , eMSMod_mod198 = 198 , eMSMod_mod199 = 199 ,
  eMSMod_mod200 = 200 , eMSMod_mod201 = 201 , eMSMod_mod202 = 202 , eMSMod_mod203 = 203 ,
  eMSMod_mod204 = 204 , eMSMod_mod205 = 205 , eMSMod_mod206 = 206 , eMSMod_mod207 = 207 ,
  eMSMod_mod208 = 208 , eMSMod_mod209 = 209 , eMSMod_mod210 = 210 , eMSMod_mod211 = 211 ,
  eMSMod_mod212 = 212 , eMSMod_mod213 = 213 , eMSMod_mod214 = 214 , eMSMod_mod215 = 215 ,
  eMSMod_mod216 = 216 , eMSMod_mod217 = 217 , eMSMod_mod218 = 218 , eMSMod_mod219 = 219 ,
  eMSMod_mod220 = 220 , eMSMod_mod221 = 221 , eMSMod_mod222 = 222 , eMSMod_mod223 = 223 ,
  eMSMod_mod224 = 224 , eMSMod_mod225 = 225 , eMSMod_mod226 = 226 , eMSMod_mod227 = 227 ,
  eMSMod_mod228 = 228 , eMSMod_mod229 = 229 , eMSMod_mod230 = 230 , eMSMod_max = 231 ,
  eMSMod_unknown = 9999 , eMSMod_none = 10000
} enumerate modifications More...
enum class CMSModHit_Base::E_memberIndex { CMSModHit_Base::e__allMandatory = 0 , CMSModHit_Base::e_site , CMSModHit_Base::e_modtype } enum class CMSModSpec_Base::E_memberIndex {
  CMSModSpec_Base::e__allMandatory = 0 , CMSModSpec_Base::e_mod , CMSModSpec_Base::e_type , CMSModSpec_Base::e_name ,
  CMSModSpec_Base::e_monomass , CMSModSpec_Base::e_averagemass , CMSModSpec_Base::e_n15mass , CMSModSpec_Base::e_residues ,
  CMSModSpec_Base::e_neutralloss , CMSModSpec_Base::e_unimod , CMSModSpec_Base::e_psi_ms
} enum EMSModType {
  eMSModType_modaa = 0 , eMSModType_modn = 1 , eMSModType_modnaa = 2 , eMSModType_modc = 3 ,
  eMSModType_modcaa = 4 , eMSModType_modnp = 5 , eMSModType_modnpaa = 6 , eMSModType_modcp = 7 ,
  eMSModType_modcpaa = 8 , eMSModType_modmax = 9
} enumerate modification types More...
enum class CMSMZHit_Base::E_memberIndex {
  CMSMZHit_Base::e__allMandatory = 0 , CMSMZHit_Base::e_ion , CMSMZHit_Base::e_charge , CMSMZHit_Base::e_number ,
  CMSMZHit_Base::e_mz , CMSMZHit_Base::e_index , CMSMZHit_Base::e_moreion , CMSMZHit_Base::e_annotation
} enum class CMSOutFile_Base::E_memberIndex { CMSOutFile_Base::e__allMandatory = 0 , CMSOutFile_Base::e_outfile , CMSOutFile_Base::e_outfiletype , CMSOutFile_Base::e_includerequest } enum class CMSPepHit_Base::E_memberIndex {
  CMSPepHit_Base::e__allMandatory = 0 , CMSPepHit_Base::e_start , CMSPepHit_Base::e_stop , CMSPepHit_Base::e_gi ,
  CMSPepHit_Base::e_accession , CMSPepHit_Base::e_defline , CMSPepHit_Base::e_protlength , CMSPepHit_Base::e_oid ,
  CMSPepHit_Base::e_reversed , CMSPepHit_Base::e_pepstart , CMSPepHit_Base::e_pepstop
} enum class CMSRequest_Base::E_memberIndex {
  CMSRequest_Base::e__allMandatory = 0 , CMSRequest_Base::e_spectra , CMSRequest_Base::e_settings , CMSRequest_Base::e_rid ,
  CMSRequest_Base::e_moresettings , CMSRequest_Base::e_modset
} enum class CMSResponse_Base::E_memberIndex {
  CMSResponse_Base::e__allMandatory = 0 , CMSResponse_Base::e_hitsets , CMSResponse_Base::e_scale , CMSResponse_Base::e_rid ,
  CMSResponse_Base::e_error , CMSResponse_Base::e_version , CMSResponse_Base::e_email , CMSResponse_Base::e_dbversion ,
  CMSResponse_Base::e_bioseqs
} enum EMSResponseError { eMSResponseError_none = 0 , eMSResponseError_generalerr = 1 , eMSResponseError_noblastdb = 2 , eMSResponseError_noinput = 3 } error return for the entire response More...
enum class CMSScoreSet_Base::E_memberIndex { CMSScoreSet_Base::e__allMandatory = 0 , CMSScoreSet_Base::e_name , CMSScoreSet_Base::e_value } enum class CMSSearch_Base::E_memberIndex { CMSSearch_Base::e__allMandatory = 0 , CMSSearch_Base::e_request , CMSSearch_Base::e_response } enum class CMSSearchSettings_Base::E_memberIndex {
  CMSSearchSettings_Base::e__allMandatory = 0 , CMSSearchSettings_Base::e_precursorsearchtype , CMSSearchSettings_Base::e_productsearchtype , CMSSearchSettings_Base::e_ionstosearch ,
  CMSSearchSettings_Base::e_peptol , CMSSearchSettings_Base::e_msmstol , CMSSearchSettings_Base::e_zdep , CMSSearchSettings_Base::e_cutoff ,
  CMSSearchSettings_Base::e_cutlo , CMSSearchSettings_Base::e_cuthi , CMSSearchSettings_Base::e_cutinc , CMSSearchSettings_Base::e_singlewin ,
  CMSSearchSettings_Base::e_doublewin , CMSSearchSettings_Base::e_singlenum , CMSSearchSettings_Base::e_doublenum , CMSSearchSettings_Base::e_fixed ,
  CMSSearchSettings_Base::e_variable , CMSSearchSettings_Base::e_enzyme , CMSSearchSettings_Base::e_missedcleave , CMSSearchSettings_Base::e_hitlistlen ,
  CMSSearchSettings_Base::e_db , CMSSearchSettings_Base::e_tophitnum , CMSSearchSettings_Base::e_minhit , CMSSearchSettings_Base::e_minspectra ,
  CMSSearchSettings_Base::e_scale , CMSSearchSettings_Base::e_maxmods , CMSSearchSettings_Base::e_taxids , CMSSearchSettings_Base::e_chargehandling ,
  CMSSearchSettings_Base::e_usermods , CMSSearchSettings_Base::e_pseudocount , CMSSearchSettings_Base::e_searchb1 , CMSSearchSettings_Base::e_searchctermproduct ,
  CMSSearchSettings_Base::e_maxproductions , CMSSearchSettings_Base::e_minnoenzyme , CMSSearchSettings_Base::e_maxnoenzyme , CMSSearchSettings_Base::e_exactmass ,
  CMSSearchSettings_Base::e_settingid , CMSSearchSettings_Base::e_iterativesettings , CMSSearchSettings_Base::e_precursorcull , CMSSearchSettings_Base::e_infiles ,
  CMSSearchSettings_Base::e_outfiles , CMSSearchSettings_Base::e_nocorrelationscore , CMSSearchSettings_Base::e_probfollowingion , CMSSearchSettings_Base::e_nmethionine ,
  CMSSearchSettings_Base::e_automassadjust , CMSSearchSettings_Base::e_lomasscutoff , CMSSearchSettings_Base::e_libsearchsettings , CMSSearchSettings_Base::e_noprolineions ,
  CMSSearchSettings_Base::e_reversesearch , CMSSearchSettings_Base::e_othersettings , CMSSearchSettings_Base::e_numisotopes , CMSSearchSettings_Base::e_pepppm ,
  CMSSearchSettings_Base::e_msmsppm , CMSSearchSettings_Base::e_reportedhitcount
} enum EMSSearchType {
  eMSSearchType_monoisotopic = 0 , eMSSearchType_average = 1 , eMSSearchType_monon15 = 2 , eMSSearchType_exact = 3 ,
  eMSSearchType_multiisotope = 4 , eMSSearchType_max = 5
} what type of atomic mass to use More...
enum EMSSerialDataFormat {
  eMSSerialDataFormat_none = 0 , eMSSerialDataFormat_asntext = 1 , eMSSerialDataFormat_asnbinary = 2 , eMSSerialDataFormat_xml = 3 ,
  eMSSerialDataFormat_csv = 4 , eMSSerialDataFormat_pepxml = 5 , eMSSerialDataFormat_xmlbz2 = 6
} Access to EMSSerialDataFormat's attributes (values, names) as defined in spec. More...
enum class CMSSpectrum_Base::E_memberIndex {
  CMSSpectrum_Base::e__allMandatory = 0 , CMSSpectrum_Base::e_number , CMSSpectrum_Base::e_charge , CMSSpectrum_Base::e_precursormz ,
  CMSSpectrum_Base::e_mz , CMSSpectrum_Base::e_abundance , CMSSpectrum_Base::e_iscale , CMSSpectrum_Base::e_ids ,
  CMSSpectrum_Base::e_namevalue
} enum EMSSpectrumFileType {
  eMSSpectrumFileType_dta = 0 , eMSSpectrumFileType_dtablank = 1 , eMSSpectrumFileType_dtaxml = 2 , eMSSpectrumFileType_asc = 3 ,
  eMSSpectrumFileType_pkl = 4 , eMSSpectrumFileType_pks = 5 , eMSSpectrumFileType_sciex = 6 , eMSSpectrumFileType_mgf = 7 ,
  eMSSpectrumFileType_unknown = 8 , eMSSpectrumFileType_oms = 9 , eMSSpectrumFileType_omx = 10 , eMSSpectrumFileType_xml = 11 ,
  eMSSpectrumFileType_omxbz2 = 12
} Access to EMSSpectrumFileType's attributes (values, names) as defined in spec. More...
enum EMSUserAnnot { eMSUserAnnot_none = 0 , eMSUserAnnot_delete = 1 , eMSUserAnnot_flag = 2 } MSHitSet annotation by end user. More...
enum EMSZdependence { eMSZdependence_independent = 0 , eMSZdependence_linearwithz = 1 , eMSZdependence_max = 2 } what is the charge dependence of the mass tolerance? More...
enum class CNameValue_Base::E_memberIndex { CNameValue_Base::e__allMandatory = 0 , CNameValue_Base::e_name , CNameValue_Base::e_value } CMSBioseq::CMSBioseq (void) CMSBioseq::~CMSBioseq (void) CMSBioseq::CMSBioseq (const CMSBioseq &value) CMSBioseq & CMSBioseq::operator= (const CMSBioseq &value) CMSBioseq_Base::CMSBioseq_Base (void) virtual CMSBioseq_Base::~CMSBioseq_Base (void) CMSBioseq_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSBioseq_Base::IsSetOid (void) const blast library oid Check if a value has been assigned to Oid data member. More...
bool CMSBioseq_Base::CanGetOid (void) const Check if it is safe to call GetOid method. More...
void CMSBioseq_Base::ResetOid (void) Reset Oid data member. More...
TOid CMSBioseq_Base::GetOid (void) const Get the Oid member data. More...
void CMSBioseq_Base::SetOid (TOid value) Assign a value to Oid data member. More...
TOid & CMSBioseq_Base::SetOid (void) Assign a value to Oid data member. More...
bool CMSBioseq_Base::IsSetSeq (void) const Check if a value has been assigned to Seq data member. More...
bool CMSBioseq_Base::CanGetSeq (void) const Check if it is safe to call GetSeq method. More...
void CMSBioseq_Base::ResetSeq (void) Reset Seq data member. More...
const TSeq & CMSBioseq_Base::GetSeq (void) const Get the Seq member data. More...
void CMSBioseq_Base::SetSeq (TSeq &value) Assign a value to Seq data member. More...
TSeq & CMSBioseq_Base::SetSeq (void) Assign a value to Seq data member. More...
virtual void CMSBioseq_Base::Reset (void) Reset the whole object. More...
CMSBioseq_Base::CMSBioseq_Base (const CMSBioseq_Base &) CMSBioseq_Base & CMSBioseq_Base::operator= (const CMSBioseq_Base &) CMSBioseqSet_Base::CMSBioseqSet_Base (void) virtual CMSBioseqSet_Base::~CMSBioseqSet_Base (void) CMSBioseqSet_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSBioseqSet_Base::IsSet (void) const Check if a value has been assigned to data member. More...
bool CMSBioseqSet_Base::CanGet (void) const Check if it is safe to call Get method. More...
void CMSBioseqSet_Base::Reset (void) Reset data member. More...
const Tdata & CMSBioseqSet_Base::Get (void) const Get the member data. More...
Tdata & CMSBioseqSet_Base::Set (void) Assign a value to data member. More...
CMSBioseqSet_Base::operator const Tdata & (void) const Conversion operator to 'const Tdata' type. More...
CMSBioseqSet_Base::operator Tdata & (void) Conversion operator to 'Tdata' type. More...
CMSBioseqSet_Base::CMSBioseqSet_Base (const CMSBioseqSet_Base &) CMSBioseqSet_Base & CMSBioseqSet_Base::operator= (const CMSBioseqSet_Base &) CMSChargeHandle::CMSChargeHandle (void) CMSChargeHandle::~CMSChargeHandle (void) CMSChargeHandle::CMSChargeHandle (const CMSChargeHandle &value) CMSChargeHandle & CMSChargeHandle::operator= (const CMSChargeHandle &value) CMSChargeHandle_Base::CMSChargeHandle_Base (void) virtual CMSChargeHandle_Base::~CMSChargeHandle_Base (void) CMSChargeHandle_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSChargeHandle_Base::IsSetCalcplusone (void) const do we guess charge one? Check if a value has been assigned to Calcplusone data member. More...
bool CMSChargeHandle_Base::CanGetCalcplusone (void) const Check if it is safe to call GetCalcplusone method. More...
void CMSChargeHandle_Base::ResetCalcplusone (void) Reset Calcplusone data member. More...
void CMSChargeHandle_Base::SetDefaultCalcplusone (void) Assign default value to Calcplusone data member. More...
TCalcplusone CMSChargeHandle_Base::GetCalcplusone (void) const Get the Calcplusone member data. More...
void CMSChargeHandle_Base::SetCalcplusone (TCalcplusone value) Assign a value to Calcplusone data member. More...
TCalcplusone & CMSChargeHandle_Base::SetCalcplusone (void) Assign a value to Calcplusone data member. More...
bool CMSChargeHandle_Base::IsSetCalccharge (void) const how do we handle charges? Check if a value has been assigned to Calccharge data member. More...
bool CMSChargeHandle_Base::CanGetCalccharge (void) const Check if it is safe to call GetCalccharge method. More...
void CMSChargeHandle_Base::ResetCalccharge (void) Reset Calccharge data member. More...
void CMSChargeHandle_Base::SetDefaultCalccharge (void) Assign default value to Calccharge data member. More...
TCalccharge CMSChargeHandle_Base::GetCalccharge (void) const Get the Calccharge member data. More...
void CMSChargeHandle_Base::SetCalccharge (TCalccharge value) Assign a value to Calccharge data member. More...
TCalccharge & CMSChargeHandle_Base::SetCalccharge (void) Assign a value to Calccharge data member. More...
bool CMSChargeHandle_Base::IsSetMincharge (void) const if userange, what is the min? Check if a value has been assigned to Mincharge data member. More...
bool CMSChargeHandle_Base::CanGetMincharge (void) const Check if it is safe to call GetMincharge method. More...
void CMSChargeHandle_Base::ResetMincharge (void) Reset Mincharge data member. More...
void CMSChargeHandle_Base::SetDefaultMincharge (void) Assign default value to Mincharge data member. More...
TMincharge CMSChargeHandle_Base::GetMincharge (void) const Get the Mincharge member data. More...
void CMSChargeHandle_Base::SetMincharge (TMincharge value) Assign a value to Mincharge data member. More...
TMincharge & CMSChargeHandle_Base::SetMincharge (void) Assign a value to Mincharge data member. More...
bool CMSChargeHandle_Base::IsSetMaxcharge (void) const if userange, what is the max? Check if a value has been assigned to Maxcharge data member. More...
bool CMSChargeHandle_Base::CanGetMaxcharge (void) const Check if it is safe to call GetMaxcharge method. More...
void CMSChargeHandle_Base::ResetMaxcharge (void) Reset Maxcharge data member. More...
void CMSChargeHandle_Base::SetDefaultMaxcharge (void) Assign default value to Maxcharge data member. More...
TMaxcharge CMSChargeHandle_Base::GetMaxcharge (void) const Get the Maxcharge member data. More...
void CMSChargeHandle_Base::SetMaxcharge (TMaxcharge value) Assign a value to Maxcharge data member. More...
TMaxcharge & CMSChargeHandle_Base::SetMaxcharge (void) Assign a value to Maxcharge data member. More...
bool CMSChargeHandle_Base::IsSetConsidermult (void) const at which precursor charge to consider +2 ions? Check if a value has been assigned to Considermult data member. More...
bool CMSChargeHandle_Base::CanGetConsidermult (void) const Check if it is safe to call GetConsidermult method. More...
void CMSChargeHandle_Base::ResetConsidermult (void) Reset Considermult data member. More...
void CMSChargeHandle_Base::SetDefaultConsidermult (void) Assign default value to Considermult data member. More...
TConsidermult CMSChargeHandle_Base::GetConsidermult (void) const Get the Considermult member data. More...
void CMSChargeHandle_Base::SetConsidermult (TConsidermult value) Assign a value to Considermult data member. More...
TConsidermult & CMSChargeHandle_Base::SetConsidermult (void) Assign a value to Considermult data member. More...
bool CMSChargeHandle_Base::IsSetPlusone (void) const what % of peaks below precursor needed to call as +1 Check if a value has been assigned to Plusone data member. More...
bool CMSChargeHandle_Base::CanGetPlusone (void) const Check if it is safe to call GetPlusone method. More...
void CMSChargeHandle_Base::ResetPlusone (void) Reset Plusone data member. More...
TPlusone CMSChargeHandle_Base::GetPlusone (void) const Get the Plusone member data. More...
void CMSChargeHandle_Base::SetPlusone (TPlusone value) Assign a value to Plusone data member. More...
TPlusone & CMSChargeHandle_Base::SetPlusone (void) Assign a value to Plusone data member. More...
bool CMSChargeHandle_Base::IsSetMaxproductcharge (void) const maximum product ion charge Check if a value has been assigned to Maxproductcharge data member. More...
bool CMSChargeHandle_Base::CanGetMaxproductcharge (void) const Check if it is safe to call GetMaxproductcharge method. More...
void CMSChargeHandle_Base::ResetMaxproductcharge (void) Reset Maxproductcharge data member. More...
TMaxproductcharge CMSChargeHandle_Base::GetMaxproductcharge (void) const Get the Maxproductcharge member data. More...
void CMSChargeHandle_Base::SetMaxproductcharge (TMaxproductcharge value) Assign a value to Maxproductcharge data member. More...
TMaxproductcharge & CMSChargeHandle_Base::SetMaxproductcharge (void) Assign a value to Maxproductcharge data member. More...
bool CMSChargeHandle_Base::IsSetProdlesspre (void) const product charge always less thanor equal to precursor? Check if a value has been assigned to Prodlesspre data member. More...
bool CMSChargeHandle_Base::CanGetProdlesspre (void) const Check if it is safe to call GetProdlesspre method. More...
void CMSChargeHandle_Base::ResetProdlesspre (void) Reset Prodlesspre data member. More...
TProdlesspre CMSChargeHandle_Base::GetProdlesspre (void) const Get the Prodlesspre member data. More...
void CMSChargeHandle_Base::SetProdlesspre (TProdlesspre value) Assign a value to Prodlesspre data member. More...
TProdlesspre & CMSChargeHandle_Base::SetProdlesspre (void) Assign a value to Prodlesspre data member. More...
bool CMSChargeHandle_Base::IsSetNegative (void) const negative ion search if -1, positive ion if 1 Check if a value has been assigned to Negative data member. More...
bool CMSChargeHandle_Base::CanGetNegative (void) const Check if it is safe to call GetNegative method. More...
void CMSChargeHandle_Base::ResetNegative (void) Reset Negative data member. More...
void CMSChargeHandle_Base::SetDefaultNegative (void) Assign default value to Negative data member. More...
TNegative CMSChargeHandle_Base::GetNegative (void) const Get the Negative member data. More...
void CMSChargeHandle_Base::SetNegative (TNegative value) Assign a value to Negative data member. More...
TNegative & CMSChargeHandle_Base::SetNegative (void) Assign a value to Negative data member. More...
virtual void CMSChargeHandle_Base::Reset (void) Reset the whole object. More...
CMSChargeHandle_Base::CMSChargeHandle_Base (const CMSChargeHandle_Base &) CMSChargeHandle_Base & CMSChargeHandle_Base::operator= (const CMSChargeHandle_Base &) CMSHits_Base::CMSHits_Base (void) virtual CMSHits_Base::~CMSHits_Base (void) CMSHits_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSHits_Base::IsSetEvalue (void) const E-value (expect value) Check if a value has been assigned to Evalue data member. More...
bool CMSHits_Base::CanGetEvalue (void) const Check if it is safe to call GetEvalue method. More...
void CMSHits_Base::ResetEvalue (void) Reset Evalue data member. More...
TEvalue CMSHits_Base::GetEvalue (void) const Get the Evalue member data. More...
void CMSHits_Base::SetEvalue (TEvalue value) Assign a value to Evalue data member. More...
TEvalue & CMSHits_Base::SetEvalue (void) Assign a value to Evalue data member. More...
bool CMSHits_Base::IsSetPvalue (void) const P-value (probability value) Check if a value has been assigned to Pvalue data member. More...
bool CMSHits_Base::CanGetPvalue (void) const Check if it is safe to call GetPvalue method. More...
void CMSHits_Base::ResetPvalue (void) Reset Pvalue data member. More...
TPvalue CMSHits_Base::GetPvalue (void) const Get the Pvalue member data. More...
void CMSHits_Base::SetPvalue (TPvalue value) Assign a value to Pvalue data member. More...
TPvalue & CMSHits_Base::SetPvalue (void) Assign a value to Pvalue data member. More...
bool CMSHits_Base::IsSetCharge (void) const the charge state used in search. More...
bool CMSHits_Base::CanGetCharge (void) const Check if it is safe to call GetCharge method. More...
void CMSHits_Base::ResetCharge (void) Reset Charge data member. More...
TCharge CMSHits_Base::GetCharge (void) const Get the Charge member data. More...
void CMSHits_Base::SetCharge (TCharge value) Assign a value to Charge data member. More...
TCharge & CMSHits_Base::SetCharge (void) Assign a value to Charge data member. More...
bool CMSHits_Base::IsSetPephits (void) const peptides that match this hit Check if a value has been assigned to Pephits data member. More...
bool CMSHits_Base::CanGetPephits (void) const Check if it is safe to call GetPephits method. More...
void CMSHits_Base::ResetPephits (void) Reset Pephits data member. More...
const TPephits & CMSHits_Base::GetPephits (void) const Get the Pephits member data. More...
TPephits & CMSHits_Base::SetPephits (void) Assign a value to Pephits data member. More...
bool CMSHits_Base::IsSetMzhits (void) const ions hit Check if a value has been assigned to Mzhits data member. More...
bool CMSHits_Base::CanGetMzhits (void) const Check if it is safe to call GetMzhits method. More...
void CMSHits_Base::ResetMzhits (void) Reset Mzhits data member. More...
const TMzhits & CMSHits_Base::GetMzhits (void) const Get the Mzhits member data. More...
TMzhits & CMSHits_Base::SetMzhits (void) Assign a value to Mzhits data member. More...
bool CMSHits_Base::IsSetPepstring (void) const the peptide sequence Check if a value has been assigned to Pepstring data member. More...
bool CMSHits_Base::CanGetPepstring (void) const Check if it is safe to call GetPepstring method. More...
void CMSHits_Base::ResetPepstring (void) Reset Pepstring data member. More...
const TPepstring & CMSHits_Base::GetPepstring (void) const Get the Pepstring member data. More...
void CMSHits_Base::SetPepstring (const TPepstring &value) Assign a value to Pepstring data member. More...
void CMSHits_Base::SetPepstring (TPepstring &&value) TPepstring & CMSHits_Base::SetPepstring (void) Assign a value to Pepstring data member. More...
bool CMSHits_Base::IsSetMass (void) const scaled experimental mass of peptide in Da Check if a value has been assigned to Mass data member. More...
bool CMSHits_Base::CanGetMass (void) const Check if it is safe to call GetMass method. More...
void CMSHits_Base::ResetMass (void) Reset Mass data member. More...
TMass CMSHits_Base::GetMass (void) const Get the Mass member data. More...
void CMSHits_Base::SetMass (TMass value) Assign a value to Mass data member. More...
TMass & CMSHits_Base::SetMass (void) Assign a value to Mass data member. More...
bool CMSHits_Base::IsSetMods (void) const modifications to sequence Check if a value has been assigned to Mods data member. More...
bool CMSHits_Base::CanGetMods (void) const Check if it is safe to call GetMods method. More...
void CMSHits_Base::ResetMods (void) Reset Mods data member. More...
const TMods & CMSHits_Base::GetMods (void) const Get the Mods member data. More...
TMods & CMSHits_Base::SetMods (void) Assign a value to Mods data member. More...
bool CMSHits_Base::IsSetPepstart (void) const AA before the peptide (depricated) Check if a value has been assigned to Pepstart data member. More...
bool CMSHits_Base::CanGetPepstart (void) const Check if it is safe to call GetPepstart method. More...
void CMSHits_Base::ResetPepstart (void) Reset Pepstart data member. More...
const TPepstart & CMSHits_Base::GetPepstart (void) const Get the Pepstart member data. More...
void CMSHits_Base::SetPepstart (const TPepstart &value) Assign a value to Pepstart data member. More...
void CMSHits_Base::SetPepstart (TPepstart &&value) TPepstart & CMSHits_Base::SetPepstart (void) Assign a value to Pepstart data member. More...
bool CMSHits_Base::IsSetPepstop (void) const AA after the peptide (depricated) Check if a value has been assigned to Pepstop data member. More...
bool CMSHits_Base::CanGetPepstop (void) const Check if it is safe to call GetPepstop method. More...
void CMSHits_Base::ResetPepstop (void) Reset Pepstop data member. More...
const TPepstop & CMSHits_Base::GetPepstop (void) const Get the Pepstop member data. More...
void CMSHits_Base::SetPepstop (const TPepstop &value) Assign a value to Pepstop data member. More...
void CMSHits_Base::SetPepstop (TPepstop &&value) TPepstop & CMSHits_Base::SetPepstop (void) Assign a value to Pepstop data member. More...
bool CMSHits_Base::IsSetProtlength (void) const length of protein hit (depricated) Check if a value has been assigned to Protlength data member. More...
bool CMSHits_Base::CanGetProtlength (void) const Check if it is safe to call GetProtlength method. More...
void CMSHits_Base::ResetProtlength (void) Reset Protlength data member. More...
TProtlength CMSHits_Base::GetProtlength (void) const Get the Protlength member data. More...
void CMSHits_Base::SetProtlength (TProtlength value) Assign a value to Protlength data member. More...
TProtlength & CMSHits_Base::SetProtlength (void) Assign a value to Protlength data member. More...
bool CMSHits_Base::IsSetTheomass (void) const scaled theoretical mass of peptide hit Check if a value has been assigned to Theomass data member. More...
bool CMSHits_Base::CanGetTheomass (void) const Check if it is safe to call GetTheomass method. More...
void CMSHits_Base::ResetTheomass (void) Reset Theomass data member. More...
TTheomass CMSHits_Base::GetTheomass (void) const Get the Theomass member data. More...
void CMSHits_Base::SetTheomass (TTheomass value) Assign a value to Theomass data member. More...
TTheomass & CMSHits_Base::SetTheomass (void) Assign a value to Theomass data member. More...
bool CMSHits_Base::IsSetOid (void) const blast library oid (depricated) Check if a value has been assigned to Oid data member. More...
bool CMSHits_Base::CanGetOid (void) const Check if it is safe to call GetOid method. More...
void CMSHits_Base::ResetOid (void) Reset Oid data member. More...
TOid CMSHits_Base::GetOid (void) const Get the Oid member data. More...
void CMSHits_Base::SetOid (TOid value) Assign a value to Oid data member. More...
TOid & CMSHits_Base::SetOid (void) Assign a value to Oid data member. More...
bool CMSHits_Base::IsSetScores (void) const optional scores (for library search) Check if a value has been assigned to Scores data member. More...
bool CMSHits_Base::CanGetScores (void) const Check if it is safe to call GetScores method. More...
void CMSHits_Base::ResetScores (void) Reset Scores data member. More...
const TScores & CMSHits_Base::GetScores (void) const Get the Scores member data. More...
TScores & CMSHits_Base::SetScores (void) Assign a value to Scores data member. More...
bool CMSHits_Base::IsSetLibaccession (void) const library search accesssion Check if a value has been assigned to Libaccession data member. More...
bool CMSHits_Base::CanGetLibaccession (void) const Check if it is safe to call GetLibaccession method. More...
void CMSHits_Base::ResetLibaccession (void) Reset Libaccession data member. More...
const TLibaccession & CMSHits_Base::GetLibaccession (void) const Get the Libaccession member data. More...
void CMSHits_Base::SetLibaccession (const TLibaccession &value) Assign a value to Libaccession data member. More...
void CMSHits_Base::SetLibaccession (TLibaccession &&value) TLibaccession & CMSHits_Base::SetLibaccession (void) Assign a value to Libaccession data member. More...
virtual void CMSHits_Base::Reset (void) Reset the whole object. More...
CMSHits_Base::CMSHits_Base (const CMSHits_Base &) CMSHits_Base & CMSHits_Base::operator= (const CMSHits_Base &) CMSHitSet::CMSHitSet (void) CMSHitSet::~CMSHitSet (void) CMSHitSet::CMSHitSet (const CMSHitSet &value) CMSHitSet & CMSHitSet::operator= (const CMSHitSet &value) CMSHitSet_Base::CMSHitSet_Base (void) virtual CMSHitSet_Base::~CMSHitSet_Base (void) CMSHitSet_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSHitSet_Base::IsSetNumber (void) const unique number of spectrum Check if a value has been assigned to Number data member. More...
bool CMSHitSet_Base::CanGetNumber (void) const Check if it is safe to call GetNumber method. More...
void CMSHitSet_Base::ResetNumber (void) Reset Number data member. More...
TNumber CMSHitSet_Base::GetNumber (void) const Get the Number member data. More...
void CMSHitSet_Base::SetNumber (TNumber value) Assign a value to Number data member. More...
TNumber & CMSHitSet_Base::SetNumber (void) Assign a value to Number data member. More...
bool CMSHitSet_Base::IsSetError (void) const error, if any Check if a value has been assigned to Error data member. More...
bool CMSHitSet_Base::CanGetError (void) const Check if it is safe to call GetError method. More...
void CMSHitSet_Base::ResetError (void) Reset Error data member. More...
TError CMSHitSet_Base::GetError (void) const Get the Error member data. More...
void CMSHitSet_Base::SetError (TError value) Assign a value to Error data member. More...
TError & CMSHitSet_Base::SetError (void) Assign a value to Error data member. More...
bool CMSHitSet_Base::IsSetHits (void) const set of hit to spectrum Check if a value has been assigned to Hits data member. More...
bool CMSHitSet_Base::CanGetHits (void) const Check if it is safe to call GetHits method. More...
void CMSHitSet_Base::ResetHits (void) Reset Hits data member. More...
const THits & CMSHitSet_Base::GetHits (void) const Get the Hits member data. More...
THits & CMSHitSet_Base::SetHits (void) Assign a value to Hits data member. More...
bool CMSHitSet_Base::IsSetIds (void) const filenames or other ids of spectra searched Check if a value has been assigned to Ids data member. More...
bool CMSHitSet_Base::CanGetIds (void) const Check if it is safe to call GetIds method. More...
void CMSHitSet_Base::ResetIds (void) Reset Ids data member. More...
const TIds & CMSHitSet_Base::GetIds (void) const Get the Ids member data. More...
TIds & CMSHitSet_Base::SetIds (void) Assign a value to Ids data member. More...
bool CMSHitSet_Base::IsSetNamevalue (void) const extra info: retention times, etc. More...
bool CMSHitSet_Base::CanGetNamevalue (void) const Check if it is safe to call GetNamevalue method. More...
void CMSHitSet_Base::ResetNamevalue (void) Reset Namevalue data member. More...
const TNamevalue & CMSHitSet_Base::GetNamevalue (void) const Get the Namevalue member data. More...
TNamevalue & CMSHitSet_Base::SetNamevalue (void) Assign a value to Namevalue data member. More...
bool CMSHitSet_Base::IsSetSettingid (void) const id of the search setting used Check if a value has been assigned to Settingid data member. More...
bool CMSHitSet_Base::CanGetSettingid (void) const Check if it is safe to call GetSettingid method. More...
void CMSHitSet_Base::ResetSettingid (void) Reset Settingid data member. More...
TSettingid CMSHitSet_Base::GetSettingid (void) const Get the Settingid member data. More...
void CMSHitSet_Base::SetSettingid (TSettingid value) Assign a value to Settingid data member. More...
TSettingid & CMSHitSet_Base::SetSettingid (void) Assign a value to Settingid data member. More...
bool CMSHitSet_Base::IsSetUserannotation (void) const allows users to flag certain Check if a value has been assigned to Userannotation data member. More...
bool CMSHitSet_Base::CanGetUserannotation (void) const Check if it is safe to call GetUserannotation method. More...
void CMSHitSet_Base::ResetUserannotation (void) Reset Userannotation data member. More...
TUserannotation CMSHitSet_Base::GetUserannotation (void) const Get the Userannotation member data. More...
void CMSHitSet_Base::SetUserannotation (TUserannotation value) Assign a value to Userannotation data member. More...
TUserannotation & CMSHitSet_Base::SetUserannotation (void) Assign a value to Userannotation data member. More...
virtual void CMSHitSet_Base::Reset (void) Reset the whole object. More...
CMSHitSet_Base::CMSHitSet_Base (const CMSHitSet_Base &) CMSHitSet_Base & CMSHitSet_Base::operator= (const CMSHitSet_Base &) CMSImmonium::CMSImmonium (void) CMSImmonium::~CMSImmonium (void) CMSImmonium::CMSImmonium (const CMSImmonium &value) CMSImmonium & CMSImmonium::operator= (const CMSImmonium &value) CMSImmonium_Base::CMSImmonium_Base (void) virtual CMSImmonium_Base::~CMSImmonium_Base (void) CMSImmonium_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSImmonium_Base::IsSetParent (void) const parent amino acid Check if a value has been assigned to Parent data member. More...
bool CMSImmonium_Base::CanGetParent (void) const Check if it is safe to call GetParent method. More...
void CMSImmonium_Base::ResetParent (void) Reset Parent data member. More...
const TParent & CMSImmonium_Base::GetParent (void) const Get the Parent member data. More...
void CMSImmonium_Base::SetParent (const TParent &value) Assign a value to Parent data member. More...
void CMSImmonium_Base::SetParent (TParent &&value) TParent & CMSImmonium_Base::SetParent (void) Assign a value to Parent data member. More...
bool CMSImmonium_Base::IsSetProduct (void) const product ion code Check if a value has been assigned to Product data member. More...
bool CMSImmonium_Base::CanGetProduct (void) const Check if it is safe to call GetProduct method. More...
void CMSImmonium_Base::ResetProduct (void) Reset Product data member. More...
const TProduct & CMSImmonium_Base::GetProduct (void) const Get the Product member data. More...
void CMSImmonium_Base::SetProduct (const TProduct &value) Assign a value to Product data member. More...
void CMSImmonium_Base::SetProduct (TProduct &&value) TProduct & CMSImmonium_Base::SetProduct (void) Assign a value to Product data member. More...
virtual void CMSImmonium_Base::Reset (void) Reset the whole object. More...
CMSImmonium_Base::CMSImmonium_Base (const CMSImmonium_Base &) CMSImmonium_Base & CMSImmonium_Base::operator= (const CMSImmonium_Base &) CMSInFile::CMSInFile (void) CMSInFile::~CMSInFile (void) CMSInFile::CMSInFile (const CMSInFile &value) CMSInFile & CMSInFile::operator= (const CMSInFile &value) CMSInFile_Base::CMSInFile_Base (void) virtual CMSInFile_Base::~CMSInFile_Base (void) CMSInFile_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSInFile_Base::IsSetInfile (void) const input file name Check if a value has been assigned to Infile data member. More...
bool CMSInFile_Base::CanGetInfile (void) const Check if it is safe to call GetInfile method. More...
void CMSInFile_Base::ResetInfile (void) Reset Infile data member. More...
const TInfile & CMSInFile_Base::GetInfile (void) const Get the Infile member data. More...
void CMSInFile_Base::SetInfile (const TInfile &value) Assign a value to Infile data member. More...
void CMSInFile_Base::SetInfile (TInfile &&value) TInfile & CMSInFile_Base::SetInfile (void) Assign a value to Infile data member. More...
bool CMSInFile_Base::IsSetInfiletype (void) const input file type Check if a value has been assigned to Infiletype data member. More...
bool CMSInFile_Base::CanGetInfiletype (void) const Check if it is safe to call GetInfiletype method. More...
void CMSInFile_Base::ResetInfiletype (void) Reset Infiletype data member. More...
TInfiletype CMSInFile_Base::GetInfiletype (void) const Get the Infiletype member data. More...
void CMSInFile_Base::SetInfiletype (TInfiletype value) Assign a value to Infiletype data member. More...
TInfiletype & CMSInFile_Base::SetInfiletype (void) Assign a value to Infiletype data member. More...
virtual void CMSInFile_Base::Reset (void) Reset the whole object. More...
CMSInFile_Base::CMSInFile_Base (const CMSInFile_Base &) CMSInFile_Base & CMSInFile_Base::operator= (const CMSInFile_Base &) CMSIon::CMSIon (void) CMSIon::~CMSIon (void) CMSIon::CMSIon (const CMSIon &value) CMSIon & CMSIon::operator= (const CMSIon &value) CMSIon_Base::CMSIon_Base (void) virtual CMSIon_Base::~CMSIon_Base (void) CMSIon_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSIon_Base::IsSetNeutralloss (void) const is this peak a neutral loss? Check if a value has been assigned to Neutralloss data member. More...
bool CMSIon_Base::CanGetNeutralloss (void) const Check if it is safe to call GetNeutralloss method. More...
void CMSIon_Base::ResetNeutralloss (void) Reset Neutralloss data member. More...
TNeutralloss CMSIon_Base::GetNeutralloss (void) const Get the Neutralloss member data. More...
void CMSIon_Base::SetNeutralloss (TNeutralloss value) Assign a value to Neutralloss data member. More...
TNeutralloss & CMSIon_Base::SetNeutralloss (void) Assign a value to Neutralloss data member. More...
bool CMSIon_Base::IsSetIsotope (void) const isotopic composition of peak Check if a value has been assigned to Isotope data member. More...
bool CMSIon_Base::CanGetIsotope (void) const Check if it is safe to call GetIsotope method. More...
void CMSIon_Base::ResetIsotope (void) Reset Isotope data member. More...
TIsotope CMSIon_Base::GetIsotope (void) const Get the Isotope member data. More...
void CMSIon_Base::SetIsotope (TIsotope value) Assign a value to Isotope data member. More...
TIsotope & CMSIon_Base::SetIsotope (void) Assign a value to Isotope data member. More...
bool CMSIon_Base::IsSetInternal (void) const if iontype is internal, this is the internal sequence Check if a value has been assigned to Internal data member. More...
bool CMSIon_Base::CanGetInternal (void) const Check if it is safe to call GetInternal method. More...
void CMSIon_Base::ResetInternal (void) Reset Internal data member. More...
const TInternal & CMSIon_Base::GetInternal (void) const Get the Internal member data. More...
void CMSIon_Base::SetInternal (const TInternal &value) Assign a value to Internal data member. More...
void CMSIon_Base::SetInternal (TInternal &&value) TInternal & CMSIon_Base::SetInternal (void) Assign a value to Internal data member. More...
bool CMSIon_Base::IsSetImmonium (void) const if iontype is immonium, show characteristics Check if a value has been assigned to Immonium data member. More...
bool CMSIon_Base::CanGetImmonium (void) const Check if it is safe to call GetImmonium method. More...
void CMSIon_Base::ResetImmonium (void) Reset Immonium data member. More...
const TImmonium & CMSIon_Base::GetImmonium (void) const Get the Immonium member data. More...
void CMSIon_Base::SetImmonium (TImmonium &value) Assign a value to Immonium data member. More...
TImmonium & CMSIon_Base::SetImmonium (void) Assign a value to Immonium data member. More...
virtual void CMSIon_Base::Reset (void) Reset the whole object. More...
CMSIon_Base::CMSIon_Base (const CMSIon_Base &) CMSIon_Base & CMSIon_Base::operator= (const CMSIon_Base &) CMSIonAnnot::CMSIonAnnot (void) CMSIonAnnot::~CMSIonAnnot (void) CMSIonAnnot::CMSIonAnnot (const CMSIonAnnot &value) CMSIonAnnot & CMSIonAnnot::operator= (const CMSIonAnnot &value) CMSIonAnnot_Base::CMSIonAnnot_Base (void) virtual CMSIonAnnot_Base::~CMSIonAnnot_Base (void) CMSIonAnnot_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSIonAnnot_Base::IsSetSuspect (void) const is this peak suspect? Check if a value has been assigned to Suspect data member. More...
bool CMSIonAnnot_Base::CanGetSuspect (void) const Check if it is safe to call GetSuspect method. More...
void CMSIonAnnot_Base::ResetSuspect (void) Reset Suspect data member. More...
TSuspect CMSIonAnnot_Base::GetSuspect (void) const Get the Suspect member data. More...
void CMSIonAnnot_Base::SetSuspect (TSuspect value) Assign a value to Suspect data member. More...
TSuspect & CMSIonAnnot_Base::SetSuspect (void) Assign a value to Suspect data member. More...
bool CMSIonAnnot_Base::IsSetMassdiff (void) const what is the difference in mass from library spectrum? Check if a value has been assigned to Massdiff data member. More...
bool CMSIonAnnot_Base::CanGetMassdiff (void) const Check if it is safe to call GetMassdiff method. More...
void CMSIonAnnot_Base::ResetMassdiff (void) Reset Massdiff data member. More...
TMassdiff CMSIonAnnot_Base::GetMassdiff (void) const Get the Massdiff member data. More...
void CMSIonAnnot_Base::SetMassdiff (TMassdiff value) Assign a value to Massdiff data member. More...
TMassdiff & CMSIonAnnot_Base::SetMassdiff (void) Assign a value to Massdiff data member. More...
bool CMSIonAnnot_Base::IsSetMissingisotope (void) const are the lower mass peaks missing? Check if a value has been assigned to Missingisotope data member. More...
bool CMSIonAnnot_Base::CanGetMissingisotope (void) const Check if it is safe to call GetMissingisotope method. More...
void CMSIonAnnot_Base::ResetMissingisotope (void) Reset Missingisotope data member. More...
TMissingisotope CMSIonAnnot_Base::GetMissingisotope (void) const Get the Missingisotope member data. More...
void CMSIonAnnot_Base::SetMissingisotope (TMissingisotope value) Assign a value to Missingisotope data member. More...
TMissingisotope & CMSIonAnnot_Base::SetMissingisotope (void) Assign a value to Missingisotope data member. More...
virtual void CMSIonAnnot_Base::Reset (void) Reset the whole object. More...
CMSIonAnnot_Base::CMSIonAnnot_Base (const CMSIonAnnot_Base &) CMSIonAnnot_Base & CMSIonAnnot_Base::operator= (const CMSIonAnnot_Base &) CMSIterativeSettings::CMSIterativeSettings (void) CMSIterativeSettings::~CMSIterativeSettings (void) CMSIterativeSettings::CMSIterativeSettings (const CMSIterativeSettings &value) CMSIterativeSettings & CMSIterativeSettings::operator= (const CMSIterativeSettings &value) CMSIterativeSettings_Base::CMSIterativeSettings_Base (void) virtual CMSIterativeSettings_Base::~CMSIterativeSettings_Base (void) CMSIterativeSettings_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSIterativeSettings_Base::IsSetResearchthresh (void) const e-val threshold for re-searching spectra, 0 = always re-search Check if a value has been assigned to Researchthresh data member. More...
bool CMSIterativeSettings_Base::CanGetResearchthresh (void) const Check if it is safe to call GetResearchthresh method. More...
void CMSIterativeSettings_Base::ResetResearchthresh (void) Reset Researchthresh data member. More...
TResearchthresh CMSIterativeSettings_Base::GetResearchthresh (void) const Get the Researchthresh member data. More...
void CMSIterativeSettings_Base::SetResearchthresh (TResearchthresh value) Assign a value to Researchthresh data member. More...
TResearchthresh & CMSIterativeSettings_Base::SetResearchthresh (void) Assign a value to Researchthresh data member. More...
bool CMSIterativeSettings_Base::IsSetSubsetthresh (void) const e-val threshold for picking sequence subset, 0 = all sequences Check if a value has been assigned to Subsetthresh data member. More...
bool CMSIterativeSettings_Base::CanGetSubsetthresh (void) const Check if it is safe to call GetSubsetthresh method. More...
void CMSIterativeSettings_Base::ResetSubsetthresh (void) Reset Subsetthresh data member. More...
TSubsetthresh CMSIterativeSettings_Base::GetSubsetthresh (void) const Get the Subsetthresh member data. More...
void CMSIterativeSettings_Base::SetSubsetthresh (TSubsetthresh value) Assign a value to Subsetthresh data member. More...
TSubsetthresh & CMSIterativeSettings_Base::SetSubsetthresh (void) Assign a value to Subsetthresh data member. More...
bool CMSIterativeSettings_Base::IsSetReplacethresh (void) const e-val threshold for replacing hitset, 0 = only if better Check if a value has been assigned to Replacethresh data member. More...
bool CMSIterativeSettings_Base::CanGetReplacethresh (void) const Check if it is safe to call GetReplacethresh method. More...
void CMSIterativeSettings_Base::ResetReplacethresh (void) Reset Replacethresh data member. More...
TReplacethresh CMSIterativeSettings_Base::GetReplacethresh (void) const Get the Replacethresh member data. More...
void CMSIterativeSettings_Base::SetReplacethresh (TReplacethresh value) Assign a value to Replacethresh data member. More...
TReplacethresh & CMSIterativeSettings_Base::SetReplacethresh (void) Assign a value to Replacethresh data member. More...
virtual void CMSIterativeSettings_Base::Reset (void) Reset the whole object. More...
CMSIterativeSettings_Base::CMSIterativeSettings_Base (const CMSIterativeSettings_Base &) CMSIterativeSettings_Base & CMSIterativeSettings_Base::operator= (const CMSIterativeSettings_Base &) CMSLibrarySettings::CMSLibrarySettings (void) CMSLibrarySettings::~CMSLibrarySettings (void) CMSLibrarySettings::CMSLibrarySettings (const CMSLibrarySettings &value) CMSLibrarySettings & CMSLibrarySettings::operator= (const CMSLibrarySettings &value) CMSLibrarySettings_Base::CMSLibrarySettings_Base (void) virtual CMSLibrarySettings_Base::~CMSLibrarySettings_Base (void) CMSLibrarySettings_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSLibrarySettings_Base::IsSetLibnames (void) const names of search libraries Check if a value has been assigned to Libnames data member. More...
bool CMSLibrarySettings_Base::CanGetLibnames (void) const Check if it is safe to call GetLibnames method. More...
void CMSLibrarySettings_Base::ResetLibnames (void) Reset Libnames data member. More...
const TLibnames & CMSLibrarySettings_Base::GetLibnames (void) const Get the Libnames member data. More...
TLibnames & CMSLibrarySettings_Base::SetLibnames (void) Assign a value to Libnames data member. More...
bool CMSLibrarySettings_Base::IsSetPresearch (void) const should there be a restriction on precursor mass? Check if a value has been assigned to Presearch data member. More...
bool CMSLibrarySettings_Base::CanGetPresearch (void) const Check if it is safe to call GetPresearch method. More...
void CMSLibrarySettings_Base::ResetPresearch (void) Reset Presearch data member. More...
TPresearch CMSLibrarySettings_Base::GetPresearch (void) const Get the Presearch member data. More...
void CMSLibrarySettings_Base::SetPresearch (TPresearch value) Assign a value to Presearch data member. More...
TPresearch & CMSLibrarySettings_Base::SetPresearch (void) Assign a value to Presearch data member. More...
bool CMSLibrarySettings_Base::IsSetUseomssascore (void) const use the omssa score? Check if a value has been assigned to Useomssascore data member. More...
bool CMSLibrarySettings_Base::CanGetUseomssascore (void) const Check if it is safe to call GetUseomssascore method. More...
void CMSLibrarySettings_Base::ResetUseomssascore (void) Reset Useomssascore data member. More...
TUseomssascore CMSLibrarySettings_Base::GetUseomssascore (void) const Get the Useomssascore member data. More...
void CMSLibrarySettings_Base::SetUseomssascore (TUseomssascore value) Assign a value to Useomssascore data member. More...
TUseomssascore & CMSLibrarySettings_Base::SetUseomssascore (void) Assign a value to Useomssascore data member. More...
bool CMSLibrarySettings_Base::IsSetUsereplicatescore (void) const use the number of replicates score? Check if a value has been assigned to Usereplicatescore data member. More...
bool CMSLibrarySettings_Base::CanGetUsereplicatescore (void) const Check if it is safe to call GetUsereplicatescore method. More...
void CMSLibrarySettings_Base::ResetUsereplicatescore (void) Reset Usereplicatescore data member. More...
TUsereplicatescore CMSLibrarySettings_Base::GetUsereplicatescore (void) const Get the Usereplicatescore member data. More...
void CMSLibrarySettings_Base::SetUsereplicatescore (TUsereplicatescore value) Assign a value to Usereplicatescore data member. More...
TUsereplicatescore & CMSLibrarySettings_Base::SetUsereplicatescore (void) Assign a value to Usereplicatescore data member. More...
bool CMSLibrarySettings_Base::IsSetQtofscore (void) const use the qtof score? Check if a value has been assigned to Qtofscore data member. More...
bool CMSLibrarySettings_Base::CanGetQtofscore (void) const Check if it is safe to call GetQtofscore method. More...
void CMSLibrarySettings_Base::ResetQtofscore (void) Reset Qtofscore data member. More...
TQtofscore CMSLibrarySettings_Base::GetQtofscore (void) const Get the Qtofscore member data. More...
void CMSLibrarySettings_Base::SetQtofscore (TQtofscore value) Assign a value to Qtofscore data member. More...
TQtofscore & CMSLibrarySettings_Base::SetQtofscore (void) Assign a value to Qtofscore data member. More...
virtual void CMSLibrarySettings_Base::Reset (void) Reset the whole object. More...
CMSLibrarySettings_Base::CMSLibrarySettings_Base (const CMSLibrarySettings_Base &) CMSLibrarySettings_Base & CMSLibrarySettings_Base::operator= (const CMSLibrarySettings_Base &) CMSMassSet::CMSMassSet (void) CMSMassSet::~CMSMassSet (void) CMSMassSet::CMSMassSet (const CMSMassSet &value) CMSMassSet & CMSMassSet::operator= (const CMSMassSet &value) CMSMassSet_Base::CMSMassSet_Base (void) virtual CMSMassSet_Base::~CMSMassSet_Base (void) CMSMassSet_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSMassSet_Base::IsSetMonomass (void) const Check if a value has been assigned to Monomass data member. More...
bool CMSMassSet_Base::CanGetMonomass (void) const Check if it is safe to call GetMonomass method. More...
void CMSMassSet_Base::ResetMonomass (void) Reset Monomass data member. More...
TMonomass CMSMassSet_Base::GetMonomass (void) const Get the Monomass member data. More...
void CMSMassSet_Base::SetMonomass (TMonomass value) Assign a value to Monomass data member. More...
TMonomass & CMSMassSet_Base::SetMonomass (void) Assign a value to Monomass data member. More...
bool CMSMassSet_Base::IsSetAveragemass (void) const Check if a value has been assigned to Averagemass data member. More...
bool CMSMassSet_Base::CanGetAveragemass (void) const Check if it is safe to call GetAveragemass method. More...
void CMSMassSet_Base::ResetAveragemass (void) Reset Averagemass data member. More...
TAveragemass CMSMassSet_Base::GetAveragemass (void) const Get the Averagemass member data. More...
void CMSMassSet_Base::SetAveragemass (TAveragemass value) Assign a value to Averagemass data member. More...
TAveragemass & CMSMassSet_Base::SetAveragemass (void) Assign a value to Averagemass data member. More...
bool CMSMassSet_Base::IsSetN15mass (void) const Check if a value has been assigned to N15mass data member. More...
bool CMSMassSet_Base::CanGetN15mass (void) const Check if it is safe to call GetN15mass method. More...
void CMSMassSet_Base::ResetN15mass (void) Reset N15mass data member. More...
TN15mass CMSMassSet_Base::GetN15mass (void) const Get the N15mass member data. More...
void CMSMassSet_Base::SetN15mass (TN15mass value) Assign a value to N15mass data member. More...
TN15mass & CMSMassSet_Base::SetN15mass (void) Assign a value to N15mass data member. More...
virtual void CMSMassSet_Base::Reset (void) Reset the whole object. More...
CMSMassSet_Base::CMSMassSet_Base (const CMSMassSet_Base &) CMSMassSet_Base & CMSMassSet_Base::operator= (const CMSMassSet_Base &) CMSModHit::CMSModHit (void) CMSModHit::~CMSModHit (void) CMSModHit::CMSModHit (const CMSModHit &value) CMSModHit & CMSModHit::operator= (const CMSModHit &value) CMSModHit_Base::CMSModHit_Base (void) virtual CMSModHit_Base::~CMSModHit_Base (void) CMSModHit_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSModHit_Base::IsSetSite (void) const the position in the peptide Check if a value has been assigned to Site data member. More...
bool CMSModHit_Base::CanGetSite (void) const Check if it is safe to call GetSite method. More...
void CMSModHit_Base::ResetSite (void) Reset Site data member. More...
TSite CMSModHit_Base::GetSite (void) const Get the Site member data. More...
void CMSModHit_Base::SetSite (TSite value) Assign a value to Site data member. More...
TSite & CMSModHit_Base::SetSite (void) Assign a value to Site data member. More...
bool CMSModHit_Base::IsSetModtype (void) const the type of modification Check if a value has been assigned to Modtype data member. More...
bool CMSModHit_Base::CanGetModtype (void) const Check if it is safe to call GetModtype method. More...
void CMSModHit_Base::ResetModtype (void) Reset Modtype data member. More...
TModtype CMSModHit_Base::GetModtype (void) const Get the Modtype member data. More...
void CMSModHit_Base::SetModtype (TModtype value) Assign a value to Modtype data member. More...
TModtype & CMSModHit_Base::SetModtype (void) Assign a value to Modtype data member. More...
virtual void CMSModHit_Base::Reset (void) Reset the whole object. More...
CMSModHit_Base::CMSModHit_Base (const CMSModHit_Base &) CMSModHit_Base & CMSModHit_Base::operator= (const CMSModHit_Base &) CMSModSpec::CMSModSpec (void) CMSModSpec::~CMSModSpec (void) CMSModSpec::CMSModSpec (const CMSModSpec &value) CMSModSpec & CMSModSpec::operator= (const CMSModSpec &value) CMSModSpec_Base::CMSModSpec_Base (void) virtual CMSModSpec_Base::~CMSModSpec_Base (void) CMSModSpec_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSModSpec_Base::IsSetMod (void) const what is the mod Check if a value has been assigned to Mod data member. More...
bool CMSModSpec_Base::CanGetMod (void) const Check if it is safe to call GetMod method. More...
void CMSModSpec_Base::ResetMod (void) Reset Mod data member. More...
TMod CMSModSpec_Base::GetMod (void) const Get the Mod member data. More...
void CMSModSpec_Base::SetMod (TMod value) Assign a value to Mod data member. More...
TMod & CMSModSpec_Base::SetMod (void) Assign a value to Mod data member. More...
bool CMSModSpec_Base::IsSetType (void) const modification type Check if a value has been assigned to Type data member. More...
bool CMSModSpec_Base::CanGetType (void) const Check if it is safe to call GetType method. More...
void CMSModSpec_Base::ResetType (void) Reset Type data member. More...
TType CMSModSpec_Base::GetType (void) const Get the Type member data. More...
void CMSModSpec_Base::SetType (TType value) Assign a value to Type data member. More...
TType & CMSModSpec_Base::SetType (void) Assign a value to Type data member. More...
bool CMSModSpec_Base::IsSetName (void) const friendly name of mod Check if a value has been assigned to Name data member. More...
bool CMSModSpec_Base::CanGetName (void) const Check if it is safe to call GetName method. More...
void CMSModSpec_Base::ResetName (void) Reset Name data member. More...
const TName & CMSModSpec_Base::GetName (void) const Get the Name member data. More...
void CMSModSpec_Base::SetName (const TName &value) Assign a value to Name data member. More...
void CMSModSpec_Base::SetName (TName &&value) TName & CMSModSpec_Base::SetName (void) Assign a value to Name data member. More...
bool CMSModSpec_Base::IsSetMonomass (void) const monoisotopic mass Check if a value has been assigned to Monomass data member. More...
bool CMSModSpec_Base::CanGetMonomass (void) const Check if it is safe to call GetMonomass method. More...
void CMSModSpec_Base::ResetMonomass (void) Reset Monomass data member. More...
TMonomass CMSModSpec_Base::GetMonomass (void) const Get the Monomass member data. More...
void CMSModSpec_Base::SetMonomass (TMonomass value) Assign a value to Monomass data member. More...
TMonomass & CMSModSpec_Base::SetMonomass (void) Assign a value to Monomass data member. More...
bool CMSModSpec_Base::IsSetAveragemass (void) const average mass Check if a value has been assigned to Averagemass data member. More...
bool CMSModSpec_Base::CanGetAveragemass (void) const Check if it is safe to call GetAveragemass method. More...
void CMSModSpec_Base::ResetAveragemass (void) Reset Averagemass data member. More...
TAveragemass CMSModSpec_Base::GetAveragemass (void) const Get the Averagemass member data. More...
void CMSModSpec_Base::SetAveragemass (TAveragemass value) Assign a value to Averagemass data member. More...
TAveragemass & CMSModSpec_Base::SetAveragemass (void) Assign a value to Averagemass data member. More...
bool CMSModSpec_Base::IsSetN15mass (void) const monoisotopic n15 mass Check if a value has been assigned to N15mass data member. More...
bool CMSModSpec_Base::CanGetN15mass (void) const Check if it is safe to call GetN15mass method. More...
void CMSModSpec_Base::ResetN15mass (void) Reset N15mass data member. More...
TN15mass CMSModSpec_Base::GetN15mass (void) const Get the N15mass member data. More...
void CMSModSpec_Base::SetN15mass (TN15mass value) Assign a value to N15mass data member. More...
TN15mass & CMSModSpec_Base::SetN15mass (void) Assign a value to N15mass data member. More...
bool CMSModSpec_Base::IsSetResidues (void) const residues to apply mod to Check if a value has been assigned to Residues data member. More...
bool CMSModSpec_Base::CanGetResidues (void) const Check if it is safe to call GetResidues method. More...
void CMSModSpec_Base::ResetResidues (void) Reset Residues data member. More...
const TResidues & CMSModSpec_Base::GetResidues (void) const Get the Residues member data. More...
TResidues & CMSModSpec_Base::SetResidues (void) Assign a value to Residues data member. More...
bool CMSModSpec_Base::IsSetNeutralloss (void) const loss after precursor mass determination Check if a value has been assigned to Neutralloss data member. More...
bool CMSModSpec_Base::CanGetNeutralloss (void) const Check if it is safe to call GetNeutralloss method. More...
void CMSModSpec_Base::ResetNeutralloss (void) Reset Neutralloss data member. More...
const TNeutralloss & CMSModSpec_Base::GetNeutralloss (void) const Get the Neutralloss member data. More...
void CMSModSpec_Base::SetNeutralloss (TNeutralloss &value) Assign a value to Neutralloss data member. More...
TNeutralloss & CMSModSpec_Base::SetNeutralloss (void) Assign a value to Neutralloss data member. More...
bool CMSModSpec_Base::IsSetUnimod (void) const the equivalent Unimod Accession number Check if a value has been assigned to Unimod data member. More...
bool CMSModSpec_Base::CanGetUnimod (void) const Check if it is safe to call GetUnimod method. More...
void CMSModSpec_Base::ResetUnimod (void) Reset Unimod data member. More...
TUnimod CMSModSpec_Base::GetUnimod (void) const Get the Unimod member data. More...
void CMSModSpec_Base::SetUnimod (TUnimod value) Assign a value to Unimod data member. More...
TUnimod & CMSModSpec_Base::SetUnimod (void) Assign a value to Unimod data member. More...
bool CMSModSpec_Base::IsSetPsi_ms (void) const the PSI-MS equivalent name Check if a value has been assigned to Psi_ms data member. More...
bool CMSModSpec_Base::CanGetPsi_ms (void) const Check if it is safe to call GetPsi_ms method. More...
void CMSModSpec_Base::ResetPsi_ms (void) Reset Psi_ms data member. More...
const TPsi_ms & CMSModSpec_Base::GetPsi_ms (void) const Get the Psi_ms member data. More...
void CMSModSpec_Base::SetPsi_ms (const TPsi_ms &value) Assign a value to Psi_ms data member. More...
void CMSModSpec_Base::SetPsi_ms (TPsi_ms &&value) TPsi_ms & CMSModSpec_Base::SetPsi_ms (void) Assign a value to Psi_ms data member. More...
virtual void CMSModSpec_Base::Reset (void) Reset the whole object. More...
CMSModSpec_Base::CMSModSpec_Base (const CMSModSpec_Base &) CMSModSpec_Base & CMSModSpec_Base::operator= (const CMSModSpec_Base &) CMSModSpecSet_Base::CMSModSpecSet_Base (void) virtual CMSModSpecSet_Base::~CMSModSpecSet_Base (void) CMSModSpecSet_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSModSpecSet_Base::IsSet (void) const Check if a value has been assigned to data member. More...
bool CMSModSpecSet_Base::CanGet (void) const Check if it is safe to call Get method. More...
void CMSModSpecSet_Base::Reset (void) Reset data member. More...
const Tdata & CMSModSpecSet_Base::Get (void) const Get the member data. More...
Tdata & CMSModSpecSet_Base::Set (void) Assign a value to data member. More...
CMSModSpecSet_Base::operator const Tdata & (void) const Conversion operator to 'const Tdata' type. More...
CMSModSpecSet_Base::operator Tdata & (void) Conversion operator to 'Tdata' type. More...
CMSModSpecSet_Base::CMSModSpecSet_Base (const CMSModSpecSet_Base &) CMSModSpecSet_Base & CMSModSpecSet_Base::operator= (const CMSModSpecSet_Base &) CMSMZHit::CMSMZHit (void) CMSMZHit::~CMSMZHit (void) CMSMZHit::CMSMZHit (const CMSMZHit &value) CMSMZHit & CMSMZHit::operator= (const CMSMZHit &value) CMSMZHit_Base::CMSMZHit_Base (void) virtual CMSMZHit_Base::~CMSMZHit_Base (void) CMSMZHit_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSMZHit_Base::IsSetIon (void) const ion type, e.g. More...
bool CMSMZHit_Base::CanGetIon (void) const Check if it is safe to call GetIon method. More...
void CMSMZHit_Base::ResetIon (void) Reset Ion data member. More...
TIon CMSMZHit_Base::GetIon (void) const Get the Ion member data. More...
void CMSMZHit_Base::SetIon (TIon value) Assign a value to Ion data member. More...
TIon & CMSMZHit_Base::SetIon (void) Assign a value to Ion data member. More...
bool CMSMZHit_Base::IsSetCharge (void) const ion charge Check if a value has been assigned to Charge data member. More...
bool CMSMZHit_Base::CanGetCharge (void) const Check if it is safe to call GetCharge method. More...
void CMSMZHit_Base::ResetCharge (void) Reset Charge data member. More...
TCharge CMSMZHit_Base::GetCharge (void) const Get the Charge member data. More...
void CMSMZHit_Base::SetCharge (TCharge value) Assign a value to Charge data member. More...
TCharge & CMSMZHit_Base::SetCharge (void) Assign a value to Charge data member. More...
bool CMSMZHit_Base::IsSetNumber (void) const the sequential number of the ion Check if a value has been assigned to Number data member. More...
bool CMSMZHit_Base::CanGetNumber (void) const Check if it is safe to call GetNumber method. More...
void CMSMZHit_Base::ResetNumber (void) Reset Number data member. More...
TNumber CMSMZHit_Base::GetNumber (void) const Get the Number member data. More...
void CMSMZHit_Base::SetNumber (TNumber value) Assign a value to Number data member. More...
TNumber & CMSMZHit_Base::SetNumber (void) Assign a value to Number data member. More...
bool CMSMZHit_Base::IsSetMz (void) const scaled m/z value in Da Check if a value has been assigned to Mz data member. More...
bool CMSMZHit_Base::CanGetMz (void) const Check if it is safe to call GetMz method. More...
void CMSMZHit_Base::ResetMz (void) Reset Mz data member. More...
TMz CMSMZHit_Base::GetMz (void) const Get the Mz member data. More...
void CMSMZHit_Base::SetMz (TMz value) Assign a value to Mz data member. More...
TMz & CMSMZHit_Base::SetMz (void) Assign a value to Mz data member. More...
bool CMSMZHit_Base::IsSetIndex (void) const the index of the peak in the original spectrum Check if a value has been assigned to Index data member. More...
bool CMSMZHit_Base::CanGetIndex (void) const Check if it is safe to call GetIndex method. More...
void CMSMZHit_Base::ResetIndex (void) Reset Index data member. More...
TIndex CMSMZHit_Base::GetIndex (void) const Get the Index member data. More...
void CMSMZHit_Base::SetIndex (TIndex value) Assign a value to Index data member. More...
TIndex & CMSMZHit_Base::SetIndex (void) Assign a value to Index data member. More...
bool CMSMZHit_Base::IsSetMoreion (void) const more information about the ion type Check if a value has been assigned to Moreion data member. More...
bool CMSMZHit_Base::CanGetMoreion (void) const Check if it is safe to call GetMoreion method. More...
void CMSMZHit_Base::ResetMoreion (void) Reset Moreion data member. More...
const TMoreion & CMSMZHit_Base::GetMoreion (void) const Get the Moreion member data. More...
void CMSMZHit_Base::SetMoreion (TMoreion &value) Assign a value to Moreion data member. More...
TMoreion & CMSMZHit_Base::SetMoreion (void) Assign a value to Moreion data member. More...
bool CMSMZHit_Base::IsSetAnnotation (void) const annotations on the ion Check if a value has been assigned to Annotation data member. More...
bool CMSMZHit_Base::CanGetAnnotation (void) const Check if it is safe to call GetAnnotation method. More...
void CMSMZHit_Base::ResetAnnotation (void) Reset Annotation data member. More...
const TAnnotation & CMSMZHit_Base::GetAnnotation (void) const Get the Annotation member data. More...
void CMSMZHit_Base::SetAnnotation (TAnnotation &value) Assign a value to Annotation data member. More...
TAnnotation & CMSMZHit_Base::SetAnnotation (void) Assign a value to Annotation data member. More...
virtual void CMSMZHit_Base::Reset (void) Reset the whole object. More...
CMSMZHit_Base::CMSMZHit_Base (const CMSMZHit_Base &) CMSMZHit_Base & CMSMZHit_Base::operator= (const CMSMZHit_Base &) CMSOutFile::CMSOutFile (void) CMSOutFile::~CMSOutFile (void) CMSOutFile::CMSOutFile (const CMSOutFile &value) CMSOutFile & CMSOutFile::operator= (const CMSOutFile &value) CMSOutFile_Base::CMSOutFile_Base (void) virtual CMSOutFile_Base::~CMSOutFile_Base (void) CMSOutFile_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSOutFile_Base::IsSetOutfile (void) const output file name Check if a value has been assigned to Outfile data member. More...
bool CMSOutFile_Base::CanGetOutfile (void) const Check if it is safe to call GetOutfile method. More...
void CMSOutFile_Base::ResetOutfile (void) Reset Outfile data member. More...
const TOutfile & CMSOutFile_Base::GetOutfile (void) const Get the Outfile member data. More...
void CMSOutFile_Base::SetOutfile (const TOutfile &value) Assign a value to Outfile data member. More...
void CMSOutFile_Base::SetOutfile (TOutfile &&value) TOutfile & CMSOutFile_Base::SetOutfile (void) Assign a value to Outfile data member. More...
bool CMSOutFile_Base::IsSetOutfiletype (void) const output file type Check if a value has been assigned to Outfiletype data member. More...
bool CMSOutFile_Base::CanGetOutfiletype (void) const Check if it is safe to call GetOutfiletype method. More...
void CMSOutFile_Base::ResetOutfiletype (void) Reset Outfiletype data member. More...
TOutfiletype CMSOutFile_Base::GetOutfiletype (void) const Get the Outfiletype member data. More...
void CMSOutFile_Base::SetOutfiletype (TOutfiletype value) Assign a value to Outfiletype data member. More...
TOutfiletype & CMSOutFile_Base::SetOutfiletype (void) Assign a value to Outfiletype data member. More...
bool CMSOutFile_Base::IsSetIncluderequest (void) const should the output include the request? Check if a value has been assigned to Includerequest data member. More...
bool CMSOutFile_Base::CanGetIncluderequest (void) const Check if it is safe to call GetIncluderequest method. More...
void CMSOutFile_Base::ResetIncluderequest (void) Reset Includerequest data member. More...
TIncluderequest CMSOutFile_Base::GetIncluderequest (void) const Get the Includerequest member data. More...
void CMSOutFile_Base::SetIncluderequest (TIncluderequest value) Assign a value to Includerequest data member. More...
TIncluderequest & CMSOutFile_Base::SetIncluderequest (void) Assign a value to Includerequest data member. More...
virtual void CMSOutFile_Base::Reset (void) Reset the whole object. More...
CMSOutFile_Base::CMSOutFile_Base (const CMSOutFile_Base &) CMSOutFile_Base & CMSOutFile_Base::operator= (const CMSOutFile_Base &) CMSPepHit::CMSPepHit (void) CMSPepHit::~CMSPepHit (void) CMSPepHit::CMSPepHit (const CMSPepHit &value) CMSPepHit & CMSPepHit::operator= (const CMSPepHit &value) CMSPepHit_Base::CMSPepHit_Base (void) virtual CMSPepHit_Base::~CMSPepHit_Base (void) CMSPepHit_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSPepHit_Base::IsSetStart (void) const start position (inclusive) in sequence Check if a value has been assigned to Start data member. More...
bool CMSPepHit_Base::CanGetStart (void) const Check if it is safe to call GetStart method. More...
void CMSPepHit_Base::ResetStart (void) Reset Start data member. More...
TStart CMSPepHit_Base::GetStart (void) const Get the Start member data. More...
void CMSPepHit_Base::SetStart (TStart value) Assign a value to Start data member. More...
TStart & CMSPepHit_Base::SetStart (void) Assign a value to Start data member. More...
bool CMSPepHit_Base::IsSetStop (void) const stop position (inclusive) in sequence Check if a value has been assigned to Stop data member. More...
bool CMSPepHit_Base::CanGetStop (void) const Check if it is safe to call GetStop method. More...
void CMSPepHit_Base::ResetStop (void) Reset Stop data member. More...
TStop CMSPepHit_Base::GetStop (void) const Get the Stop member data. More...
void CMSPepHit_Base::SetStop (TStop value) Assign a value to Stop data member. More...
TStop & CMSPepHit_Base::SetStop (void) Assign a value to Stop data member. More...
bool CMSPepHit_Base::IsSetGi (void) const genbank identifier Check if a value has been assigned to Gi data member. More...
bool CMSPepHit_Base::CanGetGi (void) const Check if it is safe to call GetGi method. More...
void CMSPepHit_Base::ResetGi (void) Reset Gi data member. More...
TGi CMSPepHit_Base::GetGi (void) const Get the Gi member data. More...
void CMSPepHit_Base::SetGi (TGi value) Assign a value to Gi data member. More...
TGi & CMSPepHit_Base::SetGi (void) Assign a value to Gi data member. More...
bool CMSPepHit_Base::IsSetAccession (void) const sequence accession Check if a value has been assigned to Accession data member. More...
bool CMSPepHit_Base::CanGetAccession (void) const Check if it is safe to call GetAccession method. More...
void CMSPepHit_Base::ResetAccession (void) Reset Accession data member. More...
const TAccession & CMSPepHit_Base::GetAccession (void) const Get the Accession member data. More...
void CMSPepHit_Base::SetAccession (const TAccession &value) Assign a value to Accession data member. More...
void CMSPepHit_Base::SetAccession (TAccession &&value) TAccession & CMSPepHit_Base::SetAccession (void) Assign a value to Accession data member. More...
bool CMSPepHit_Base::IsSetDefline (void) const sequence description Check if a value has been assigned to Defline data member. More...
bool CMSPepHit_Base::CanGetDefline (void) const Check if it is safe to call GetDefline method. More...
void CMSPepHit_Base::ResetDefline (void) Reset Defline data member. More...
const TDefline & CMSPepHit_Base::GetDefline (void) const Get the Defline member data. More...
void CMSPepHit_Base::SetDefline (const TDefline &value) Assign a value to Defline data member. More...
void CMSPepHit_Base::SetDefline (TDefline &&value) TDefline & CMSPepHit_Base::SetDefline (void) Assign a value to Defline data member. More...
bool CMSPepHit_Base::IsSetProtlength (void) const length of protein Check if a value has been assigned to Protlength data member. More...
bool CMSPepHit_Base::CanGetProtlength (void) const Check if it is safe to call GetProtlength method. More...
void CMSPepHit_Base::ResetProtlength (void) Reset Protlength data member. More...
TProtlength CMSPepHit_Base::GetProtlength (void) const Get the Protlength member data. More...
void CMSPepHit_Base::SetProtlength (TProtlength value) Assign a value to Protlength data member. More...
TProtlength & CMSPepHit_Base::SetProtlength (void) Assign a value to Protlength data member. More...
bool CMSPepHit_Base::IsSetOid (void) const blast library oid Check if a value has been assigned to Oid data member. More...
bool CMSPepHit_Base::CanGetOid (void) const Check if it is safe to call GetOid method. More...
void CMSPepHit_Base::ResetOid (void) Reset Oid data member. More...
TOid CMSPepHit_Base::GetOid (void) const Get the Oid member data. More...
void CMSPepHit_Base::SetOid (TOid value) Assign a value to Oid data member. More...
TOid & CMSPepHit_Base::SetOid (void) Assign a value to Oid data member. More...
bool CMSPepHit_Base::IsSetReversed (void) const reversed sequence Check if a value has been assigned to Reversed data member. More...
bool CMSPepHit_Base::CanGetReversed (void) const Check if it is safe to call GetReversed method. More...
void CMSPepHit_Base::ResetReversed (void) Reset Reversed data member. More...
TReversed CMSPepHit_Base::GetReversed (void) const Get the Reversed member data. More...
void CMSPepHit_Base::SetReversed (TReversed value) Assign a value to Reversed data member. More...
TReversed & CMSPepHit_Base::SetReversed (void) Assign a value to Reversed data member. More...
bool CMSPepHit_Base::IsSetPepstart (void) const AA before the peptide Check if a value has been assigned to Pepstart data member. More...
bool CMSPepHit_Base::CanGetPepstart (void) const Check if it is safe to call GetPepstart method. More...
void CMSPepHit_Base::ResetPepstart (void) Reset Pepstart data member. More...
const TPepstart & CMSPepHit_Base::GetPepstart (void) const Get the Pepstart member data. More...
void CMSPepHit_Base::SetPepstart (const TPepstart &value) Assign a value to Pepstart data member. More...
void CMSPepHit_Base::SetPepstart (TPepstart &&value) TPepstart & CMSPepHit_Base::SetPepstart (void) Assign a value to Pepstart data member. More...
bool CMSPepHit_Base::IsSetPepstop (void) const AA after the peptide Check if a value has been assigned to Pepstop data member. More...
bool CMSPepHit_Base::CanGetPepstop (void) const Check if it is safe to call GetPepstop method. More...
void CMSPepHit_Base::ResetPepstop (void) Reset Pepstop data member. More...
const TPepstop & CMSPepHit_Base::GetPepstop (void) const Get the Pepstop member data. More...
void CMSPepHit_Base::SetPepstop (const TPepstop &value) Assign a value to Pepstop data member. More...
void CMSPepHit_Base::SetPepstop (TPepstop &&value) TPepstop & CMSPepHit_Base::SetPepstop (void) Assign a value to Pepstop data member. More...
virtual void CMSPepHit_Base::Reset (void) Reset the whole object. More...
CMSPepHit_Base::CMSPepHit_Base (const CMSPepHit_Base &) CMSPepHit_Base & CMSPepHit_Base::operator= (const CMSPepHit_Base &) CMSRequest_Base::CMSRequest_Base (void) virtual CMSRequest_Base::~CMSRequest_Base (void) CMSRequest_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSRequest_Base::IsSetSpectra (void) const the set of spectra Check if a value has been assigned to Spectra data member. More...
bool CMSRequest_Base::CanGetSpectra (void) const Check if it is safe to call GetSpectra method. More...
void CMSRequest_Base::ResetSpectra (void) Reset Spectra data member. More...
const TSpectra & CMSRequest_Base::GetSpectra (void) const Get the Spectra member data. More...
void CMSRequest_Base::SetSpectra (TSpectra &value) Assign a value to Spectra data member. More...
TSpectra & CMSRequest_Base::SetSpectra (void) Assign a value to Spectra data member. More...
bool CMSRequest_Base::IsSetSettings (void) const the search settings Check if a value has been assigned to Settings data member. More...
bool CMSRequest_Base::CanGetSettings (void) const Check if it is safe to call GetSettings method. More...
void CMSRequest_Base::ResetSettings (void) Reset Settings data member. More...
const TSettings & CMSRequest_Base::GetSettings (void) const Get the Settings member data. More...
void CMSRequest_Base::SetSettings (TSettings &value) Assign a value to Settings data member. More...
TSettings & CMSRequest_Base::SetSettings (void) Assign a value to Settings data member. More...
bool CMSRequest_Base::IsSetRid (void) const request id Check if a value has been assigned to Rid data member. More...
bool CMSRequest_Base::CanGetRid (void) const Check if it is safe to call GetRid method. More...
void CMSRequest_Base::ResetRid (void) Reset Rid data member. More...
const TRid & CMSRequest_Base::GetRid (void) const Get the Rid member data. More...
void CMSRequest_Base::SetRid (const TRid &value) Assign a value to Rid data member. More...
void CMSRequest_Base::SetRid (TRid &&value) TRid & CMSRequest_Base::SetRid (void) Assign a value to Rid data member. More...
bool CMSRequest_Base::IsSetMoresettings (void) const additional search runs Check if a value has been assigned to Moresettings data member. More...
bool CMSRequest_Base::CanGetMoresettings (void) const Check if it is safe to call GetMoresettings method. More...
void CMSRequest_Base::ResetMoresettings (void) Reset Moresettings data member. More...
const TMoresettings & CMSRequest_Base::GetMoresettings (void) const Get the Moresettings member data. More...
void CMSRequest_Base::SetMoresettings (TMoresettings &value) Assign a value to Moresettings data member. More...
TMoresettings & CMSRequest_Base::SetMoresettings (void) Assign a value to Moresettings data member. More...
bool CMSRequest_Base::IsSetModset (void) const list of mods that can be used in search Check if a value has been assigned to Modset data member. More...
bool CMSRequest_Base::CanGetModset (void) const Check if it is safe to call GetModset method. More...
void CMSRequest_Base::ResetModset (void) Reset Modset data member. More...
const TModset & CMSRequest_Base::GetModset (void) const Get the Modset member data. More...
void CMSRequest_Base::SetModset (TModset &value) Assign a value to Modset data member. More...
TModset & CMSRequest_Base::SetModset (void) Assign a value to Modset data member. More...
virtual void CMSRequest_Base::Reset (void) Reset the whole object. More...
CMSRequest_Base::CMSRequest_Base (const CMSRequest_Base &) CMSRequest_Base & CMSRequest_Base::operator= (const CMSRequest_Base &) CMSResponse_Base::CMSResponse_Base (void) virtual CMSResponse_Base::~CMSResponse_Base (void) CMSResponse_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSResponse_Base::IsSetHitsets (void) const hits grouped by spectrum Check if a value has been assigned to Hitsets data member. More...
bool CMSResponse_Base::CanGetHitsets (void) const Check if it is safe to call GetHitsets method. More...
void CMSResponse_Base::ResetHitsets (void) Reset Hitsets data member. More...
const THitsets & CMSResponse_Base::GetHitsets (void) const Get the Hitsets member data. More...
THitsets & CMSResponse_Base::SetHitsets (void) Assign a value to Hitsets data member. More...
bool CMSResponse_Base::IsSetScale (void) const scale to change m/z float to integer Check if a value has been assigned to Scale data member. More...
bool CMSResponse_Base::CanGetScale (void) const Check if it is safe to call GetScale method. More...
void CMSResponse_Base::ResetScale (void) Reset Scale data member. More...
void CMSResponse_Base::SetDefaultScale (void) Assign default value to Scale data member. More...
TScale CMSResponse_Base::GetScale (void) const Get the Scale member data. More...
void CMSResponse_Base::SetScale (TScale value) Assign a value to Scale data member. More...
TScale & CMSResponse_Base::SetScale (void) Assign a value to Scale data member. More...
bool CMSResponse_Base::IsSetRid (void) const request id Check if a value has been assigned to Rid data member. More...
bool CMSResponse_Base::CanGetRid (void) const Check if it is safe to call GetRid method. More...
void CMSResponse_Base::ResetRid (void) Reset Rid data member. More...
const TRid & CMSResponse_Base::GetRid (void) const Get the Rid member data. More...
void CMSResponse_Base::SetRid (const TRid &value) Assign a value to Rid data member. More...
void CMSResponse_Base::SetRid (TRid &&value) TRid & CMSResponse_Base::SetRid (void) Assign a value to Rid data member. More...
bool CMSResponse_Base::IsSetError (void) const error response Check if a value has been assigned to Error data member. More...
bool CMSResponse_Base::CanGetError (void) const Check if it is safe to call GetError method. More...
void CMSResponse_Base::ResetError (void) Reset Error data member. More...
TError CMSResponse_Base::GetError (void) const Get the Error member data. More...
void CMSResponse_Base::SetError (TError value) Assign a value to Error data member. More...
TError & CMSResponse_Base::SetError (void) Assign a value to Error data member. More...
bool CMSResponse_Base::IsSetVersion (void) const version of OMSSA Check if a value has been assigned to Version data member. More...
bool CMSResponse_Base::CanGetVersion (void) const Check if it is safe to call GetVersion method. More...
void CMSResponse_Base::ResetVersion (void) Reset Version data member. More...
const TVersion & CMSResponse_Base::GetVersion (void) const Get the Version member data. More...
void CMSResponse_Base::SetVersion (const TVersion &value) Assign a value to Version data member. More...
void CMSResponse_Base::SetVersion (TVersion &&value) TVersion & CMSResponse_Base::SetVersion (void) Assign a value to Version data member. More...
bool CMSResponse_Base::IsSetEmail (void) const email address for notification Check if a value has been assigned to Email data member. More...
bool CMSResponse_Base::CanGetEmail (void) const Check if it is safe to call GetEmail method. More...
void CMSResponse_Base::ResetEmail (void) Reset Email data member. More...
const TEmail & CMSResponse_Base::GetEmail (void) const Get the Email member data. More...
void CMSResponse_Base::SetEmail (const TEmail &value) Assign a value to Email data member. More...
void CMSResponse_Base::SetEmail (TEmail &&value) TEmail & CMSResponse_Base::SetEmail (void) Assign a value to Email data member. More...
bool CMSResponse_Base::IsSetDbversion (void) const version of db searched (usually size) Check if a value has been assigned to Dbversion data member. More...
bool CMSResponse_Base::CanGetDbversion (void) const Check if it is safe to call GetDbversion method. More...
void CMSResponse_Base::ResetDbversion (void) Reset Dbversion data member. More...
TDbversion CMSResponse_Base::GetDbversion (void) const Get the Dbversion member data. More...
void CMSResponse_Base::SetDbversion (TDbversion value) Assign a value to Dbversion data member. More...
TDbversion & CMSResponse_Base::SetDbversion (void) Assign a value to Dbversion data member. More...
bool CMSResponse_Base::IsSetBioseqs (void) const sequences found in search Check if a value has been assigned to Bioseqs data member. More...
bool CMSResponse_Base::CanGetBioseqs (void) const Check if it is safe to call GetBioseqs method. More...
void CMSResponse_Base::ResetBioseqs (void) Reset Bioseqs data member. More...
const TBioseqs & CMSResponse_Base::GetBioseqs (void) const Get the Bioseqs member data. More...
void CMSResponse_Base::SetBioseqs (TBioseqs &value) Assign a value to Bioseqs data member. More...
TBioseqs & CMSResponse_Base::SetBioseqs (void) Assign a value to Bioseqs data member. More...
virtual void CMSResponse_Base::Reset (void) Reset the whole object. More...
CMSResponse_Base::CMSResponse_Base (const CMSResponse_Base &) CMSResponse_Base & CMSResponse_Base::operator= (const CMSResponse_Base &) CMSScoreSet::CMSScoreSet (void) CMSScoreSet::~CMSScoreSet (void) CMSScoreSet::CMSScoreSet (const CMSScoreSet &value) CMSScoreSet & CMSScoreSet::operator= (const CMSScoreSet &value) CMSScoreSet_Base::CMSScoreSet_Base (void) virtual CMSScoreSet_Base::~CMSScoreSet_Base (void) CMSScoreSet_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSScoreSet_Base::IsSetName (void) const Check if a value has been assigned to Name data member. More...
bool CMSScoreSet_Base::CanGetName (void) const Check if it is safe to call GetName method. More...
void CMSScoreSet_Base::ResetName (void) Reset Name data member. More...
const TName & CMSScoreSet_Base::GetName (void) const Get the Name member data. More...
void CMSScoreSet_Base::SetName (const TName &value) Assign a value to Name data member. More...
void CMSScoreSet_Base::SetName (TName &&value) TName & CMSScoreSet_Base::SetName (void) Assign a value to Name data member. More...
bool CMSScoreSet_Base::IsSetValue (void) const Check if a value has been assigned to Value data member. More...
bool CMSScoreSet_Base::CanGetValue (void) const Check if it is safe to call GetValue method. More...
void CMSScoreSet_Base::ResetValue (void) Reset Value data member. More...
TValue CMSScoreSet_Base::GetValue (void) const Get the Value member data. More...
void CMSScoreSet_Base::SetValue (TValue value) Assign a value to Value data member. More...
TValue & CMSScoreSet_Base::SetValue (void) Assign a value to Value data member. More...
virtual void CMSScoreSet_Base::Reset (void) Reset the whole object. More...
CMSScoreSet_Base::CMSScoreSet_Base (const CMSScoreSet_Base &) CMSScoreSet_Base & CMSScoreSet_Base::operator= (const CMSScoreSet_Base &) CMSSearch_Base::CMSSearch_Base (void) virtual CMSSearch_Base::~CMSSearch_Base (void) CMSSearch_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSSearch_Base::IsSetRequest (void) const Check if a value has been assigned to Request data member. More...
bool CMSSearch_Base::CanGetRequest (void) const Check if it is safe to call GetRequest method. More...
void CMSSearch_Base::ResetRequest (void) Reset Request data member. More...
const TRequest & CMSSearch_Base::GetRequest (void) const Get the Request member data. More...
TRequest & CMSSearch_Base::SetRequest (void) Assign a value to Request data member. More...
bool CMSSearch_Base::IsSetResponse (void) const Check if a value has been assigned to Response data member. More...
bool CMSSearch_Base::CanGetResponse (void) const Check if it is safe to call GetResponse method. More...
void CMSSearch_Base::ResetResponse (void) Reset Response data member. More...
const TResponse & CMSSearch_Base::GetResponse (void) const Get the Response member data. More...
TResponse & CMSSearch_Base::SetResponse (void) Assign a value to Response data member. More...
virtual void CMSSearch_Base::Reset (void) Reset the whole object. More...
CMSSearch_Base::CMSSearch_Base (const CMSSearch_Base &) CMSSearch_Base & CMSSearch_Base::operator= (const CMSSearch_Base &) CMSSearchSettings_Base::CMSSearchSettings_Base (void) virtual CMSSearchSettings_Base::~CMSSearchSettings_Base (void) CMSSearchSettings_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSSearchSettings_Base::IsSetPrecursorsearchtype (void) const average or monoisotopic? Check if a value has been assigned to Precursorsearchtype data member. More...
bool CMSSearchSettings_Base::CanGetPrecursorsearchtype (void) const Check if it is safe to call GetPrecursorsearchtype method. More...
void CMSSearchSettings_Base::ResetPrecursorsearchtype (void) Reset Precursorsearchtype data member. More...
TPrecursorsearchtype CMSSearchSettings_Base::GetPrecursorsearchtype (void) const Get the Precursorsearchtype member data. More...
void CMSSearchSettings_Base::SetPrecursorsearchtype (TPrecursorsearchtype value) Assign a value to Precursorsearchtype data member. More...
TPrecursorsearchtype & CMSSearchSettings_Base::SetPrecursorsearchtype (void) Assign a value to Precursorsearchtype data member. More...
bool CMSSearchSettings_Base::IsSetProductsearchtype (void) const average or monoisotopic? Check if a value has been assigned to Productsearchtype data member. More...
bool CMSSearchSettings_Base::CanGetProductsearchtype (void) const Check if it is safe to call GetProductsearchtype method. More...
void CMSSearchSettings_Base::ResetProductsearchtype (void) Reset Productsearchtype data member. More...
TProductsearchtype CMSSearchSettings_Base::GetProductsearchtype (void) const Get the Productsearchtype member data. More...
void CMSSearchSettings_Base::SetProductsearchtype (TProductsearchtype value) Assign a value to Productsearchtype data member. More...
TProductsearchtype & CMSSearchSettings_Base::SetProductsearchtype (void) Assign a value to Productsearchtype data member. More...
bool CMSSearchSettings_Base::IsSetIonstosearch (void) const which ions to search? Check if a value has been assigned to Ionstosearch data member. More...
bool CMSSearchSettings_Base::CanGetIonstosearch (void) const Check if it is safe to call GetIonstosearch method. More...
void CMSSearchSettings_Base::ResetIonstosearch (void) Reset Ionstosearch data member. More...
const TIonstosearch & CMSSearchSettings_Base::GetIonstosearch (void) const Get the Ionstosearch member data. More...
TIonstosearch & CMSSearchSettings_Base::SetIonstosearch (void) Assign a value to Ionstosearch data member. More...
bool CMSSearchSettings_Base::IsSetPeptol (void) const peptide mass tolerance Check if a value has been assigned to Peptol data member. More...
bool CMSSearchSettings_Base::CanGetPeptol (void) const Check if it is safe to call GetPeptol method. More...
void CMSSearchSettings_Base::ResetPeptol (void) Reset Peptol data member. More...
TPeptol CMSSearchSettings_Base::GetPeptol (void) const Get the Peptol member data. More...
void CMSSearchSettings_Base::SetPeptol (TPeptol value) Assign a value to Peptol data member. More...
TPeptol & CMSSearchSettings_Base::SetPeptol (void) Assign a value to Peptol data member. More...
bool CMSSearchSettings_Base::IsSetMsmstol (void) const msms mass tolerance Check if a value has been assigned to Msmstol data member. More...
bool CMSSearchSettings_Base::CanGetMsmstol (void) const Check if it is safe to call GetMsmstol method. More...
void CMSSearchSettings_Base::ResetMsmstol (void) Reset Msmstol data member. More...
TMsmstol CMSSearchSettings_Base::GetMsmstol (void) const Get the Msmstol member data. More...
void CMSSearchSettings_Base::SetMsmstol (TMsmstol value) Assign a value to Msmstol data member. More...
TMsmstol & CMSSearchSettings_Base::SetMsmstol (void) Assign a value to Msmstol data member. More...
bool CMSSearchSettings_Base::IsSetZdep (void) const what is the charge dependence of the mass tolerance? Check if a value has been assigned to Zdep data member. More...
bool CMSSearchSettings_Base::CanGetZdep (void) const Check if it is safe to call GetZdep method. More...
void CMSSearchSettings_Base::ResetZdep (void) Reset Zdep data member. More...
TZdep CMSSearchSettings_Base::GetZdep (void) const Get the Zdep member data. More...
void CMSSearchSettings_Base::SetZdep (TZdep value) Assign a value to Zdep data member. More...
TZdep & CMSSearchSettings_Base::SetZdep (void) Assign a value to Zdep data member. More...
bool CMSSearchSettings_Base::IsSetCutoff (void) const evalue cutoff next 3 fields define intensity fraction below which peaks will be discard Check if a value has been assigned to Cutoff data member. More...
bool CMSSearchSettings_Base::CanGetCutoff (void) const Check if it is safe to call GetCutoff method. More...
void CMSSearchSettings_Base::ResetCutoff (void) Reset Cutoff data member. More...
TCutoff CMSSearchSettings_Base::GetCutoff (void) const Get the Cutoff member data. More...
void CMSSearchSettings_Base::SetCutoff (TCutoff value) Assign a value to Cutoff data member. More...
TCutoff & CMSSearchSettings_Base::SetCutoff (void) Assign a value to Cutoff data member. More...
bool CMSSearchSettings_Base::IsSetCutlo (void) const the start of the cutoff, fraction of most intense peak Check if a value has been assigned to Cutlo data member. More...
bool CMSSearchSettings_Base::CanGetCutlo (void) const Check if it is safe to call GetCutlo method. More...
void CMSSearchSettings_Base::ResetCutlo (void) Reset Cutlo data member. More...
TCutlo CMSSearchSettings_Base::GetCutlo (void) const Get the Cutlo member data. More...
void CMSSearchSettings_Base::SetCutlo (TCutlo value) Assign a value to Cutlo data member. More...
TCutlo & CMSSearchSettings_Base::SetCutlo (void) Assign a value to Cutlo data member. More...
bool CMSSearchSettings_Base::IsSetCuthi (void) const the end of the cutoff Check if a value has been assigned to Cuthi data member. More...
bool CMSSearchSettings_Base::CanGetCuthi (void) const Check if it is safe to call GetCuthi method. More...
void CMSSearchSettings_Base::ResetCuthi (void) Reset Cuthi data member. More...
TCuthi CMSSearchSettings_Base::GetCuthi (void) const Get the Cuthi member data. More...
void CMSSearchSettings_Base::SetCuthi (TCuthi value) Assign a value to Cuthi data member. More...
TCuthi & CMSSearchSettings_Base::SetCuthi (void) Assign a value to Cuthi data member. More...
bool CMSSearchSettings_Base::IsSetCutinc (void) const the increment of the cutoff Check if a value has been assigned to Cutinc data member. More...
bool CMSSearchSettings_Base::CanGetCutinc (void) const Check if it is safe to call GetCutinc method. More...
void CMSSearchSettings_Base::ResetCutinc (void) Reset Cutinc data member. More...
TCutinc CMSSearchSettings_Base::GetCutinc (void) const Get the Cutinc member data. More...
void CMSSearchSettings_Base::SetCutinc (TCutinc value) Assign a value to Cutinc data member. More...
TCutinc & CMSSearchSettings_Base::SetCutinc (void) Assign a value to Cutinc data member. More...
bool CMSSearchSettings_Base::IsSetSinglewin (void) const the size of the single charge filtering window Check if a value has been assigned to Singlewin data member. More...
bool CMSSearchSettings_Base::CanGetSinglewin (void) const Check if it is safe to call GetSinglewin method. More...
void CMSSearchSettings_Base::ResetSinglewin (void) Reset Singlewin data member. More...
TSinglewin CMSSearchSettings_Base::GetSinglewin (void) const Get the Singlewin member data. More...
void CMSSearchSettings_Base::SetSinglewin (TSinglewin value) Assign a value to Singlewin data member. More...
TSinglewin & CMSSearchSettings_Base::SetSinglewin (void) Assign a value to Singlewin data member. More...
bool CMSSearchSettings_Base::IsSetDoublewin (void) const the size of the double charge filtering window Check if a value has been assigned to Doublewin data member. More...
bool CMSSearchSettings_Base::CanGetDoublewin (void) const Check if it is safe to call GetDoublewin method. More...
void CMSSearchSettings_Base::ResetDoublewin (void) Reset Doublewin data member. More...
TDoublewin CMSSearchSettings_Base::GetDoublewin (void) const Get the Doublewin member data. More...
void CMSSearchSettings_Base::SetDoublewin (TDoublewin value) Assign a value to Doublewin data member. More...
TDoublewin & CMSSearchSettings_Base::SetDoublewin (void) Assign a value to Doublewin data member. More...
bool CMSSearchSettings_Base::IsSetSinglenum (void) const the number of peaks allowed in the single window Check if a value has been assigned to Singlenum data member. More...
bool CMSSearchSettings_Base::CanGetSinglenum (void) const Check if it is safe to call GetSinglenum method. More...
void CMSSearchSettings_Base::ResetSinglenum (void) Reset Singlenum data member. More...
TSinglenum CMSSearchSettings_Base::GetSinglenum (void) const Get the Singlenum member data. More...
void CMSSearchSettings_Base::SetSinglenum (TSinglenum value) Assign a value to Singlenum data member. More...
TSinglenum & CMSSearchSettings_Base::SetSinglenum (void) Assign a value to Singlenum data member. More...
bool CMSSearchSettings_Base::IsSetDoublenum (void) const the number of peaks allowed in the double window Check if a value has been assigned to Doublenum data member. More...
bool CMSSearchSettings_Base::CanGetDoublenum (void) const Check if it is safe to call GetDoublenum method. More...
void CMSSearchSettings_Base::ResetDoublenum (void) Reset Doublenum data member. More...
TDoublenum CMSSearchSettings_Base::GetDoublenum (void) const Get the Doublenum member data. More...
void CMSSearchSettings_Base::SetDoublenum (TDoublenum value) Assign a value to Doublenum data member. More...
TDoublenum & CMSSearchSettings_Base::SetDoublenum (void) Assign a value to Doublenum data member. More...
bool CMSSearchSettings_Base::IsSetFixed (void) const fixed PTM's Check if a value has been assigned to Fixed data member. More...
bool CMSSearchSettings_Base::CanGetFixed (void) const Check if it is safe to call GetFixed method. More...
void CMSSearchSettings_Base::ResetFixed (void) Reset Fixed data member. More...
const TFixed & CMSSearchSettings_Base::GetFixed (void) const Get the Fixed member data. More...
TFixed & CMSSearchSettings_Base::SetFixed (void) Assign a value to Fixed data member. More...
bool CMSSearchSettings_Base::IsSetVariable (void) const variable PTM's Check if a value has been assigned to Variable data member. More...
bool CMSSearchSettings_Base::CanGetVariable (void) const Check if it is safe to call GetVariable method. More...
void CMSSearchSettings_Base::ResetVariable (void) Reset Variable data member. More...
const TVariable & CMSSearchSettings_Base::GetVariable (void) const Get the Variable member data. More...
TVariable & CMSSearchSettings_Base::SetVariable (void) Assign a value to Variable data member. More...
bool CMSSearchSettings_Base::IsSetEnzyme (void) const digestion enzyme Check if a value has been assigned to Enzyme data member. More...
bool CMSSearchSettings_Base::CanGetEnzyme (void) const Check if it is safe to call GetEnzyme method. More...
void CMSSearchSettings_Base::ResetEnzyme (void) Reset Enzyme data member. More...
TEnzyme CMSSearchSettings_Base::GetEnzyme (void) const Get the Enzyme member data. More...
void CMSSearchSettings_Base::SetEnzyme (TEnzyme value) Assign a value to Enzyme data member. More...
TEnzyme & CMSSearchSettings_Base::SetEnzyme (void) Assign a value to Enzyme data member. More...
bool CMSSearchSettings_Base::IsSetMissedcleave (void) const number of missed cleaves allowed Check if a value has been assigned to Missedcleave data member. More...
bool CMSSearchSettings_Base::CanGetMissedcleave (void) const Check if it is safe to call GetMissedcleave method. More...
void CMSSearchSettings_Base::ResetMissedcleave (void) Reset Missedcleave data member. More...
TMissedcleave CMSSearchSettings_Base::GetMissedcleave (void) const Get the Missedcleave member data. More...
void CMSSearchSettings_Base::SetMissedcleave (TMissedcleave value) Assign a value to Missedcleave data member. More...
TMissedcleave & CMSSearchSettings_Base::SetMissedcleave (void) Assign a value to Missedcleave data member. More...
bool CMSSearchSettings_Base::IsSetHitlistlen (void) const the number of hits kept in memory for a spectrum Check if a value has been assigned to Hitlistlen data member. More...
bool CMSSearchSettings_Base::CanGetHitlistlen (void) const Check if it is safe to call GetHitlistlen method. More...
void CMSSearchSettings_Base::ResetHitlistlen (void) Reset Hitlistlen data member. More...
void CMSSearchSettings_Base::SetDefaultHitlistlen (void) Assign default value to Hitlistlen data member. More...
THitlistlen CMSSearchSettings_Base::GetHitlistlen (void) const Get the Hitlistlen member data. More...
void CMSSearchSettings_Base::SetHitlistlen (THitlistlen value) Assign a value to Hitlistlen data member. More...
THitlistlen & CMSSearchSettings_Base::SetHitlistlen (void) Assign a value to Hitlistlen data member. More...
bool CMSSearchSettings_Base::IsSetDb (void) const sequence set to search, e.g. More...
bool CMSSearchSettings_Base::CanGetDb (void) const Check if it is safe to call GetDb method. More...
void CMSSearchSettings_Base::ResetDb (void) Reset Db data member. More...
const TDb & CMSSearchSettings_Base::GetDb (void) const Get the Db member data. More...
void CMSSearchSettings_Base::SetDb (const TDb &value) Assign a value to Db data member. More...
void CMSSearchSettings_Base::SetDb (TDb &&value) TDb & CMSSearchSettings_Base::SetDb (void) Assign a value to Db data member. More...
bool CMSSearchSettings_Base::IsSetTophitnum (void) const number of m/z to consider in first pass Check if a value has been assigned to Tophitnum data member. More...
bool CMSSearchSettings_Base::CanGetTophitnum (void) const Check if it is safe to call GetTophitnum method. More...
void CMSSearchSettings_Base::ResetTophitnum (void) Reset Tophitnum data member. More...
TTophitnum CMSSearchSettings_Base::GetTophitnum (void) const Get the Tophitnum member data. More...
void CMSSearchSettings_Base::SetTophitnum (TTophitnum value) Assign a value to Tophitnum data member. More...
TTophitnum & CMSSearchSettings_Base::SetTophitnum (void) Assign a value to Tophitnum data member. More...
bool CMSSearchSettings_Base::IsSetMinhit (void) const minimum number of m/z values for a valid hit Check if a value has been assigned to Minhit data member. More...
bool CMSSearchSettings_Base::CanGetMinhit (void) const Check if it is safe to call GetMinhit method. More...
void CMSSearchSettings_Base::ResetMinhit (void) Reset Minhit data member. More...
void CMSSearchSettings_Base::SetDefaultMinhit (void) Assign default value to Minhit data member. More...
TMinhit CMSSearchSettings_Base::GetMinhit (void) const Get the Minhit member data. More...
void CMSSearchSettings_Base::SetMinhit (TMinhit value) Assign a value to Minhit data member. More...
TMinhit & CMSSearchSettings_Base::SetMinhit (void) Assign a value to Minhit data member. More...
bool CMSSearchSettings_Base::IsSetMinspectra (void) const minimum number of m/z for a valid spectra Check if a value has been assigned to Minspectra data member. More...
bool CMSSearchSettings_Base::CanGetMinspectra (void) const Check if it is safe to call GetMinspectra method. More...
void CMSSearchSettings_Base::ResetMinspectra (void) Reset Minspectra data member. More...
void CMSSearchSettings_Base::SetDefaultMinspectra (void) Assign default value to Minspectra data member. More...
TMinspectra CMSSearchSettings_Base::GetMinspectra (void) const Get the Minspectra member data. More...
void CMSSearchSettings_Base::SetMinspectra (TMinspectra value) Assign a value to Minspectra data member. More...
TMinspectra & CMSSearchSettings_Base::SetMinspectra (void) Assign a value to Minspectra data member. More...
bool CMSSearchSettings_Base::IsSetScale (void) const scale for m/z float to integer Check if a value has been assigned to Scale data member. More...
bool CMSSearchSettings_Base::CanGetScale (void) const Check if it is safe to call GetScale method. More...
void CMSSearchSettings_Base::ResetScale (void) Reset Scale data member. More...
void CMSSearchSettings_Base::SetDefaultScale (void) Assign default value to Scale data member. More...
TScale CMSSearchSettings_Base::GetScale (void) const Get the Scale member data. More...
void CMSSearchSettings_Base::SetScale (TScale value) Assign a value to Scale data member. More...
TScale & CMSSearchSettings_Base::SetScale (void) Assign a value to Scale data member. More...
bool CMSSearchSettings_Base::IsSetMaxmods (void) const maximum number of mass ladders per database peptide Check if a value has been assigned to Maxmods data member. More...
bool CMSSearchSettings_Base::CanGetMaxmods (void) const Check if it is safe to call GetMaxmods method. More...
void CMSSearchSettings_Base::ResetMaxmods (void) Reset Maxmods data member. More...
void CMSSearchSettings_Base::SetDefaultMaxmods (void) Assign default value to Maxmods data member. More...
TMaxmods CMSSearchSettings_Base::GetMaxmods (void) const Get the Maxmods member data. More...
void CMSSearchSettings_Base::SetMaxmods (TMaxmods value) Assign a value to Maxmods data member. More...
TMaxmods & CMSSearchSettings_Base::SetMaxmods (void) Assign a value to Maxmods data member. More...
bool CMSSearchSettings_Base::IsSetTaxids (void) const taxa to limit search Check if a value has been assigned to Taxids data member. More...
bool CMSSearchSettings_Base::CanGetTaxids (void) const Check if it is safe to call GetTaxids method. More...
void CMSSearchSettings_Base::ResetTaxids (void) Reset Taxids data member. More...
const TTaxids & CMSSearchSettings_Base::GetTaxids (void) const Get the Taxids member data. More...
TTaxids & CMSSearchSettings_Base::SetTaxids (void) Assign a value to Taxids data member. More...
bool CMSSearchSettings_Base::IsSetChargehandling (void) const how to deal with charges Check if a value has been assigned to Chargehandling data member. More...
bool CMSSearchSettings_Base::CanGetChargehandling (void) const Check if it is safe to call GetChargehandling method. More...
void CMSSearchSettings_Base::ResetChargehandling (void) Reset Chargehandling data member. More...
const TChargehandling & CMSSearchSettings_Base::GetChargehandling (void) const Get the Chargehandling member data. More...
void CMSSearchSettings_Base::SetChargehandling (TChargehandling &value) Assign a value to Chargehandling data member. More...
TChargehandling & CMSSearchSettings_Base::SetChargehandling (void) Assign a value to Chargehandling data member. More...
bool CMSSearchSettings_Base::IsSetUsermods (void) const user defined modifications Check if a value has been assigned to Usermods data member. More...
bool CMSSearchSettings_Base::CanGetUsermods (void) const Check if it is safe to call GetUsermods method. More...
void CMSSearchSettings_Base::ResetUsermods (void) Reset Usermods data member. More...
const TUsermods & CMSSearchSettings_Base::GetUsermods (void) const Get the Usermods member data. More...
void CMSSearchSettings_Base::SetUsermods (TUsermods &value) Assign a value to Usermods data member. More...
TUsermods & CMSSearchSettings_Base::SetUsermods (void) Assign a value to Usermods data member. More...
bool CMSSearchSettings_Base::IsSetPseudocount (void) const min number of counts per precursor bin Check if a value has been assigned to Pseudocount data member. More...
bool CMSSearchSettings_Base::CanGetPseudocount (void) const Check if it is safe to call GetPseudocount method. More...
void CMSSearchSettings_Base::ResetPseudocount (void) Reset Pseudocount data member. More...
void CMSSearchSettings_Base::SetDefaultPseudocount (void) Assign default value to Pseudocount data member. More...
TPseudocount CMSSearchSettings_Base::GetPseudocount (void) const Get the Pseudocount member data. More...
void CMSSearchSettings_Base::SetPseudocount (TPseudocount value) Assign a value to Pseudocount data member. More...
TPseudocount & CMSSearchSettings_Base::SetPseudocount (void) Assign a value to Pseudocount data member. More...
bool CMSSearchSettings_Base::IsSetSearchb1 (void) const should b1 product be in search (1=no, 0=yes) Check if a value has been assigned to Searchb1 data member. More...
bool CMSSearchSettings_Base::CanGetSearchb1 (void) const Check if it is safe to call GetSearchb1 method. More...
void CMSSearchSettings_Base::ResetSearchb1 (void) Reset Searchb1 data member. More...
void CMSSearchSettings_Base::SetDefaultSearchb1 (void) Assign default value to Searchb1 data member. More...
TSearchb1 CMSSearchSettings_Base::GetSearchb1 (void) const Get the Searchb1 member data. More...
void CMSSearchSettings_Base::SetSearchb1 (TSearchb1 value) Assign a value to Searchb1 data member. More...
TSearchb1 & CMSSearchSettings_Base::SetSearchb1 (void) Assign a value to Searchb1 data member. More...
bool CMSSearchSettings_Base::IsSetSearchctermproduct (void) const should c terminus ion be searched (1=no, 0=yes) Check if a value has been assigned to Searchctermproduct data member. More...
bool CMSSearchSettings_Base::CanGetSearchctermproduct (void) const Check if it is safe to call GetSearchctermproduct method. More...
void CMSSearchSettings_Base::ResetSearchctermproduct (void) Reset Searchctermproduct data member. More...
void CMSSearchSettings_Base::SetDefaultSearchctermproduct (void) Assign default value to Searchctermproduct data member. More...
TSearchctermproduct CMSSearchSettings_Base::GetSearchctermproduct (void) const Get the Searchctermproduct member data. More...
void CMSSearchSettings_Base::SetSearchctermproduct (TSearchctermproduct value) Assign a value to Searchctermproduct data member. More...
TSearchctermproduct & CMSSearchSettings_Base::SetSearchctermproduct (void) Assign a value to Searchctermproduct data member. More...
bool CMSSearchSettings_Base::IsSetMaxproductions (void) const max number of ions in each series (0=all) Check if a value has been assigned to Maxproductions data member. More...
bool CMSSearchSettings_Base::CanGetMaxproductions (void) const Check if it is safe to call GetMaxproductions method. More...
void CMSSearchSettings_Base::ResetMaxproductions (void) Reset Maxproductions data member. More...
void CMSSearchSettings_Base::SetDefaultMaxproductions (void) Assign default value to Maxproductions data member. More...
TMaxproductions CMSSearchSettings_Base::GetMaxproductions (void) const Get the Maxproductions member data. More...
void CMSSearchSettings_Base::SetMaxproductions (TMaxproductions value) Assign a value to Maxproductions data member. More...
TMaxproductions & CMSSearchSettings_Base::SetMaxproductions (void) Assign a value to Maxproductions data member. More...
bool CMSSearchSettings_Base::IsSetMinnoenzyme (void) const min number of AA in peptide for noenzyme search Check if a value has been assigned to Minnoenzyme data member. More...
bool CMSSearchSettings_Base::CanGetMinnoenzyme (void) const Check if it is safe to call GetMinnoenzyme method. More...
void CMSSearchSettings_Base::ResetMinnoenzyme (void) Reset Minnoenzyme data member. More...
void CMSSearchSettings_Base::SetDefaultMinnoenzyme (void) Assign default value to Minnoenzyme data member. More...
TMinnoenzyme CMSSearchSettings_Base::GetMinnoenzyme (void) const Get the Minnoenzyme member data. More...
void CMSSearchSettings_Base::SetMinnoenzyme (TMinnoenzyme value) Assign a value to Minnoenzyme data member. More...
TMinnoenzyme & CMSSearchSettings_Base::SetMinnoenzyme (void) Assign a value to Minnoenzyme data member. More...
bool CMSSearchSettings_Base::IsSetMaxnoenzyme (void) const max number of AA in peptide for noenzyme search (0=none) Check if a value has been assigned to Maxnoenzyme data member. More...
bool CMSSearchSettings_Base::CanGetMaxnoenzyme (void) const Check if it is safe to call GetMaxnoenzyme method. More...
void CMSSearchSettings_Base::ResetMaxnoenzyme (void) Reset Maxnoenzyme data member. More...
void CMSSearchSettings_Base::SetDefaultMaxnoenzyme (void) Assign default value to Maxnoenzyme data member. More...
TMaxnoenzyme CMSSearchSettings_Base::GetMaxnoenzyme (void) const Get the Maxnoenzyme member data. More...
void CMSSearchSettings_Base::SetMaxnoenzyme (TMaxnoenzyme value) Assign a value to Maxnoenzyme data member. More...
TMaxnoenzyme & CMSSearchSettings_Base::SetMaxnoenzyme (void) Assign a value to Maxnoenzyme data member. More...
bool CMSSearchSettings_Base::IsSetExactmass (void) const the threshold in Da for adding neutron Check if a value has been assigned to Exactmass data member. More...
bool CMSSearchSettings_Base::CanGetExactmass (void) const Check if it is safe to call GetExactmass method. More...
void CMSSearchSettings_Base::ResetExactmass (void) Reset Exactmass data member. More...
TExactmass CMSSearchSettings_Base::GetExactmass (void) const Get the Exactmass member data. More...
void CMSSearchSettings_Base::SetExactmass (TExactmass value) Assign a value to Exactmass data member. More...
TExactmass & CMSSearchSettings_Base::SetExactmass (void) Assign a value to Exactmass data member. More...
bool CMSSearchSettings_Base::IsSetSettingid (void) const id of the search settings Check if a value has been assigned to Settingid data member. More...
bool CMSSearchSettings_Base::CanGetSettingid (void) const Check if it is safe to call GetSettingid method. More...
void CMSSearchSettings_Base::ResetSettingid (void) Reset Settingid data member. More...
TSettingid CMSSearchSettings_Base::GetSettingid (void) const Get the Settingid member data. More...
void CMSSearchSettings_Base::SetSettingid (TSettingid value) Assign a value to Settingid data member. More...
TSettingid & CMSSearchSettings_Base::SetSettingid (void) Assign a value to Settingid data member. More...
bool CMSSearchSettings_Base::IsSetIterativesettings (void) const iterative search settings Check if a value has been assigned to Iterativesettings data member. More...
bool CMSSearchSettings_Base::CanGetIterativesettings (void) const Check if it is safe to call GetIterativesettings method. More...
void CMSSearchSettings_Base::ResetIterativesettings (void) Reset Iterativesettings data member. More...
const TIterativesettings & CMSSearchSettings_Base::GetIterativesettings (void) const Get the Iterativesettings member data. More...
void CMSSearchSettings_Base::SetIterativesettings (TIterativesettings &value) Assign a value to Iterativesettings data member. More...
TIterativesettings & CMSSearchSettings_Base::SetIterativesettings (void) Assign a value to Iterativesettings data member. More...
bool CMSSearchSettings_Base::IsSetPrecursorcull (void) const turn on aggressive precursor culling for ETD (0=none) Check if a value has been assigned to Precursorcull data member. More...
bool CMSSearchSettings_Base::CanGetPrecursorcull (void) const Check if it is safe to call GetPrecursorcull method. More...
void CMSSearchSettings_Base::ResetPrecursorcull (void) Reset Precursorcull data member. More...
TPrecursorcull CMSSearchSettings_Base::GetPrecursorcull (void) const Get the Precursorcull member data. More...
void CMSSearchSettings_Base::SetPrecursorcull (TPrecursorcull value) Assign a value to Precursorcull data member. More...
TPrecursorcull & CMSSearchSettings_Base::SetPrecursorcull (void) Assign a value to Precursorcull data member. More...
bool CMSSearchSettings_Base::IsSetInfiles (void) const input files Check if a value has been assigned to Infiles data member. More...
bool CMSSearchSettings_Base::CanGetInfiles (void) const Check if it is safe to call GetInfiles method. More...
void CMSSearchSettings_Base::ResetInfiles (void) Reset Infiles data member. More...
const TInfiles & CMSSearchSettings_Base::GetInfiles (void) const Get the Infiles member data. More...
TInfiles & CMSSearchSettings_Base::SetInfiles (void) Assign a value to Infiles data member. More...
bool CMSSearchSettings_Base::IsSetOutfiles (void) const output files Check if a value has been assigned to Outfiles data member. More...
bool CMSSearchSettings_Base::CanGetOutfiles (void) const Check if it is safe to call GetOutfiles method. More...
void CMSSearchSettings_Base::ResetOutfiles (void) Reset Outfiles data member. More...
const TOutfiles & CMSSearchSettings_Base::GetOutfiles (void) const Get the Outfiles member data. More...
TOutfiles & CMSSearchSettings_Base::SetOutfiles (void) Assign a value to Outfiles data member. More...
bool CMSSearchSettings_Base::IsSetNocorrelationscore (void) const turn on correlation score (1=nocorr) Check if a value has been assigned to Nocorrelationscore data member. More...
bool CMSSearchSettings_Base::CanGetNocorrelationscore (void) const Check if it is safe to call GetNocorrelationscore method. More...
void CMSSearchSettings_Base::ResetNocorrelationscore (void) Reset Nocorrelationscore data member. More...
TNocorrelationscore CMSSearchSettings_Base::GetNocorrelationscore (void) const Get the Nocorrelationscore member data. More...
void CMSSearchSettings_Base::SetNocorrelationscore (TNocorrelationscore value) Assign a value to Nocorrelationscore data member. More...
TNocorrelationscore & CMSSearchSettings_Base::SetNocorrelationscore (void) Assign a value to Nocorrelationscore data member. More...
bool CMSSearchSettings_Base::IsSetProbfollowingion (void) const probability of a consecutive ion (used in correlation) Check if a value has been assigned to Probfollowingion data member. More...
bool CMSSearchSettings_Base::CanGetProbfollowingion (void) const Check if it is safe to call GetProbfollowingion method. More...
void CMSSearchSettings_Base::ResetProbfollowingion (void) Reset Probfollowingion data member. More...
TProbfollowingion CMSSearchSettings_Base::GetProbfollowingion (void) const Get the Probfollowingion member data. More...
void CMSSearchSettings_Base::SetProbfollowingion (TProbfollowingion value) Assign a value to Probfollowingion data member. More...
TProbfollowingion & CMSSearchSettings_Base::SetProbfollowingion (void) Assign a value to Probfollowingion data member. More...
bool CMSSearchSettings_Base::IsSetNmethionine (void) const should nmethionine be cleaved? Check if a value has been assigned to Nmethionine data member. More...
bool CMSSearchSettings_Base::CanGetNmethionine (void) const Check if it is safe to call GetNmethionine method. More...
void CMSSearchSettings_Base::ResetNmethionine (void) Reset Nmethionine data member. More...
TNmethionine CMSSearchSettings_Base::GetNmethionine (void) const Get the Nmethionine member data. More...
void CMSSearchSettings_Base::SetNmethionine (TNmethionine value) Assign a value to Nmethionine data member. More...
TNmethionine & CMSSearchSettings_Base::SetNmethionine (void) Assign a value to Nmethionine data member. More...
bool CMSSearchSettings_Base::IsSetAutomassadjust (void) const fraction allowable adjustment of product mass tolerance Check if a value has been assigned to Automassadjust data member. More...
bool CMSSearchSettings_Base::CanGetAutomassadjust (void) const Check if it is safe to call GetAutomassadjust method. More...
void CMSSearchSettings_Base::ResetAutomassadjust (void) Reset Automassadjust data member. More...
TAutomassadjust CMSSearchSettings_Base::GetAutomassadjust (void) const Get the Automassadjust member data. More...
void CMSSearchSettings_Base::SetAutomassadjust (TAutomassadjust value) Assign a value to Automassadjust data member. More...
TAutomassadjust & CMSSearchSettings_Base::SetAutomassadjust (void) Assign a value to Automassadjust data member. More...
bool CMSSearchSettings_Base::IsSetLomasscutoff (void) const low mass filter in Daltons, unscaled Check if a value has been assigned to Lomasscutoff data member. More...
bool CMSSearchSettings_Base::CanGetLomasscutoff (void) const Check if it is safe to call GetLomasscutoff method. More...
void CMSSearchSettings_Base::ResetLomasscutoff (void) Reset Lomasscutoff data member. More...
TLomasscutoff CMSSearchSettings_Base::GetLomasscutoff (void) const Get the Lomasscutoff member data. More...
void CMSSearchSettings_Base::SetLomasscutoff (TLomasscutoff value) Assign a value to Lomasscutoff data member. More...
TLomasscutoff & CMSSearchSettings_Base::SetLomasscutoff (void) Assign a value to Lomasscutoff data member. More...
bool CMSSearchSettings_Base::IsSetLibsearchsettings (void) const library search settings Check if a value has been assigned to Libsearchsettings data member. More...
bool CMSSearchSettings_Base::CanGetLibsearchsettings (void) const Check if it is safe to call GetLibsearchsettings method. More...
void CMSSearchSettings_Base::ResetLibsearchsettings (void) Reset Libsearchsettings data member. More...
const TLibsearchsettings & CMSSearchSettings_Base::GetLibsearchsettings (void) const Get the Libsearchsettings member data. More...
void CMSSearchSettings_Base::SetLibsearchsettings (TLibsearchsettings &value) Assign a value to Libsearchsettings data member. More...
TLibsearchsettings & CMSSearchSettings_Base::SetLibsearchsettings (void) Assign a value to Libsearchsettings data member. More...
bool CMSSearchSettings_Base::IsSetNoprolineions (void) const which ions to use no proline rule Check if a value has been assigned to Noprolineions data member. More...
bool CMSSearchSettings_Base::CanGetNoprolineions (void) const Check if it is safe to call GetNoprolineions method. More...
void CMSSearchSettings_Base::ResetNoprolineions (void) Reset Noprolineions data member. More...
const TNoprolineions & CMSSearchSettings_Base::GetNoprolineions (void) const Get the Noprolineions member data. More...
TNoprolineions & CMSSearchSettings_Base::SetNoprolineions (void) Assign a value to Noprolineions data member. More...
bool CMSSearchSettings_Base::IsSetReversesearch (void) const do reverse search Check if a value has been assigned to Reversesearch data member. More...
bool CMSSearchSettings_Base::CanGetReversesearch (void) const Check if it is safe to call GetReversesearch method. More...
void CMSSearchSettings_Base::ResetReversesearch (void) Reset Reversesearch data member. More...
TReversesearch CMSSearchSettings_Base::GetReversesearch (void) const Get the Reversesearch member data. More...
void CMSSearchSettings_Base::SetReversesearch (TReversesearch value) Assign a value to Reversesearch data member. More...
TReversesearch & CMSSearchSettings_Base::SetReversesearch (void) Assign a value to Reversesearch data member. More...
bool CMSSearchSettings_Base::IsSetOthersettings (void) const extra search settings Check if a value has been assigned to Othersettings data member. More...
bool CMSSearchSettings_Base::CanGetOthersettings (void) const Check if it is safe to call GetOthersettings method. More...
void CMSSearchSettings_Base::ResetOthersettings (void) Reset Othersettings data member. More...
const TOthersettings & CMSSearchSettings_Base::GetOthersettings (void) const Get the Othersettings member data. More...
TOthersettings & CMSSearchSettings_Base::SetOthersettings (void) Assign a value to Othersettings data member. More...
bool CMSSearchSettings_Base::IsSetNumisotopes (void) const number of isotopic peaks to search when using MSSearchType multiisotope Check if a value has been assigned to Numisotopes data member. More...
bool CMSSearchSettings_Base::CanGetNumisotopes (void) const Check if it is safe to call GetNumisotopes method. More...
void CMSSearchSettings_Base::ResetNumisotopes (void) Reset Numisotopes data member. More...
TNumisotopes CMSSearchSettings_Base::GetNumisotopes (void) const Get the Numisotopes member data. More...
void CMSSearchSettings_Base::SetNumisotopes (TNumisotopes value) Assign a value to Numisotopes data member. More...
TNumisotopes & CMSSearchSettings_Base::SetNumisotopes (void) Assign a value to Numisotopes data member. More...
bool CMSSearchSettings_Base::IsSetPepppm (void) const search precursor as ppm Check if a value has been assigned to Pepppm data member. More...
bool CMSSearchSettings_Base::CanGetPepppm (void) const Check if it is safe to call GetPepppm method. More...
void CMSSearchSettings_Base::ResetPepppm (void) Reset Pepppm data member. More...
TPepppm CMSSearchSettings_Base::GetPepppm (void) const Get the Pepppm member data. More...
void CMSSearchSettings_Base::SetPepppm (TPepppm value) Assign a value to Pepppm data member. More...
TPepppm & CMSSearchSettings_Base::SetPepppm (void) Assign a value to Pepppm data member. More...
bool CMSSearchSettings_Base::IsSetMsmsppm (void) const search product as ppm Check if a value has been assigned to Msmsppm data member. More...
bool CMSSearchSettings_Base::CanGetMsmsppm (void) const Check if it is safe to call GetMsmsppm method. More...
void CMSSearchSettings_Base::ResetMsmsppm (void) Reset Msmsppm data member. More...
TMsmsppm CMSSearchSettings_Base::GetMsmsppm (void) const Get the Msmsppm member data. More...
void CMSSearchSettings_Base::SetMsmsppm (TMsmsppm value) Assign a value to Msmsppm data member. More...
TMsmsppm & CMSSearchSettings_Base::SetMsmsppm (void) Assign a value to Msmsppm data member. More...
bool CMSSearchSettings_Base::IsSetReportedhitcount (void) const the maximum number of hits to report per spectrum, 0=all Check if a value has been assigned to Reportedhitcount data member. More...
bool CMSSearchSettings_Base::CanGetReportedhitcount (void) const Check if it is safe to call GetReportedhitcount method. More...
void CMSSearchSettings_Base::ResetReportedhitcount (void) Reset Reportedhitcount data member. More...
TReportedhitcount CMSSearchSettings_Base::GetReportedhitcount (void) const Get the Reportedhitcount member data. More...
void CMSSearchSettings_Base::SetReportedhitcount (TReportedhitcount value) Assign a value to Reportedhitcount data member. More...
TReportedhitcount & CMSSearchSettings_Base::SetReportedhitcount (void) Assign a value to Reportedhitcount data member. More...
virtual void CMSSearchSettings_Base::Reset (void) Reset the whole object. More...
CMSSearchSettings_Base::CMSSearchSettings_Base (const CMSSearchSettings_Base &) CMSSearchSettings_Base & CMSSearchSettings_Base::operator= (const CMSSearchSettings_Base &) CMSSearchSettingsSet::CMSSearchSettingsSet (void) CMSSearchSettingsSet::~CMSSearchSettingsSet (void) CMSSearchSettingsSet::CMSSearchSettingsSet (const CMSSearchSettingsSet &value) CMSSearchSettingsSet & CMSSearchSettingsSet::operator= (const CMSSearchSettingsSet &value) CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base (void) virtual CMSSearchSettingsSet_Base::~CMSSearchSettingsSet_Base (void) CMSSearchSettingsSet_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSSearchSettingsSet_Base::IsSet (void) const Check if a value has been assigned to data member. More...
bool CMSSearchSettingsSet_Base::CanGet (void) const Check if it is safe to call Get method. More...
void CMSSearchSettingsSet_Base::Reset (void) Reset data member. More...
const Tdata & CMSSearchSettingsSet_Base::Get (void) const Get the member data. More...
Tdata & CMSSearchSettingsSet_Base::Set (void) Assign a value to data member. More...
CMSSearchSettingsSet_Base::operator const Tdata & (void) const Conversion operator to 'const Tdata' type. More...
CMSSearchSettingsSet_Base::operator Tdata & (void) Conversion operator to 'Tdata' type. More...
CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base (const CMSSearchSettingsSet_Base &) CMSSearchSettingsSet_Base & CMSSearchSettingsSet_Base::operator= (const CMSSearchSettingsSet_Base &) CMSSpectrum::CMSSpectrum (void) CMSSpectrum::~CMSSpectrum (void) CMSSpectrum::CMSSpectrum (const CMSSpectrum &value) CMSSpectrum & CMSSpectrum::operator= (const CMSSpectrum &value) CMSSpectrum_Base::CMSSpectrum_Base (void) virtual CMSSpectrum_Base::~CMSSpectrum_Base (void) CMSSpectrum_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSSpectrum_Base::IsSetNumber (void) const unique number of spectrum Check if a value has been assigned to Number data member. More...
bool CMSSpectrum_Base::CanGetNumber (void) const Check if it is safe to call GetNumber method. More...
void CMSSpectrum_Base::ResetNumber (void) Reset Number data member. More...
TNumber CMSSpectrum_Base::GetNumber (void) const Get the Number member data. More...
void CMSSpectrum_Base::SetNumber (TNumber value) Assign a value to Number data member. More...
TNumber & CMSSpectrum_Base::SetNumber (void) Assign a value to Number data member. More...
bool CMSSpectrum_Base::IsSetCharge (void) const may be more than one if unknown Check if a value has been assigned to Charge data member. More...
bool CMSSpectrum_Base::CanGetCharge (void) const Check if it is safe to call GetCharge method. More...
void CMSSpectrum_Base::ResetCharge (void) Reset Charge data member. More...
const TCharge & CMSSpectrum_Base::GetCharge (void) const Get the Charge member data. More...
TCharge & CMSSpectrum_Base::SetCharge (void) Assign a value to Charge data member. More...
bool CMSSpectrum_Base::IsSetPrecursormz (void) const scaled precursor m/z, scale is in MSSearchSettings Check if a value has been assigned to Precursormz data member. More...
bool CMSSpectrum_Base::CanGetPrecursormz (void) const Check if it is safe to call GetPrecursormz method. More...
void CMSSpectrum_Base::ResetPrecursormz (void) Reset Precursormz data member. More...
TPrecursormz CMSSpectrum_Base::GetPrecursormz (void) const Get the Precursormz member data. More...
void CMSSpectrum_Base::SetPrecursormz (TPrecursormz value) Assign a value to Precursormz data member. More...
TPrecursormz & CMSSpectrum_Base::SetPrecursormz (void) Assign a value to Precursormz data member. More...
bool CMSSpectrum_Base::IsSetMz (void) const scaled product m/z Check if a value has been assigned to Mz data member. More...
bool CMSSpectrum_Base::CanGetMz (void) const Check if it is safe to call GetMz method. More...
void CMSSpectrum_Base::ResetMz (void) Reset Mz data member. More...
const TMz & CMSSpectrum_Base::GetMz (void) const Get the Mz member data. More...
TMz & CMSSpectrum_Base::SetMz (void) Assign a value to Mz data member. More...
bool CMSSpectrum_Base::IsSetAbundance (void) const scaled product abundance Check if a value has been assigned to Abundance data member. More...
bool CMSSpectrum_Base::CanGetAbundance (void) const Check if it is safe to call GetAbundance method. More...
void CMSSpectrum_Base::ResetAbundance (void) Reset Abundance data member. More...
const TAbundance & CMSSpectrum_Base::GetAbundance (void) const Get the Abundance member data. More...
TAbundance & CMSSpectrum_Base::SetAbundance (void) Assign a value to Abundance data member. More...
bool CMSSpectrum_Base::IsSetIscale (void) const abundance scale, float to integer Check if a value has been assigned to Iscale data member. More...
bool CMSSpectrum_Base::CanGetIscale (void) const Check if it is safe to call GetIscale method. More...
void CMSSpectrum_Base::ResetIscale (void) Reset Iscale data member. More...
TIscale CMSSpectrum_Base::GetIscale (void) const Get the Iscale member data. More...
void CMSSpectrum_Base::SetIscale (TIscale value) Assign a value to Iscale data member. More...
TIscale & CMSSpectrum_Base::SetIscale (void) Assign a value to Iscale data member. More...
bool CMSSpectrum_Base::IsSetIds (void) const ids/filenames Check if a value has been assigned to Ids data member. More...
bool CMSSpectrum_Base::CanGetIds (void) const Check if it is safe to call GetIds method. More...
void CMSSpectrum_Base::ResetIds (void) Reset Ids data member. More...
const TIds & CMSSpectrum_Base::GetIds (void) const Get the Ids member data. More...
TIds & CMSSpectrum_Base::SetIds (void) Assign a value to Ids data member. More...
bool CMSSpectrum_Base::IsSetNamevalue (void) const extra info: retention times, etc. More...
bool CMSSpectrum_Base::CanGetNamevalue (void) const Check if it is safe to call GetNamevalue method. More...
void CMSSpectrum_Base::ResetNamevalue (void) Reset Namevalue data member. More...
const TNamevalue & CMSSpectrum_Base::GetNamevalue (void) const Get the Namevalue member data. More...
TNamevalue & CMSSpectrum_Base::SetNamevalue (void) Assign a value to Namevalue data member. More...
virtual void CMSSpectrum_Base::Reset (void) Reset the whole object. More...
CMSSpectrum_Base::CMSSpectrum_Base (const CMSSpectrum_Base &) CMSSpectrum_Base & CMSSpectrum_Base::operator= (const CMSSpectrum_Base &) CMSSpectrumset::CMSSpectrumset (void) CMSSpectrumset::~CMSSpectrumset (void) CMSSpectrumset::CMSSpectrumset (const CMSSpectrumset &value) CMSSpectrumset & CMSSpectrumset::operator= (const CMSSpectrumset &value) CMSSpectrumset_Base::CMSSpectrumset_Base (void) virtual CMSSpectrumset_Base::~CMSSpectrumset_Base (void) CMSSpectrumset_Base::DECLARE_INTERNAL_TYPE_INFO () bool CMSSpectrumset_Base::IsSet (void) const Check if a value has been assigned to data member. More...
bool CMSSpectrumset_Base::CanGet (void) const Check if it is safe to call Get method. More...
void CMSSpectrumset_Base::Reset (void) Reset data member. More...
const Tdata & CMSSpectrumset_Base::Get (void) const Get the member data. More...
Tdata & CMSSpectrumset_Base::Set (void) Assign a value to data member. More...
CMSSpectrumset_Base::operator const Tdata & (void) const Conversion operator to 'const Tdata' type. More...
CMSSpectrumset_Base::operator Tdata & (void) Conversion operator to 'Tdata' type. More...
CMSSpectrumset_Base::CMSSpectrumset_Base (const CMSSpectrumset_Base &) CMSSpectrumset_Base & CMSSpectrumset_Base::operator= (const CMSSpectrumset_Base &) CNameValue::CNameValue (void) CNameValue::~CNameValue (void) CNameValue::CNameValue (const CNameValue &value) CNameValue & CNameValue::operator= (const CNameValue &value) CNameValue_Base::CNameValue_Base (void) virtual CNameValue_Base::~CNameValue_Base (void) CNameValue_Base::DECLARE_INTERNAL_TYPE_INFO () bool CNameValue_Base::IsSetName (void) const Check if a value has been assigned to Name data member. More...
bool CNameValue_Base::CanGetName (void) const Check if it is safe to call GetName method. More...
void CNameValue_Base::ResetName (void) Reset Name data member. More...
const TName & CNameValue_Base::GetName (void) const Get the Name member data. More...
void CNameValue_Base::SetName (const TName &value) Assign a value to Name data member. More...
void CNameValue_Base::SetName (TName &&value) TName & CNameValue_Base::SetName (void) Assign a value to Name data member. More...
bool CNameValue_Base::IsSetValue (void) const Check if a value has been assigned to Value data member. More...
bool CNameValue_Base::CanGetValue (void) const Check if it is safe to call GetValue method. More...
void CNameValue_Base::ResetValue (void) Reset Value data member. More...
const TValue & CNameValue_Base::GetValue (void) const Get the Value member data. More...
void CNameValue_Base::SetValue (const TValue &value) Assign a value to Value data member. More...
void CNameValue_Base::SetValue (TValue &&value) TValue & CNameValue_Base::SetValue (void) Assign a value to Value data member. More...
virtual void CNameValue_Base::Reset (void) Reset the whole object. More...
CNameValue_Base::CNameValue_Base (const CNameValue_Base &) CNameValue_Base & CNameValue_Base::operator= (const CNameValue_Base &) ◆ TAbundance ◆ TAccession ◆ TAnnotation ◆ TAutomassadjust ◆ TAveragemass [1/2] ◆ TAveragemass [2/2] ◆ TBioseqs ◆ TCalccharge ◆ TCalcplusone ◆ TCharge [1/3] ◆ TCharge [2/3] ◆ TCharge [3/3] ◆ TChargehandling ◆ TConsidermult ◆ TCuthi ◆ TCutinc ◆ TCutlo ◆ TCutoff ◆ Tdata [1/4] ◆ Tdata [2/4] ◆ Tdata [3/4] ◆ Tdata [4/4] ◆ TDb ◆ TDbversion ◆ TDefline ◆ TDoublenum ◆ TDoublewin ◆ TEmail ◆ TEnzyme ◆ TError [1/2] ◆ TError [2/2] ◆ TEvalue ◆ TExactmass ◆ TFixed ◆ TGi ◆ THitlistlen ◆ THits ◆ THitsets ◆ TIds [1/2] ◆ TIds [2/2] ◆ TImmonium ◆ TIncluderequest ◆ TIndex ◆ TInfile ◆ TInfiles ◆ TInfiletype ◆ TInternal ◆ TIon ◆ TIonstosearch ◆ TIscale ◆ TIsotope ◆ TIterativesettings ◆ TLibaccession ◆ TLibnames ◆ TLibsearchsettings ◆ TLomasscutoff ◆ TMass ◆ TMassdiff ◆ TMaxcharge ◆ TMaxmods ◆ TMaxnoenzyme ◆ TMaxproductcharge ◆ TMaxproductions ◆ TmemberIndex [1/23] ◆ TmemberIndex [2/23] ◆ TmemberIndex [3/23] ◆ TmemberIndex [4/23] ◆ TmemberIndex [5/23] ◆ TmemberIndex [6/23] ◆ TmemberIndex [7/23] ◆ TmemberIndex [8/23] ◆ TmemberIndex [9/23] ◆ TmemberIndex [10/23] ◆ TmemberIndex [11/23] ◆ TmemberIndex [12/23] ◆ TmemberIndex [13/23] ◆ TmemberIndex [14/23] ◆ TmemberIndex [15/23] ◆ TmemberIndex [16/23] ◆ TmemberIndex [17/23] ◆ TmemberIndex [18/23] ◆ TmemberIndex [19/23] ◆ TmemberIndex [20/23] ◆ TmemberIndex [21/23] ◆ TmemberIndex [22/23] ◆ TmemberIndex [23/23] ◆ TMincharge ◆ TMinhit ◆ TMinnoenzyme ◆ TMinspectra ◆ TMissedcleave ◆ TMissingisotope ◆ TMod ◆ TMods ◆ TModset ◆ TModtype ◆ TMonomass [1/2] ◆ TMonomass [2/2] ◆ TMoreion ◆ TMoresettings ◆ TMsmsppm ◆ TMsmstol ◆ TMz [1/2] ◆ TMz [2/2] ◆ TMzhits ◆ TN15mass [1/2] ◆ TN15mass [2/2] ◆ TName [1/3] ◆ TName [2/3] ◆ TName [3/3] ◆ TNamevalue [1/2] ◆ TNamevalue [2/2] ◆ TNegative ◆ TNeutralloss [1/2] ◆ TNeutralloss [2/2] ◆ TNmethionine ◆ TNocorrelationscore ◆ TNoprolineions ◆ TNumber [1/3] ◆ TNumber [2/3] ◆ TNumber [3/3] ◆ TNumisotopes ◆ TOid [1/3] ◆ TOid [2/3] ◆ TOid [3/3] ◆ TOthersettings ◆ TOutfile ◆ TOutfiles ◆ TOutfiletype ◆ Tparent [1/47] ◆ Tparent [2/47] ◆ Tparent [3/47] ◆ Tparent [4/47] ◆ Tparent [5/47] ◆ Tparent [6/47] ◆ Tparent [7/47] ◆ Tparent [8/47] ◆ Tparent [9/47] ◆ Tparent [10/47] ◆ TParent ◆ Tparent [11/47] ◆ Tparent [12/47] ◆ Tparent [13/47] ◆ Tparent [14/47] ◆ Tparent [15/47] ◆ Tparent [16/47] ◆ Tparent [17/47] ◆ Tparent [18/47] ◆ Tparent [19/47] ◆ Tparent [20/47] ◆ Tparent [21/47] ◆ Tparent [22/47] ◆ Tparent [23/47] ◆ Tparent [24/47] ◆ Tparent [25/47] ◆ Tparent [26/47] ◆ Tparent [27/47] ◆ Tparent [28/47] ◆ Tparent [29/47] ◆ Tparent [30/47] ◆ Tparent [31/47] ◆ Tparent [32/47] ◆ Tparent [33/47] ◆ Tparent [34/47] ◆ Tparent [35/47] ◆ Tparent [36/47] ◆ Tparent [37/47] ◆ Tparent [38/47] ◆ Tparent [39/47] ◆ Tparent [40/47] ◆ Tparent [41/47] ◆ Tparent [42/47] ◆ Tparent [43/47] ◆ Tparent [44/47] ◆ Tparent [45/47] ◆ Tparent [46/47] ◆ Tparent [47/47] ◆ TPephits ◆ TPepppm ◆ TPepstart [1/2] ◆ TPepstart [2/2] ◆ TPepstop [1/2] ◆ TPepstop [2/2] ◆ TPepstring ◆ TPeptol ◆ TPlusone ◆ TPrecursorcull ◆ TPrecursormz ◆ TPrecursorsearchtype ◆ TPresearch ◆ TProbfollowingion ◆ TProdlesspre ◆ TProduct ◆ TProductsearchtype ◆ TProtlength [1/2] ◆ TProtlength [2/2] ◆ TPseudocount ◆ TPsi_ms ◆ TPvalue ◆ TQtofscore ◆ TReplacethresh ◆ TReportedhitcount ◆ TRequest ◆ TResearchthresh ◆ TResidues ◆ TResponse ◆ TReversed ◆ TReversesearch ◆ TRid [1/2] ◆ TRid [2/2] ◆ TScale [1/2] ◆ TScale [2/2] ◆ TScores ◆ TSearchb1 ◆ TSearchctermproduct ◆ TSeq ◆ TSettingid [1/2] ◆ TSettingid [2/2] ◆ TSettings ◆ TSinglenum ◆ TSinglewin ◆ TSite ◆ TSpectra ◆ TStart ◆ TStop ◆ TSubsetthresh ◆ TSuspect ◆ TTaxids ◆ TTheomass ◆ TTophitnum ◆ TType ◆ TUnimod ◆ TUseomssascore ◆ TUserannotation ◆ TUsereplicatescore ◆ TUsermods ◆ TValue [1/2] ◆ TValue [2/2] ◆ TVariable ◆ TVersion ◆ TZdep ◆ E_memberIndex [1/23] Enumerator e__allMandatory e_oid e_seq

Definition at line 90 of file MSBioseq_.hpp.

◆ E_memberIndex [2/23] Enumerator e__allMandatory e_calcplusone e_calccharge e_mincharge e_maxcharge e_considermult e_plusone e_maxproductcharge e_prodlesspre e_negative

Definition at line 98 of file MSChargeHandle_.hpp.

◆ E_memberIndex [3/23] Enumerator e__allMandatory e_evalue e_pvalue e_charge e_pephits e_mzhits e_pepstring e_mass e_mods e_pepstart e_pepstop e_protlength e_theomass e_oid e_scores e_libaccession

Definition at line 111 of file MSHits_.hpp.

◆ E_memberIndex [4/23] Enumerator e__allMandatory e_number e_error e_hits e_ids e_namevalue e_settingid e_userannotation

Definition at line 104 of file MSHitSet_.hpp.

◆ E_memberIndex [5/23] Enumerator e__allMandatory e_parent e_product

Definition at line 90 of file MSImmonium_.hpp.

◆ E_memberIndex [6/23] Enumerator e__allMandatory e_infile e_infiletype

Definition at line 90 of file MSInFile_.hpp.

◆ E_memberIndex [7/23] Enumerator e__allMandatory e_neutralloss e_isotope e_internal e_immonium

Definition at line 98 of file MSIon_.hpp.

◆ E_memberIndex [8/23] Enumerator e__allMandatory e_suspect e_massdiff e_missingisotope

Definition at line 87 of file MSIonAnnot_.hpp.

◆ E_memberIndex [9/23] Enumerator e__allMandatory e_researchthresh e_subsetthresh e_replacethresh

Definition at line 87 of file MSIterativeSettings_.hpp.

◆ E_memberIndex [10/23] Enumerator e__allMandatory e_libnames e_presearch e_useomssascore e_usereplicatescore e_qtofscore

Definition at line 94 of file MSLibrarySettings_.hpp.

◆ E_memberIndex [11/23] Enumerator e__allMandatory e_monomass e_averagemass e_n15mass

Definition at line 87 of file MSMassSet_.hpp.

◆ E_memberIndex [12/23] Enumerator e__allMandatory e_site e_modtype

Definition at line 90 of file MSModHit_.hpp.

◆ E_memberIndex [13/23] Enumerator e__allMandatory e_mod e_type e_name e_monomass e_averagemass e_n15mass e_residues e_neutralloss e_unimod e_psi_ms

Definition at line 105 of file MSModSpec_.hpp.

◆ E_memberIndex [14/23] Enumerator e__allMandatory e_ion e_charge e_number e_mz e_index e_moreion e_annotation

Definition at line 100 of file MSMZHit_.hpp.

◆ E_memberIndex [15/23] Enumerator e__allMandatory e_outfile e_outfiletype e_includerequest

Definition at line 91 of file MSOutFile_.hpp.

◆ E_memberIndex [16/23] Enumerator e__allMandatory e_start e_stop e_gi e_accession e_defline e_protlength e_oid e_reversed e_pepstart e_pepstop

Definition at line 99 of file MSPepHit_.hpp.

◆ E_memberIndex [17/23] Enumerator e__allMandatory e_spectra e_settings e_rid e_moresettings e_modset

Definition at line 100 of file MSRequest_.hpp.

◆ E_memberIndex [18/23] Enumerator e__allMandatory e_hitsets e_scale e_rid e_error e_version e_email e_dbversion e_bioseqs

Definition at line 103 of file MSResponse_.hpp.

◆ E_memberIndex [19/23] Enumerator e__allMandatory e_name e_value

Definition at line 90 of file MSScoreSet_.hpp.

◆ E_memberIndex [20/23] Enumerator e__allMandatory e_request e_response

Definition at line 95 of file MSSearch_.hpp.

◆ E_memberIndex [21/23] Enumerator e__allMandatory e_precursorsearchtype e_productsearchtype e_ionstosearch e_peptol e_msmstol e_zdep e_cutoff e_cutlo e_cuthi e_cutinc e_singlewin e_doublewin e_singlenum e_doublenum e_fixed e_variable e_enzyme e_missedcleave e_hitlistlen e_db e_tophitnum e_minhit e_minspectra e_scale e_maxmods e_taxids e_chargehandling e_usermods e_pseudocount e_searchb1 e_searchctermproduct e_maxproductions e_minnoenzyme e_maxnoenzyme e_exactmass e_settingid e_iterativesettings e_precursorcull e_infiles e_outfiles e_nocorrelationscore e_probfollowingion e_nmethionine e_automassadjust e_lomasscutoff e_libsearchsettings e_noprolineions e_reversesearch e_othersettings e_numisotopes e_pepppm e_msmsppm e_reportedhitcount

Definition at line 157 of file MSSearchSettings_.hpp.

◆ E_memberIndex [22/23] Enumerator e__allMandatory e_number e_charge e_precursormz e_mz e_abundance e_iscale e_ids e_namevalue

Definition at line 102 of file MSSpectrum_.hpp.

◆ E_memberIndex [23/23] Enumerator e__allMandatory e_name e_value

Definition at line 90 of file NameValue_.hpp.

◆ EMSCalcCharge

user instructions on whether to believe charges in input file

Access to EMSCalcCharge's attributes (values, names) as defined in spec.

Enumerator eMSCalcCharge_calculate

guess the charge(s) from the data

eMSCalcCharge_usefile

use what the input file says

eMSCalcCharge_userange

use the charge range specified

Definition at line 64 of file MSCalcCharge_.hpp.

◆ EMSCalcPlusOne

How is charge to be handled? Some input files are not clear on this.

Access to EMSCalcPlusOne's attributes (values, names) as defined in spec.

For example, a dta file only specifies one charge, even though the charge is not really known.

Enumerator eMSCalcPlusOne_dontcalc

don't guess charge one

eMSCalcPlusOne_calc

guess charge one

Definition at line 66 of file MSCalcPlusOne_.hpp.

◆ EMSEnzymes

enumerate enzymes

Access to EMSEnzymes's attributes (values, names) as defined in spec.

Enumerator eMSEnzymes_trypsin eMSEnzymes_argc eMSEnzymes_cnbr eMSEnzymes_chymotrypsin eMSEnzymes_formicacid eMSEnzymes_lysc eMSEnzymes_lysc_p eMSEnzymes_pepsin_a eMSEnzymes_tryp_cnbr eMSEnzymes_tryp_chymo eMSEnzymes_trypsin_p eMSEnzymes_whole_protein eMSEnzymes_aspn eMSEnzymes_gluc eMSEnzymes_aspngluc eMSEnzymes_top_down eMSEnzymes_semi_tryptic eMSEnzymes_no_enzyme eMSEnzymes_chymotrypsin_p eMSEnzymes_aspn_de eMSEnzymes_gluc_de eMSEnzymes_lysn eMSEnzymes_thermolysin_p eMSEnzymes_semi_chymotrypsin eMSEnzymes_semi_gluc eMSEnzymes_max eMSEnzymes_none

Definition at line 64 of file MSEnzymes_.hpp.

◆ EMSHitError

error return for a particular spectrum's hitset

Access to EMSHitError's attributes (values, names) as defined in spec.

Enumerator eMSHitError_none eMSHitError_generalerr eMSHitError_unable2read

can't read the spectrum

eMSHitError_notenuffpeaks

not enough peaks to search

Definition at line 64 of file MSHitError_.hpp.

◆ EMSIonIsotopicType

iosotopic type of ion

Access to EMSIonIsotopicType's attributes (values, names) as defined in spec.

Enumerator eMSIonIsotopicType_monoisotopic

no c13s in molecule

eMSIonIsotopicType_c13

one c13 in molecule

eMSIonIsotopicType_c13two

two c13s in molecule, and so on...

eMSIonIsotopicType_c13three eMSIonIsotopicType_c13four

Definition at line 64 of file MSIonIsotopicType_.hpp.

◆ EMSIonNeutralLoss

types of neutral loss

Access to EMSIonNeutralLoss's attributes (values, names) as defined in spec.

Enumerator eMSIonNeutralLoss_water

minus 18 Da

eMSIonNeutralLoss_ammonia

minus 17 Da

Definition at line 64 of file MSIonNeutralLoss_.hpp.

◆ EMSIonType

enumeration of ion types

Access to EMSIonType's attributes (values, names) as defined in spec.

Enumerator eMSIonType_a eMSIonType_b eMSIonType_c eMSIonType_x eMSIonType_y eMSIonType_z

actually zdot

eMSIonType_parent eMSIonType_internal eMSIonType_immonium eMSIonType_unknown eMSIonType_adot eMSIonType_x_CO2 eMSIonType_adot_CO2 eMSIonType_max

Definition at line 64 of file MSIonType_.hpp.

◆ EMSMod

enumerate modifications

Access to EMSMod's attributes (values, names) as defined in spec.

Enumerator eMSMod_methylk

methylation of K

eMSMod_oxym

oxidation of methionine

eMSMod_carboxymethylc

carboxymethyl cysteine

eMSMod_carbamidomethylc

carbamidomethyl cysteine

eMSMod_deamidationkq

deamidation of K and Q

eMSMod_propionamidec

propionamide cysteine

eMSMod_phosphorylations

phosphorylation of S

eMSMod_phosphorylationt

phosphorylation of T

eMSMod_phosphorylationy

phosphorylation of Y

eMSMod_ntermmcleave

N terminal methionine cleavage.

eMSMod_ntermacetyl

N terminal protein acetyl.

eMSMod_ntermmethyl

N terminal protein methyl.

eMSMod_ntermtrimethyl

N terminal protein trimethyl.

eMSMod_methythiold

beta methythiolation of D

eMSMod_methylq

methylation of Q

eMSMod_trimethylk

trimethylation of K

eMSMod_methyld

methylation of D

eMSMod_methyle

methylation of E

eMSMod_ctermpepmethyl

C terminal methylation.

eMSMod_trideuteromethyld

trideuteromethylation of D

eMSMod_trideuteromethyle

trideuteromethylation of E

eMSMod_ctermpeptrideuteromethyl

C terminal trideuteromethylation.

eMSMod_nformylmet eMSMod_twoamino3oxobutanoicacid eMSMod_acetylk eMSMod_ctermamide eMSMod_bmethylthiold eMSMod_carbamidomethylk eMSMod_carbamidometylh eMSMod_carbamidomethyld eMSMod_carbamidomethyle eMSMod_carbamylk eMSMod_ntermcarbamyl eMSMod_citrullinationr eMSMod_cysteicacidc eMSMod_diiodinationy eMSMod_dimethylk eMSMod_dimethylr eMSMod_ntermpepdimethyl eMSMod_dihydroxyf eMSMod_thioacetylk eMSMod_ntermpeptioacetyl eMSMod_farnesylationc eMSMod_formylk eMSMod_ntermpepformyl eMSMod_formylkynureninw eMSMod_phef eMSMod_gammacarboxyld eMSMod_gammacarboxyle eMSMod_geranylgeranylc eMSMod_ntermpepglucuronylg eMSMod_glutathionec eMSMod_glyglyk eMSMod_guanidinationk eMSMod_his2asnh eMSMod_his2asph eMSMod_ctermpephsem eMSMod_ctermpephselactm eMSMod_hydroxykynureninw eMSMod_hydroxylationd eMSMod_hydroxylationk eMSMod_hydroxylationn eMSMod_hydroxylationp eMSMod_hydroxylationf eMSMod_hydroxylationy eMSMod_iodinationy eMSMod_kynureninw eMSMod_lipoylk eMSMod_ctermpepmeester eMSMod_meesterd eMSMod_meestere eMSMod_meesters eMSMod_meestery eMSMod_methylc eMSMod_methylh eMSMod_methyln eMSMod_ntermpepmethyl eMSMod_methylr eMSMod_ntermpepmyristoyeylationg eMSMod_ntermpepmyristoyl4hg eMSMod_ntermpepmyristoylationg eMSMod_myristoylationk eMSMod_ntermformyl eMSMod_nemc eMSMod_nipcam eMSMod_nitrow eMSMod_nitroy eMSMod_ctermpepo18 eMSMod_ctermpepdio18 eMSMod_oxyh eMSMod_oxyw eMSMod_ppantetheines eMSMod_palmitoylationc eMSMod_palmitoylationk eMSMod_palmitoylations eMSMod_palmitoylationt eMSMod_phospholosss eMSMod_phospholosst eMSMod_phospholossy eMSMod_phosphoneutrallossc eMSMod_phosphoneutrallossd eMSMod_phosphoneutrallossh eMSMod_propionylk eMSMod_ntermpeppropionyl eMSMod_propionylheavyk eMSMod_ntermpeppropionylheavy eMSMod_pyridylk eMSMod_ntermpeppyridyl eMSMod_ntermpeppyrocmc eMSMod_ntermpeppyroe eMSMod_ntermpeppyroq eMSMod_pyroglutamicp eMSMod_spyridylethylc eMSMod_semetm eMSMod_sulfationy eMSMod_suphonem eMSMod_triiodinationy eMSMod_trimethylationr eMSMod_ntermpeptripalmitatec eMSMod_usermod1

start of user defined mods

eMSMod_usermod2 eMSMod_usermod3 eMSMod_usermod4 eMSMod_usermod5 eMSMod_usermod6 eMSMod_usermod7 eMSMod_usermod8 eMSMod_usermod9 eMSMod_usermod10

end of user defined mods

eMSMod_icatlight eMSMod_icatheavy eMSMod_camthiopropanoylk eMSMod_phosphoneutrallosss eMSMod_phosphoneutrallosst eMSMod_phosphoetdlosss eMSMod_phosphoetdlosst eMSMod_arg_13c6 eMSMod_arg_13c6_15n4 eMSMod_lys_13c6 eMSMod_oxy18 eMSMod_beta_elim_s eMSMod_beta_elim_t eMSMod_usermod11 eMSMod_usermod12 eMSMod_usermod13 eMSMod_usermod14 eMSMod_usermod15 eMSMod_usermod16 eMSMod_usermod17 eMSMod_usermod18 eMSMod_usermod19 eMSMod_usermod20 eMSMod_usermod21 eMSMod_usermod22 eMSMod_usermod23 eMSMod_usermod24 eMSMod_usermod25 eMSMod_usermod26 eMSMod_usermod27 eMSMod_usermod28 eMSMod_usermod29 eMSMod_usermod30 eMSMod_sulfinicacid eMSMod_arg2orn eMSMod_dehydro eMSMod_carboxykynurenin eMSMod_sumoylation eMSMod_iTRAQ114nterm eMSMod_iTRAQ114K eMSMod_iTRAQ114Y eMSMod_iTRAQ115nterm eMSMod_iTRAQ115K eMSMod_iTRAQ115Y eMSMod_iTRAQ116nterm eMSMod_iTRAQ116K eMSMod_iTRAQ116Y eMSMod_iTRAQ117nterm eMSMod_iTRAQ117K eMSMod_iTRAQ117Y eMSMod_mmts eMSMod_lys_2H4 eMSMod_lys_13C615N2 eMSMod_hexNAcN eMSMod_dHexHexNAcN eMSMod_hexNAcS eMSMod_hexNAcT eMSMod_mod186 eMSMod_mod187 eMSMod_mod188 eMSMod_mod189 eMSMod_mod190 eMSMod_mod191 eMSMod_mod192 eMSMod_mod193 eMSMod_mod194 eMSMod_mod195 eMSMod_mod196 eMSMod_mod197 eMSMod_mod198 eMSMod_mod199 eMSMod_mod200 eMSMod_mod201 eMSMod_mod202 eMSMod_mod203 eMSMod_mod204 eMSMod_mod205 eMSMod_mod206 eMSMod_mod207 eMSMod_mod208 eMSMod_mod209 eMSMod_mod210 eMSMod_mod211 eMSMod_mod212 eMSMod_mod213 eMSMod_mod214 eMSMod_mod215 eMSMod_mod216 eMSMod_mod217 eMSMod_mod218 eMSMod_mod219 eMSMod_mod220 eMSMod_mod221 eMSMod_mod222 eMSMod_mod223 eMSMod_mod224 eMSMod_mod225 eMSMod_mod226 eMSMod_mod227 eMSMod_mod228 eMSMod_mod229 eMSMod_mod230 eMSMod_max

maximum number of mods

eMSMod_unknown

modification of unknown type

eMSMod_none

Definition at line 64 of file MSMod_.hpp.

◆ EMSModType

enumerate modification types

Access to EMSModType's attributes (values, names) as defined in spec.

Enumerator eMSModType_modaa

at particular amino acids

eMSModType_modn

at the N terminus of a protein

eMSModType_modnaa

at the N terminus of a protein at particular amino acids

eMSModType_modc

at the C terminus of a protein

eMSModType_modcaa

at the C terminus of a protein at particular amino acids

eMSModType_modnp

at the N terminus of a peptide

eMSModType_modnpaa

at the N terminus of a peptide at particular amino acids

eMSModType_modcp

at the C terminus of a peptide

eMSModType_modcpaa

at the C terminus of a peptide at particular amino acids

eMSModType_modmax

the max number of modification types

Definition at line 64 of file MSModType_.hpp.

◆ EMSResponseError

error return for the entire response

Access to EMSResponseError's attributes (values, names) as defined in spec.

Enumerator eMSResponseError_none eMSResponseError_generalerr eMSResponseError_noblastdb

unable to open blast library

eMSResponseError_noinput

input missing

Definition at line 64 of file MSResponseError_.hpp.

◆ EMSSearchType

what type of atomic mass to use

Access to EMSSearchType's attributes (values, names) as defined in spec.

Enumerator eMSSearchType_monoisotopic eMSSearchType_average eMSSearchType_monon15 eMSSearchType_exact eMSSearchType_multiisotope eMSSearchType_max

Definition at line 64 of file MSSearchType_.hpp.

◆ EMSSerialDataFormat

Access to EMSSerialDataFormat's attributes (values, names) as defined in spec.

Enumerator eMSSerialDataFormat_none eMSSerialDataFormat_asntext

open ASN.1 text format

eMSSerialDataFormat_asnbinary

open ASN.1 binary format

eMSSerialDataFormat_xml

open XML format

eMSSerialDataFormat_csv

csv (excel)

eMSSerialDataFormat_pepxml

pepXML format

eMSSerialDataFormat_xmlbz2

bzip2 XML format

Definition at line 63 of file MSSerialDataFormat_.hpp.

◆ EMSSpectrumFileType

Access to EMSSpectrumFileType's attributes (values, names) as defined in spec.

Enumerator eMSSpectrumFileType_dta eMSSpectrumFileType_dtablank eMSSpectrumFileType_dtaxml eMSSpectrumFileType_asc eMSSpectrumFileType_pkl eMSSpectrumFileType_pks eMSSpectrumFileType_sciex eMSSpectrumFileType_mgf eMSSpectrumFileType_unknown eMSSpectrumFileType_oms

asn.1 binary for iterative search

eMSSpectrumFileType_omx

xml for iterative search

eMSSpectrumFileType_xml

xml MSRequest

eMSSpectrumFileType_omxbz2

bzip2 omx file

Definition at line 63 of file MSSpectrumFileType_.hpp.

◆ EMSUserAnnot

MSHitSet annotation by end user.

Access to EMSUserAnnot's attributes (values, names) as defined in spec.

Enumerator eMSUserAnnot_none eMSUserAnnot_delete eMSUserAnnot_flag

Definition at line 64 of file MSUserAnnot_.hpp.

◆ EMSZdependence

what is the charge dependence of the mass tolerance?

Access to EMSZdependence's attributes (values, names) as defined in spec.

Enumerator eMSZdependence_independent

mass tol. invariant with charge

eMSZdependence_linearwithz

mass tol. scales with charge

eMSZdependence_max

Definition at line 64 of file MSZdependence_.hpp.

◆ CanGet() [1/4] bool CMSBioseqSet_Base::CanGet ( void ) const inline

Check if it is safe to call Get method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 158 of file MSBioseqSet_.hpp.

◆ CanGet() [2/4] bool CMSModSpecSet_Base::CanGet ( void ) const inline ◆ CanGet() [3/4] bool CMSSearchSettingsSet_Base::CanGet ( void ) const inline

Check if it is safe to call Get method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 158 of file MSSearchSettingsSet_.hpp.

◆ CanGet() [4/4] bool CMSSpectrumset_Base::CanGet ( void ) const inline

Check if it is safe to call Get method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 159 of file MSSpectrumset_.hpp.

◆ CanGetAbundance() bool CMSSpectrum_Base::CanGetAbundance ( void ) const inline

Check if it is safe to call GetAbundance method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 573 of file MSSpectrum_.hpp.

◆ CanGetAccession() bool CMSPepHit_Base::CanGetAccession ( void ) const inline ◆ CanGetAnnotation() bool CMSMZHit_Base::CanGetAnnotation ( void ) const inline ◆ CanGetAutomassadjust() bool CMSSearchSettings_Base::CanGetAutomassadjust ( void ) const inline ◆ CanGetAveragemass() [1/2] bool CMSMassSet_Base::CanGetAveragemass ( void ) const inline ◆ CanGetAveragemass() [2/2] bool CMSModSpec_Base::CanGetAveragemass ( void ) const inline ◆ CanGetBioseqs() bool CMSResponse_Base::CanGetBioseqs ( void ) const inline ◆ CanGetCalccharge() bool CMSChargeHandle_Base::CanGetCalccharge ( void ) const inline ◆ CanGetCalcplusone() bool CMSChargeHandle_Base::CanGetCalcplusone ( void ) const inline ◆ CanGetCharge() [1/3] bool CMSHits_Base::CanGetCharge ( void ) const inline ◆ CanGetCharge() [2/3] bool CMSMZHit_Base::CanGetCharge ( void ) const inline ◆ CanGetCharge() [3/3] bool CMSSpectrum_Base::CanGetCharge ( void ) const inline

Check if it is safe to call GetCharge method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 476 of file MSSpectrum_.hpp.

◆ CanGetChargehandling() bool CMSSearchSettings_Base::CanGetChargehandling ( void ) const inline ◆ CanGetConsidermult() bool CMSChargeHandle_Base::CanGetConsidermult ( void ) const inline ◆ CanGetCuthi() bool CMSSearchSettings_Base::CanGetCuthi ( void ) const inline ◆ CanGetCutinc() bool CMSSearchSettings_Base::CanGetCutinc ( void ) const inline ◆ CanGetCutlo() bool CMSSearchSettings_Base::CanGetCutlo ( void ) const inline ◆ CanGetCutoff() bool CMSSearchSettings_Base::CanGetCutoff ( void ) const inline ◆ CanGetDb() bool CMSSearchSettings_Base::CanGetDb ( void ) const inline ◆ CanGetDbversion() bool CMSResponse_Base::CanGetDbversion ( void ) const inline ◆ CanGetDefline() bool CMSPepHit_Base::CanGetDefline ( void ) const inline ◆ CanGetDoublenum() bool CMSSearchSettings_Base::CanGetDoublenum ( void ) const inline ◆ CanGetDoublewin() bool CMSSearchSettings_Base::CanGetDoublewin ( void ) const inline ◆ CanGetEmail() bool CMSResponse_Base::CanGetEmail ( void ) const inline ◆ CanGetEnzyme() bool CMSSearchSettings_Base::CanGetEnzyme ( void ) const inline ◆ CanGetError() [1/2] bool CMSHitSet_Base::CanGetError ( void ) const inline ◆ CanGetError() [2/2] bool CMSResponse_Base::CanGetError ( void ) const inline ◆ CanGetEvalue() bool CMSHits_Base::CanGetEvalue ( void ) const inline ◆ CanGetExactmass() bool CMSSearchSettings_Base::CanGetExactmass ( void ) const inline ◆ CanGetFixed() bool CMSSearchSettings_Base::CanGetFixed ( void ) const inline ◆ CanGetGi() bool CMSPepHit_Base::CanGetGi ( void ) const inline ◆ CanGetHitlistlen() bool CMSSearchSettings_Base::CanGetHitlistlen ( void ) const inline ◆ CanGetHits() bool CMSHitSet_Base::CanGetHits ( void ) const inline

Check if it is safe to call GetHits method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 497 of file MSHitSet_.hpp.

◆ CanGetHitsets() bool CMSResponse_Base::CanGetHitsets ( void ) const inline ◆ CanGetIds() [1/2] bool CMSHitSet_Base::CanGetIds ( void ) const inline

Check if it is safe to call GetIds method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 522 of file MSHitSet_.hpp.

◆ CanGetIds() [2/2] bool CMSSpectrum_Base::CanGetIds ( void ) const inline ◆ CanGetImmonium() bool CMSIon_Base::CanGetImmonium ( void ) const inline ◆ CanGetIncluderequest() bool CMSOutFile_Base::CanGetIncluderequest ( void ) const inline ◆ CanGetIndex() bool CMSMZHit_Base::CanGetIndex ( void ) const inline ◆ CanGetInfile() bool CMSInFile_Base::CanGetInfile ( void ) const inline ◆ CanGetInfiles() bool CMSSearchSettings_Base::CanGetInfiles ( void ) const inline

Check if it is safe to call GetInfiles method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 3957 of file MSSearchSettings_.hpp.

◆ CanGetInfiletype() bool CMSInFile_Base::CanGetInfiletype ( void ) const inline ◆ CanGetInternal() bool CMSIon_Base::CanGetInternal ( void ) const inline ◆ CanGetIon() bool CMSMZHit_Base::CanGetIon ( void ) const inline ◆ CanGetIonstosearch() bool CMSSearchSettings_Base::CanGetIonstosearch ( void ) const inline ◆ CanGetIscale() bool CMSSpectrum_Base::CanGetIscale ( void ) const inline ◆ CanGetIsotope() bool CMSIon_Base::CanGetIsotope ( void ) const inline ◆ CanGetIterativesettings() bool CMSSearchSettings_Base::CanGetIterativesettings ( void ) const inline ◆ CanGetLibaccession() bool CMSHits_Base::CanGetLibaccession ( void ) const inline ◆ CanGetLibnames() bool CMSLibrarySettings_Base::CanGetLibnames ( void ) const inline

Check if it is safe to call GetLibnames method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 325 of file MSLibrarySettings_.hpp.

◆ CanGetLibsearchsettings() bool CMSSearchSettings_Base::CanGetLibsearchsettings ( void ) const inline ◆ CanGetLomasscutoff() bool CMSSearchSettings_Base::CanGetLomasscutoff ( void ) const inline ◆ CanGetMass() bool CMSHits_Base::CanGetMass ( void ) const inline ◆ CanGetMassdiff() bool CMSIonAnnot_Base::CanGetMassdiff ( void ) const inline ◆ CanGetMaxcharge() bool CMSChargeHandle_Base::CanGetMaxcharge ( void ) const inline ◆ CanGetMaxmods() bool CMSSearchSettings_Base::CanGetMaxmods ( void ) const inline ◆ CanGetMaxnoenzyme() bool CMSSearchSettings_Base::CanGetMaxnoenzyme ( void ) const inline ◆ CanGetMaxproductcharge() bool CMSChargeHandle_Base::CanGetMaxproductcharge ( void ) const inline ◆ CanGetMaxproductions() bool CMSSearchSettings_Base::CanGetMaxproductions ( void ) const inline ◆ CanGetMincharge() bool CMSChargeHandle_Base::CanGetMincharge ( void ) const inline ◆ CanGetMinhit() bool CMSSearchSettings_Base::CanGetMinhit ( void ) const inline ◆ CanGetMinnoenzyme() bool CMSSearchSettings_Base::CanGetMinnoenzyme ( void ) const inline ◆ CanGetMinspectra() bool CMSSearchSettings_Base::CanGetMinspectra ( void ) const inline ◆ CanGetMissedcleave() bool CMSSearchSettings_Base::CanGetMissedcleave ( void ) const inline ◆ CanGetMissingisotope() bool CMSIonAnnot_Base::CanGetMissingisotope ( void ) const inline ◆ CanGetMod() bool CMSModSpec_Base::CanGetMod ( void ) const inline ◆ CanGetMods() bool CMSHits_Base::CanGetMods ( void ) const inline ◆ CanGetModset() bool CMSRequest_Base::CanGetModset ( void ) const inline ◆ CanGetModtype() bool CMSModHit_Base::CanGetModtype ( void ) const inline ◆ CanGetMonomass() [1/2] bool CMSMassSet_Base::CanGetMonomass ( void ) const inline ◆ CanGetMonomass() [2/2] bool CMSModSpec_Base::CanGetMonomass ( void ) const inline ◆ CanGetMoreion() bool CMSMZHit_Base::CanGetMoreion ( void ) const inline ◆ CanGetMoresettings() bool CMSRequest_Base::CanGetMoresettings ( void ) const inline ◆ CanGetMsmsppm() bool CMSSearchSettings_Base::CanGetMsmsppm ( void ) const inline ◆ CanGetMsmstol() bool CMSSearchSettings_Base::CanGetMsmstol ( void ) const inline ◆ CanGetMz() [1/2] bool CMSMZHit_Base::CanGetMz ( void ) const inline ◆ CanGetMz() [2/2] bool CMSSpectrum_Base::CanGetMz ( void ) const inline

Check if it is safe to call GetMz method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 548 of file MSSpectrum_.hpp.

◆ CanGetMzhits() bool CMSHits_Base::CanGetMzhits ( void ) const inline

Check if it is safe to call GetMzhits method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 894 of file MSHits_.hpp.

◆ CanGetN15mass() [1/2] bool CMSMassSet_Base::CanGetN15mass ( void ) const inline ◆ CanGetN15mass() [2/2] bool CMSModSpec_Base::CanGetN15mass ( void ) const inline ◆ CanGetName() [1/3] bool CMSModSpec_Base::CanGetName ( void ) const inline ◆ CanGetName() [2/3] bool CMSScoreSet_Base::CanGetName ( void ) const inline ◆ CanGetName() [3/3] bool CNameValue_Base::CanGetName ( void ) const inline ◆ CanGetNamevalue() [1/2] bool CMSHitSet_Base::CanGetNamevalue ( void ) const inline

Check if it is safe to call GetNamevalue method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 547 of file MSHitSet_.hpp.

◆ CanGetNamevalue() [2/2] bool CMSSpectrum_Base::CanGetNamevalue ( void ) const inline

Check if it is safe to call GetNamevalue method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 670 of file MSSpectrum_.hpp.

◆ CanGetNegative() bool CMSChargeHandle_Base::CanGetNegative ( void ) const inline

Check if it is safe to call GetNegative method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 904 of file MSChargeHandle_.hpp.

◆ CanGetNeutralloss() [1/2] bool CMSIon_Base::CanGetNeutralloss ( void ) const inline ◆ CanGetNeutralloss() [2/2] bool CMSModSpec_Base::CanGetNeutralloss ( void ) const inline ◆ CanGetNmethionine() bool CMSSearchSettings_Base::CanGetNmethionine ( void ) const inline ◆ CanGetNocorrelationscore() bool CMSSearchSettings_Base::CanGetNocorrelationscore ( void ) const inline ◆ CanGetNoprolineions() bool CMSSearchSettings_Base::CanGetNoprolineions ( void ) const inline ◆ CanGetNumber() [1/3] bool CMSHitSet_Base::CanGetNumber ( void ) const inline ◆ CanGetNumber() [2/3] bool CMSMZHit_Base::CanGetNumber ( void ) const inline ◆ CanGetNumber() [3/3] bool CMSSpectrum_Base::CanGetNumber ( void ) const inline ◆ CanGetNumisotopes() bool CMSSearchSettings_Base::CanGetNumisotopes ( void ) const inline ◆ CanGetOid() [1/3] bool CMSBioseq_Base::CanGetOid ( void ) const inline ◆ CanGetOid() [2/3] bool CMSHits_Base::CanGetOid ( void ) const inline ◆ CanGetOid() [3/3] bool CMSPepHit_Base::CanGetOid ( void ) const inline ◆ CanGetOthersettings() bool CMSSearchSettings_Base::CanGetOthersettings ( void ) const inline

Check if it is safe to call GetOthersettings method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 4335 of file MSSearchSettings_.hpp.

◆ CanGetOutfile() bool CMSOutFile_Base::CanGetOutfile ( void ) const inline ◆ CanGetOutfiles() bool CMSSearchSettings_Base::CanGetOutfiles ( void ) const inline

Check if it is safe to call GetOutfiles method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 3982 of file MSSearchSettings_.hpp.

◆ CanGetOutfiletype() bool CMSOutFile_Base::CanGetOutfiletype ( void ) const inline ◆ CanGetParent() bool CMSImmonium_Base::CanGetParent ( void ) const inline ◆ CanGetPephits() bool CMSHits_Base::CanGetPephits ( void ) const inline

Check if it is safe to call GetPephits method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 869 of file MSHits_.hpp.

◆ CanGetPepppm() bool CMSSearchSettings_Base::CanGetPepppm ( void ) const inline ◆ CanGetPepstart() [1/2] bool CMSHits_Base::CanGetPepstart ( void ) const inline ◆ CanGetPepstart() [2/2] bool CMSPepHit_Base::CanGetPepstart ( void ) const inline ◆ CanGetPepstop() [1/2] bool CMSHits_Base::CanGetPepstop ( void ) const inline ◆ CanGetPepstop() [2/2] bool CMSPepHit_Base::CanGetPepstop ( void ) const inline ◆ CanGetPepstring() bool CMSHits_Base::CanGetPepstring ( void ) const inline ◆ CanGetPeptol() bool CMSSearchSettings_Base::CanGetPeptol ( void ) const inline ◆ CanGetPlusone() bool CMSChargeHandle_Base::CanGetPlusone ( void ) const inline ◆ CanGetPrecursorcull() bool CMSSearchSettings_Base::CanGetPrecursorcull ( void ) const inline ◆ CanGetPrecursormz() bool CMSSpectrum_Base::CanGetPrecursormz ( void ) const inline ◆ CanGetPrecursorsearchtype() bool CMSSearchSettings_Base::CanGetPrecursorsearchtype ( void ) const inline ◆ CanGetPresearch() bool CMSLibrarySettings_Base::CanGetPresearch ( void ) const inline ◆ CanGetProbfollowingion() bool CMSSearchSettings_Base::CanGetProbfollowingion ( void ) const inline ◆ CanGetProdlesspre() bool CMSChargeHandle_Base::CanGetProdlesspre ( void ) const inline ◆ CanGetProduct() bool CMSImmonium_Base::CanGetProduct ( void ) const inline ◆ CanGetProductsearchtype() bool CMSSearchSettings_Base::CanGetProductsearchtype ( void ) const inline ◆ CanGetProtlength() [1/2] bool CMSHits_Base::CanGetProtlength ( void ) const inline ◆ CanGetProtlength() [2/2] bool CMSPepHit_Base::CanGetProtlength ( void ) const inline ◆ CanGetPseudocount() bool CMSSearchSettings_Base::CanGetPseudocount ( void ) const inline ◆ CanGetPsi_ms() bool CMSModSpec_Base::CanGetPsi_ms ( void ) const inline ◆ CanGetPvalue() bool CMSHits_Base::CanGetPvalue ( void ) const inline ◆ CanGetQtofscore() bool CMSLibrarySettings_Base::CanGetQtofscore ( void ) const inline ◆ CanGetReplacethresh() bool CMSIterativeSettings_Base::CanGetReplacethresh ( void ) const inline ◆ CanGetReportedhitcount() bool CMSSearchSettings_Base::CanGetReportedhitcount ( void ) const inline ◆ CanGetRequest() bool CMSSearch_Base::CanGetRequest ( void ) const inline ◆ CanGetResearchthresh() bool CMSIterativeSettings_Base::CanGetResearchthresh ( void ) const inline ◆ CanGetResidues() bool CMSModSpec_Base::CanGetResidues ( void ) const inline

Check if it is safe to call GetResidues method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 820 of file MSModSpec_.hpp.

◆ CanGetResponse() bool CMSSearch_Base::CanGetResponse ( void ) const inline

Check if it is safe to call GetResponse method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 223 of file MSSearch_.hpp.

◆ CanGetReversed() bool CMSPepHit_Base::CanGetReversed ( void ) const inline ◆ CanGetReversesearch() bool CMSSearchSettings_Base::CanGetReversesearch ( void ) const inline ◆ CanGetRid() [1/2] bool CMSRequest_Base::CanGetRid ( void ) const inline ◆ CanGetRid() [2/2] bool CMSResponse_Base::CanGetRid ( void ) const inline ◆ CanGetScale() [1/2] bool CMSResponse_Base::CanGetScale ( void ) const inline ◆ CanGetScale() [2/2] bool CMSSearchSettings_Base::CanGetScale ( void ) const inline ◆ CanGetScores() bool CMSHits_Base::CanGetScores ( void ) const inline

Check if it is safe to call GetScores method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 1273 of file MSHits_.hpp.

◆ CanGetSearchb1() bool CMSSearchSettings_Base::CanGetSearchb1 ( void ) const inline ◆ CanGetSearchctermproduct() bool CMSSearchSettings_Base::CanGetSearchctermproduct ( void ) const inline ◆ CanGetSeq() bool CMSBioseq_Base::CanGetSeq ( void ) const inline

Check if it is safe to call GetSeq method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 253 of file MSBioseq_.hpp.

◆ CanGetSettingid() [1/2] bool CMSHitSet_Base::CanGetSettingid ( void ) const inline ◆ CanGetSettingid() [2/2] bool CMSSearchSettings_Base::CanGetSettingid ( void ) const inline ◆ CanGetSettings() bool CMSRequest_Base::CanGetSettings ( void ) const inline ◆ CanGetSinglenum() bool CMSSearchSettings_Base::CanGetSinglenum ( void ) const inline ◆ CanGetSinglewin() bool CMSSearchSettings_Base::CanGetSinglewin ( void ) const inline ◆ CanGetSite() bool CMSModHit_Base::CanGetSite ( void ) const inline ◆ CanGetSpectra() bool CMSRequest_Base::CanGetSpectra ( void ) const inline

Check if it is safe to call GetSpectra method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 338 of file MSRequest_.hpp.

◆ CanGetStart() bool CMSPepHit_Base::CanGetStart ( void ) const inline ◆ CanGetStop() bool CMSPepHit_Base::CanGetStop ( void ) const inline ◆ CanGetSubsetthresh() bool CMSIterativeSettings_Base::CanGetSubsetthresh ( void ) const inline ◆ CanGetSuspect() bool CMSIonAnnot_Base::CanGetSuspect ( void ) const inline ◆ CanGetTaxids() bool CMSSearchSettings_Base::CanGetTaxids ( void ) const inline

Check if it is safe to call GetTaxids method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 3428 of file MSSearchSettings_.hpp.

◆ CanGetTheomass() bool CMSHits_Base::CanGetTheomass ( void ) const inline ◆ CanGetTophitnum() bool CMSSearchSettings_Base::CanGetTophitnum ( void ) const inline ◆ CanGetType() bool CMSModSpec_Base::CanGetType ( void ) const inline ◆ CanGetUnimod() bool CMSModSpec_Base::CanGetUnimod ( void ) const inline ◆ CanGetUseomssascore() bool CMSLibrarySettings_Base::CanGetUseomssascore ( void ) const inline ◆ CanGetUserannotation() bool CMSHitSet_Base::CanGetUserannotation ( void ) const inline ◆ CanGetUsereplicatescore() bool CMSLibrarySettings_Base::CanGetUsereplicatescore ( void ) const inline ◆ CanGetUsermods() bool CMSSearchSettings_Base::CanGetUsermods ( void ) const inline ◆ CanGetValue() [1/2] bool CMSScoreSet_Base::CanGetValue ( void ) const inline ◆ CanGetValue() [2/2] bool CNameValue_Base::CanGetValue ( void ) const inline ◆ CanGetVariable() bool CMSSearchSettings_Base::CanGetVariable ( void ) const inline ◆ CanGetVersion() bool CMSResponse_Base::CanGetVersion ( void ) const inline ◆ CanGetZdep() bool CMSSearchSettings_Base::CanGetZdep ( void ) const inline ◆ CMSBioseq() [1/2] ◆ CMSBioseq() [2/2] CMSBioseq::CMSBioseq ( void ) inline

Definition at line 86 of file MSBioseq.hpp.

◆ CMSBioseq_Base() [1/2] ◆ CMSBioseq_Base() [2/2] ◆ CMSBioseqSet_Base() [1/2] ◆ CMSBioseqSet_Base() [2/2] ◆ CMSChargeHandle() [1/2] ◆ CMSChargeHandle() [2/2] ◆ CMSChargeHandle_Base() [1/2] ◆ CMSChargeHandle_Base() [2/2] ◆ CMSHits_Base() [1/2] ◆ CMSHits_Base() [2/2] ◆ CMSHitSet() [1/2] ◆ CMSHitSet() [2/2] CMSHitSet::CMSHitSet ( void ) inline

Definition at line 86 of file MSHitSet.hpp.

◆ CMSHitSet_Base() [1/2] ◆ CMSHitSet_Base() [2/2] ◆ CMSImmonium() [1/2] ◆ CMSImmonium() [2/2] CMSImmonium::CMSImmonium ( void ) inline

Definition at line 86 of file MSImmonium.hpp.

◆ CMSImmonium_Base() [1/2] ◆ CMSImmonium_Base() [2/2] ◆ CMSInFile() [1/2] ◆ CMSInFile() [2/2] CMSInFile::CMSInFile ( void ) inline

Definition at line 86 of file MSInFile.hpp.

◆ CMSInFile_Base() [1/2] ◆ CMSInFile_Base() [2/2] ◆ CMSIon() [1/2] ◆ CMSIon() [2/2] ◆ CMSIon_Base() [1/2] ◆ CMSIon_Base() [2/2] ◆ CMSIonAnnot() [1/2] ◆ CMSIonAnnot() [2/2] CMSIonAnnot::CMSIonAnnot ( void ) inline

Definition at line 86 of file MSIonAnnot.hpp.

◆ CMSIonAnnot_Base() [1/2] ◆ CMSIonAnnot_Base() [2/2] ◆ CMSIterativeSettings() [1/2] ◆ CMSIterativeSettings() [2/2] ◆ CMSIterativeSettings_Base() [1/2] ◆ CMSIterativeSettings_Base() [2/2] END_CLASS_INFO CMSIterativeSettings_Base::CMSIterativeSettings_Base ( void ) ◆ CMSLibrarySettings() [1/2] ◆ CMSLibrarySettings() [2/2] ◆ CMSLibrarySettings_Base() [1/2] ◆ CMSLibrarySettings_Base() [2/2] END_CLASS_INFO CMSLibrarySettings_Base::CMSLibrarySettings_Base ( void ) ◆ CMSMassSet() [1/2] ◆ CMSMassSet() [2/2] CMSMassSet::CMSMassSet ( void ) inline

Definition at line 86 of file MSMassSet.hpp.

◆ CMSMassSet_Base() [1/2] ◆ CMSMassSet_Base() [2/2] ◆ CMSModHit() [1/2] ◆ CMSModHit() [2/2] CMSModHit::CMSModHit ( void ) inline

Definition at line 86 of file MSModHit.hpp.

◆ CMSModHit_Base() [1/2] ◆ CMSModHit_Base() [2/2] ◆ CMSModSpec() [1/2] ◆ CMSModSpec() [2/2] CMSModSpec::CMSModSpec ( void ) inline

Definition at line 86 of file MSModSpec.hpp.

◆ CMSModSpec_Base() [1/2] ◆ CMSModSpec_Base() [2/2] ◆ CMSModSpecSet_Base() [1/2] ◆ CMSModSpecSet_Base() [2/2] ◆ CMSMZHit() [1/2] ◆ CMSMZHit() [2/2] CMSMZHit::CMSMZHit ( void ) inline

Definition at line 86 of file MSMZHit.hpp.

◆ CMSMZHit_Base() [1/2] ◆ CMSMZHit_Base() [2/2] ◆ CMSOutFile() [1/2] ◆ CMSOutFile() [2/2] CMSOutFile::CMSOutFile ( void ) inline

Definition at line 86 of file MSOutFile.hpp.

◆ CMSOutFile_Base() [1/2] ◆ CMSOutFile_Base() [2/2] ◆ CMSPepHit() [1/2] ◆ CMSPepHit() [2/2] CMSPepHit::CMSPepHit ( void ) inline

Definition at line 86 of file MSPepHit.hpp.

◆ CMSPepHit_Base() [1/2] ◆ CMSPepHit_Base() [2/2] ◆ CMSRequest_Base() [1/2] ◆ CMSRequest_Base() [2/2] ◆ CMSResponse_Base() [1/2] ◆ CMSResponse_Base() [2/2] ◆ CMSScoreSet() [1/2] ◆ CMSScoreSet() [2/2] CMSScoreSet::CMSScoreSet ( void ) inline

Definition at line 86 of file MSScoreSet.hpp.

◆ CMSScoreSet_Base() [1/2] ◆ CMSScoreSet_Base() [2/2] ◆ CMSSearch_Base() [1/2] ◆ CMSSearch_Base() [2/2] ◆ CMSSearchSettings_Base() [1/2] ◆ CMSSearchSettings_Base() [2/2] END_CLASS_INFO CMSSearchSettings_Base::CMSSearchSettings_Base ( void ) ◆ CMSSearchSettingsSet() [1/2] ◆ CMSSearchSettingsSet() [2/2] ◆ CMSSearchSettingsSet_Base() [1/2] ◆ CMSSearchSettingsSet_Base() [2/2] END_CLASS_INFO CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base ( void ) ◆ CMSSpectrum() [1/2] ◆ CMSSpectrum() [2/2] CMSSpectrum::CMSSpectrum ( void ) inline

Definition at line 86 of file MSSpectrum.hpp.

◆ CMSSpectrum_Base() [1/2] ◆ CMSSpectrum_Base() [2/2] ◆ CMSSpectrumset() [1/2] ◆ CMSSpectrumset() [2/2] CMSSpectrumset::CMSSpectrumset ( void ) inline

Definition at line 86 of file MSSpectrumset.hpp.

◆ CMSSpectrumset_Base() [1/2] ◆ CMSSpectrumset_Base() [2/2] ◆ CNameValue() [1/2] ◆ CNameValue() [2/2] CNameValue::CNameValue ( void ) inline

Definition at line 86 of file NameValue.hpp.

◆ CNameValue_Base() [1/2] ◆ CNameValue_Base() [2/2] ◆ DECLARE_INTERNAL_TYPE_INFO() [1/27] CMSBioseq_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [2/27] CMSBioseqSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [3/27] CMSChargeHandle_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [4/27] CMSHits_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [5/27] CMSHitSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [6/27] CMSImmonium_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [7/27] CMSInFile_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [8/27] CMSIon_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [9/27] CMSIonAnnot_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [10/27] CMSIterativeSettings_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [11/27] CMSLibrarySettings_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [12/27] CMSMassSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [13/27] CMSModHit_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [14/27] CMSModSpec_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [15/27] CMSModSpecSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [16/27] CMSMZHit_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [17/27] CMSOutFile_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [18/27] CMSPepHit_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [19/27] CMSRequest_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [20/27] CMSResponse_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [21/27] CMSScoreSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [22/27] CMSSearch_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [23/27] CMSSearchSettings_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [24/27] CMSSearchSettingsSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [25/27] CMSSpectrum_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [26/27] CMSSpectrumset_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [27/27] CNameValue_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ Get() [1/4] ◆ Get() [2/4] ◆ Get() [3/4] ◆ Get() [4/4] ◆ GetAbundance() ◆ GetAccession() ◆ GetAnnotation() ◆ GetAutomassadjust() ◆ GetAveragemass() [1/2] ◆ GetAveragemass() [2/2] ◆ GetBioseqs() ◆ GetCalccharge() ◆ GetCalcplusone() ◆ GetCharge() [1/3] ◆ GetCharge() [2/3] ◆ GetCharge() [3/3] ◆ GetChargehandling() ◆ GetConsidermult() ◆ GetCuthi() ◆ GetCutinc() ◆ GetCutlo() ◆ GetCutoff() ◆ GetDb() ◆ GetDbversion() ◆ GetDefline() ◆ GetDoublenum() ◆ GetDoublewin() ◆ GetEmail() ◆ GetEnzyme() ◆ GetError() [1/2] ◆ GetError() [2/2] ◆ GetEvalue() ◆ GetExactmass() ◆ GetFixed() ◆ GetGi() ◆ GetHitlistlen() ◆ GetHits() ◆ GetHitsets() ◆ GetIds() [1/2] ◆ GetIds() [2/2] ◆ GetImmonium() ◆ GetIncluderequest() ◆ GetIndex() ◆ GetInfile() ◆ GetInfiles() ◆ GetInfiletype() ◆ GetInternal() ◆ GetIon() ◆ GetIonstosearch() ◆ GetIscale() ◆ GetIsotope() ◆ GetIterativesettings() ◆ GetLibaccession() ◆ GetLibnames() ◆ GetLibsearchsettings() ◆ GetLomasscutoff() ◆ GetMass() ◆ GetMassdiff() ◆ GetMaxcharge() ◆ GetMaxmods() ◆ GetMaxnoenzyme() ◆ GetMaxproductcharge() ◆ GetMaxproductions() ◆ GetMincharge() ◆ GetMinhit() ◆ GetMinnoenzyme() ◆ GetMinspectra() ◆ GetMissedcleave() ◆ GetMissingisotope() ◆ GetMod() ◆ GetMods() ◆ GetModset() ◆ GetModtype() ◆ GetMonomass() [1/2] ◆ GetMonomass() [2/2] ◆ GetMoreion() ◆ GetMoresettings() ◆ GetMsmsppm() ◆ GetMsmstol() ◆ GetMz() [1/2] ◆ GetMz() [2/2] ◆ GetMzhits() ◆ GetN15mass() [1/2] ◆ GetN15mass() [2/2] ◆ GetName() [1/3] ◆ GetName() [2/3] ◆ GetName() [3/3] ◆ GetNamevalue() [1/2] ◆ GetNamevalue() [2/2] ◆ GetNegative() ◆ GetNeutralloss() [1/2] ◆ GetNeutralloss() [2/2] ◆ GetNmethionine() ◆ GetNocorrelationscore() ◆ GetNoprolineions() ◆ GetNumber() [1/3] ◆ GetNumber() [2/3] ◆ GetNumber() [3/3] ◆ GetNumisotopes() ◆ GetOid() [1/3] ◆ GetOid() [2/3] ◆ GetOid() [3/3] ◆ GetOthersettings() ◆ GetOutfile() ◆ GetOutfiles() ◆ GetOutfiletype() ◆ GetParent() ◆ GetPephits() ◆ GetPepppm() ◆ GetPepstart() [1/2] ◆ GetPepstart() [2/2] ◆ GetPepstop() [1/2] ◆ GetPepstop() [2/2] ◆ GetPepstring() ◆ GetPeptol() ◆ GetPlusone() ◆ GetPrecursorcull() ◆ GetPrecursormz() ◆ GetPrecursorsearchtype() ◆ GetPresearch() ◆ GetProbfollowingion() ◆ GetProdlesspre() ◆ GetProduct() ◆ GetProductsearchtype() ◆ GetProtlength() [1/2] ◆ GetProtlength() [2/2] ◆ GetPseudocount() ◆ GetPsi_ms() ◆ GetPvalue() ◆ GetQtofscore() ◆ GetReplacethresh() ◆ GetReportedhitcount() ◆ GetRequest() ◆ GetResearchthresh() ◆ GetResidues() ◆ GetResponse() ◆ GetReversed() ◆ GetReversesearch() ◆ GetRid() [1/2] ◆ GetRid() [2/2] ◆ GetScale() [1/2] ◆ GetScale() [2/2] ◆ GetScores() ◆ GetSearchb1() ◆ GetSearchctermproduct() ◆ GetSeq() ◆ GetSettingid() [1/2] ◆ GetSettingid() [2/2] ◆ GetSettings() ◆ GetSinglenum() ◆ GetSinglewin() ◆ GetSite() ◆ GetSpectra() ◆ GetStart() ◆ GetStop() ◆ GetSubsetthresh() ◆ GetSuspect() ◆ GetTaxids() ◆ GetTheomass() ◆ GetTophitnum() ◆ GetType() ◆ GetUnimod() ◆ GetUseomssascore() ◆ GetUserannotation() ◆ GetUsereplicatescore() ◆ GetUsermods() ◆ GetValue() [1/2] ◆ GetValue() [2/2] ◆ GetVariable() ◆ GetVersion() ◆ GetZdep() ◆ IsSet() [1/4] bool CMSBioseqSet_Base::IsSet ( void ) const inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSBioseq > > Tdata'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 152 of file MSBioseqSet_.hpp.

References CMSBioseqSet_Base::m_set_State.

◆ IsSet() [2/4] bool CMSModSpecSet_Base::IsSet ( void ) const inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSModSpec > > Tdata'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 153 of file MSModSpecSet_.hpp.

References CMSModSpecSet_Base::m_set_State.

◆ IsSet() [3/4] bool CMSSearchSettingsSet_Base::IsSet ( void ) const inline ◆ IsSet() [4/4] bool CMSSpectrumset_Base::IsSet ( void ) const inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSSpectrum > > Tdata'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 153 of file MSSpectrumset_.hpp.

References CMSSpectrumset_Base::m_set_State.

◆ IsSetAbundance() bool CMSSpectrum_Base::IsSetAbundance ( void ) const inline

scaled product abundance Check if a value has been assigned to Abundance data member.

Data member Abundance is mandatory; its type is defined as 'typedef vector< int > TAbundance'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 567 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

◆ IsSetAccession() bool CMSPepHit_Base::IsSetAccession ( void ) const inline ◆ IsSetAnnotation() bool CMSMZHit_Base::IsSetAnnotation ( void ) const inline ◆ IsSetAutomassadjust() bool CMSSearchSettings_Base::IsSetAutomassadjust ( void ) const inline ◆ IsSetAveragemass() [1/2] bool CMSMassSet_Base::IsSetAveragemass ( void ) const inline ◆ IsSetAveragemass() [2/2] bool CMSModSpec_Base::IsSetAveragemass ( void ) const inline ◆ IsSetBioseqs() bool CMSResponse_Base::IsSetBioseqs ( void ) const inline ◆ IsSetCalccharge() bool CMSChargeHandle_Base::IsSetCalccharge ( void ) const inline ◆ IsSetCalcplusone() bool CMSChargeHandle_Base::IsSetCalcplusone ( void ) const inline ◆ IsSetCharge() [1/3] bool CMSHits_Base::IsSetCharge ( void ) const inline ◆ IsSetCharge() [2/3] bool CMSMZHit_Base::IsSetCharge ( void ) const inline ◆ IsSetCharge() [3/3] bool CMSSpectrum_Base::IsSetCharge ( void ) const inline

may be more than one if unknown Check if a value has been assigned to Charge data member.

Data member Charge is mandatory; its type is defined as 'typedef list< int > TCharge'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 470 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

◆ IsSetChargehandling() bool CMSSearchSettings_Base::IsSetChargehandling ( void ) const inline ◆ IsSetConsidermult() bool CMSChargeHandle_Base::IsSetConsidermult ( void ) const inline ◆ IsSetCuthi() bool CMSSearchSettings_Base::IsSetCuthi ( void ) const inline ◆ IsSetCutinc() bool CMSSearchSettings_Base::IsSetCutinc ( void ) const inline ◆ IsSetCutlo() bool CMSSearchSettings_Base::IsSetCutlo ( void ) const inline ◆ IsSetCutoff() bool CMSSearchSettings_Base::IsSetCutoff ( void ) const inline ◆ IsSetDb() bool CMSSearchSettings_Base::IsSetDb ( void ) const inline ◆ IsSetDbversion() bool CMSResponse_Base::IsSetDbversion ( void ) const inline ◆ IsSetDefline() bool CMSPepHit_Base::IsSetDefline ( void ) const inline ◆ IsSetDoublenum() bool CMSSearchSettings_Base::IsSetDoublenum ( void ) const inline ◆ IsSetDoublewin() bool CMSSearchSettings_Base::IsSetDoublewin ( void ) const inline ◆ IsSetEmail() bool CMSResponse_Base::IsSetEmail ( void ) const inline ◆ IsSetEnzyme() bool CMSSearchSettings_Base::IsSetEnzyme ( void ) const inline ◆ IsSetError() [1/2] bool CMSHitSet_Base::IsSetError ( void ) const inline ◆ IsSetError() [2/2] bool CMSResponse_Base::IsSetError ( void ) const inline ◆ IsSetEvalue() bool CMSHits_Base::IsSetEvalue ( void ) const inline ◆ IsSetExactmass() bool CMSSearchSettings_Base::IsSetExactmass ( void ) const inline ◆ IsSetFixed() bool CMSSearchSettings_Base::IsSetFixed ( void ) const inline ◆ IsSetGi() bool CMSPepHit_Base::IsSetGi ( void ) const inline ◆ IsSetHitlistlen() bool CMSSearchSettings_Base::IsSetHitlistlen ( void ) const inline ◆ IsSetHits() bool CMSHitSet_Base::IsSetHits ( void ) const inline

set of hit to spectrum Check if a value has been assigned to Hits data member.

Data member Hits is optional; its type is defined as 'typedef vector< CRef< CMSHits > > THits'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 491 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

◆ IsSetHitsets() bool CMSResponse_Base::IsSetHitsets ( void ) const inline

hits grouped by spectrum Check if a value has been assigned to Hitsets data member.

Data member Hitsets is mandatory; its type is defined as 'typedef vector< CRef< CMSHitSet > > THitsets'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 454 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

◆ IsSetIds() [1/2] bool CMSHitSet_Base::IsSetIds ( void ) const inline

filenames or other ids of spectra searched Check if a value has been assigned to Ids data member.

Data member Ids is optional; its type is defined as 'typedef list< string > TIds'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 516 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

◆ IsSetIds() [2/2] bool CMSSpectrum_Base::IsSetIds ( void ) const inline

ids/filenames Check if a value has been assigned to Ids data member.

Data member Ids is optional; its type is defined as 'typedef list< string > TIds'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 639 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

◆ IsSetImmonium() bool CMSIon_Base::IsSetImmonium ( void ) const inline ◆ IsSetIncluderequest() bool CMSOutFile_Base::IsSetIncluderequest ( void ) const inline ◆ IsSetIndex() bool CMSMZHit_Base::IsSetIndex ( void ) const inline ◆ IsSetInfile() bool CMSInFile_Base::IsSetInfile ( void ) const inline ◆ IsSetInfiles() bool CMSSearchSettings_Base::IsSetInfiles ( void ) const inline

input files Check if a value has been assigned to Infiles data member.

Data member Infiles is optional; its type is defined as 'typedef list< CRef< CMSInFile > > TInfiles'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 3951 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

◆ IsSetInfiletype() bool CMSInFile_Base::IsSetInfiletype ( void ) const inline ◆ IsSetInternal() bool CMSIon_Base::IsSetInternal ( void ) const inline ◆ IsSetIon() bool CMSMZHit_Base::IsSetIon ( void ) const inline ◆ IsSetIonstosearch() bool CMSSearchSettings_Base::IsSetIonstosearch ( void ) const inline

which ions to search? Check if a value has been assigned to Ionstosearch data member.

Data member Ionstosearch is mandatory; its type is defined as 'typedef list< int > TIonstosearch'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 2392 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

◆ IsSetIscale() bool CMSSpectrum_Base::IsSetIscale ( void ) const inline ◆ IsSetIsotope() bool CMSIon_Base::IsSetIsotope ( void ) const inline ◆ IsSetIterativesettings() bool CMSSearchSettings_Base::IsSetIterativesettings ( void ) const inline ◆ IsSetLibaccession() bool CMSHits_Base::IsSetLibaccession ( void ) const inline ◆ IsSetLibnames() bool CMSLibrarySettings_Base::IsSetLibnames ( void ) const inline

names of search libraries Check if a value has been assigned to Libnames data member.

Data member Libnames is mandatory; its type is defined as 'typedef list< string > TLibnames'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 319 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State.

◆ IsSetLibsearchsettings() bool CMSSearchSettings_Base::IsSetLibsearchsettings ( void ) const inline ◆ IsSetLomasscutoff() bool CMSSearchSettings_Base::IsSetLomasscutoff ( void ) const inline ◆ IsSetMass() bool CMSHits_Base::IsSetMass ( void ) const inline ◆ IsSetMassdiff() bool CMSIonAnnot_Base::IsSetMassdiff ( void ) const inline ◆ IsSetMaxcharge() bool CMSChargeHandle_Base::IsSetMaxcharge ( void ) const inline ◆ IsSetMaxmods() bool CMSSearchSettings_Base::IsSetMaxmods ( void ) const inline ◆ IsSetMaxnoenzyme() bool CMSSearchSettings_Base::IsSetMaxnoenzyme ( void ) const inline ◆ IsSetMaxproductcharge() bool CMSChargeHandle_Base::IsSetMaxproductcharge ( void ) const inline ◆ IsSetMaxproductions() bool CMSSearchSettings_Base::IsSetMaxproductions ( void ) const inline ◆ IsSetMincharge() bool CMSChargeHandle_Base::IsSetMincharge ( void ) const inline ◆ IsSetMinhit() bool CMSSearchSettings_Base::IsSetMinhit ( void ) const inline ◆ IsSetMinnoenzyme() bool CMSSearchSettings_Base::IsSetMinnoenzyme ( void ) const inline ◆ IsSetMinspectra() bool CMSSearchSettings_Base::IsSetMinspectra ( void ) const inline ◆ IsSetMissedcleave() bool CMSSearchSettings_Base::IsSetMissedcleave ( void ) const inline ◆ IsSetMissingisotope() bool CMSIonAnnot_Base::IsSetMissingisotope ( void ) const inline ◆ IsSetMod() bool CMSModSpec_Base::IsSetMod ( void ) const inline ◆ IsSetMods() bool CMSHits_Base::IsSetMods ( void ) const inline

modifications to sequence Check if a value has been assigned to Mods data member.

Data member Mods is optional; its type is defined as 'typedef list< CRef< CMSModHit > > TMods'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 1007 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

◆ IsSetModset() bool CMSRequest_Base::IsSetModset ( void ) const inline ◆ IsSetModtype() bool CMSModHit_Base::IsSetModtype ( void ) const inline ◆ IsSetMonomass() [1/2] bool CMSMassSet_Base::IsSetMonomass ( void ) const inline ◆ IsSetMonomass() [2/2] bool CMSModSpec_Base::IsSetMonomass ( void ) const inline ◆ IsSetMoreion() bool CMSMZHit_Base::IsSetMoreion ( void ) const inline ◆ IsSetMoresettings() bool CMSRequest_Base::IsSetMoresettings ( void ) const inline ◆ IsSetMsmsppm() bool CMSSearchSettings_Base::IsSetMsmsppm ( void ) const inline ◆ IsSetMsmstol() bool CMSSearchSettings_Base::IsSetMsmstol ( void ) const inline ◆ IsSetMz() [1/2] bool CMSMZHit_Base::IsSetMz ( void ) const inline ◆ IsSetMz() [2/2] bool CMSSpectrum_Base::IsSetMz ( void ) const inline

scaled product m/z Check if a value has been assigned to Mz data member.

Data member Mz is mandatory; its type is defined as 'typedef vector< int > TMz'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 542 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

◆ IsSetMzhits() bool CMSHits_Base::IsSetMzhits ( void ) const inline

ions hit Check if a value has been assigned to Mzhits data member.

Data member Mzhits is optional; its type is defined as 'typedef list< CRef< CMSMZHit > > TMzhits'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 888 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

◆ IsSetN15mass() [1/2] bool CMSMassSet_Base::IsSetN15mass ( void ) const inline ◆ IsSetN15mass() [2/2] bool CMSModSpec_Base::IsSetN15mass ( void ) const inline ◆ IsSetName() [1/3] bool CMSModSpec_Base::IsSetName ( void ) const inline ◆ IsSetName() [2/3] bool CMSScoreSet_Base::IsSetName ( void ) const inline ◆ IsSetName() [3/3] bool CNameValue_Base::IsSetName ( void ) const inline ◆ IsSetNamevalue() [1/2] bool CMSHitSet_Base::IsSetNamevalue ( void ) const inline

extra info: retention times, etc.

Check if a value has been assigned to Namevalue data member.

Data member Namevalue is optional; its type is defined as 'typedef list< CRef< CNameValue > > TNamevalue'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 541 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

◆ IsSetNamevalue() [2/2] bool CMSSpectrum_Base::IsSetNamevalue ( void ) const inline

extra info: retention times, etc.

Check if a value has been assigned to Namevalue data member.

Data member Namevalue is optional; its type is defined as 'typedef list< CRef< CNameValue > > TNamevalue'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 664 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

◆ IsSetNegative() bool CMSChargeHandle_Base::IsSetNegative ( void ) const inline ◆ IsSetNeutralloss() [1/2] bool CMSIon_Base::IsSetNeutralloss ( void ) const inline ◆ IsSetNeutralloss() [2/2] bool CMSModSpec_Base::IsSetNeutralloss ( void ) const inline ◆ IsSetNmethionine() bool CMSSearchSettings_Base::IsSetNmethionine ( void ) const inline ◆ IsSetNocorrelationscore() bool CMSSearchSettings_Base::IsSetNocorrelationscore ( void ) const inline ◆ IsSetNoprolineions() bool CMSSearchSettings_Base::IsSetNoprolineions ( void ) const inline

which ions to use no proline rule Check if a value has been assigned to Noprolineions data member.

Data member Noprolineions is optional; its type is defined as 'typedef list< int > TNoprolineions'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 4257 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

◆ IsSetNumber() [1/3] bool CMSHitSet_Base::IsSetNumber ( void ) const inline ◆ IsSetNumber() [2/3] bool CMSMZHit_Base::IsSetNumber ( void ) const inline ◆ IsSetNumber() [3/3] bool CMSSpectrum_Base::IsSetNumber ( void ) const inline ◆ IsSetNumisotopes() bool CMSSearchSettings_Base::IsSetNumisotopes ( void ) const inline ◆ IsSetOid() [1/3] bool CMSBioseq_Base::IsSetOid ( void ) const inline ◆ IsSetOid() [2/3] bool CMSHits_Base::IsSetOid ( void ) const inline ◆ IsSetOid() [3/3] bool CMSPepHit_Base::IsSetOid ( void ) const inline ◆ IsSetOthersettings() bool CMSSearchSettings_Base::IsSetOthersettings ( void ) const inline

extra search settings Check if a value has been assigned to Othersettings data member.

Data member Othersettings is optional; its type is defined as 'typedef list< CRef< CNameValue > > TOthersettings'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 4329 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

◆ IsSetOutfile() bool CMSOutFile_Base::IsSetOutfile ( void ) const inline ◆ IsSetOutfiles() bool CMSSearchSettings_Base::IsSetOutfiles ( void ) const inline

output files Check if a value has been assigned to Outfiles data member.

Data member Outfiles is optional; its type is defined as 'typedef list< CRef< CMSOutFile > > TOutfiles'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 3976 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

◆ IsSetOutfiletype() bool CMSOutFile_Base::IsSetOutfiletype ( void ) const inline ◆ IsSetParent() bool CMSImmonium_Base::IsSetParent ( void ) const inline ◆ IsSetPephits() bool CMSHits_Base::IsSetPephits ( void ) const inline

peptides that match this hit Check if a value has been assigned to Pephits data member.

Data member Pephits is mandatory; its type is defined as 'typedef list< CRef< CMSPepHit > > TPephits'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 863 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

◆ IsSetPepppm() bool CMSSearchSettings_Base::IsSetPepppm ( void ) const inline ◆ IsSetPepstart() [1/2] bool CMSHits_Base::IsSetPepstart ( void ) const inline ◆ IsSetPepstart() [2/2] bool CMSPepHit_Base::IsSetPepstart ( void ) const inline ◆ IsSetPepstop() [1/2] bool CMSHits_Base::IsSetPepstop ( void ) const inline ◆ IsSetPepstop() [2/2] bool CMSPepHit_Base::IsSetPepstop ( void ) const inline ◆ IsSetPepstring() bool CMSHits_Base::IsSetPepstring ( void ) const inline ◆ IsSetPeptol() bool CMSSearchSettings_Base::IsSetPeptol ( void ) const inline ◆ IsSetPlusone() bool CMSChargeHandle_Base::IsSetPlusone ( void ) const inline ◆ IsSetPrecursorcull() bool CMSSearchSettings_Base::IsSetPrecursorcull ( void ) const inline ◆ IsSetPrecursormz() bool CMSSpectrum_Base::IsSetPrecursormz ( void ) const inline ◆ IsSetPrecursorsearchtype() bool CMSSearchSettings_Base::IsSetPrecursorsearchtype ( void ) const inline ◆ IsSetPresearch() bool CMSLibrarySettings_Base::IsSetPresearch ( void ) const inline ◆ IsSetProbfollowingion() bool CMSSearchSettings_Base::IsSetProbfollowingion ( void ) const inline ◆ IsSetProdlesspre() bool CMSChargeHandle_Base::IsSetProdlesspre ( void ) const inline ◆ IsSetProduct() bool CMSImmonium_Base::IsSetProduct ( void ) const inline ◆ IsSetProductsearchtype() bool CMSSearchSettings_Base::IsSetProductsearchtype ( void ) const inline ◆ IsSetProtlength() [1/2] bool CMSHits_Base::IsSetProtlength ( void ) const inline ◆ IsSetProtlength() [2/2] bool CMSPepHit_Base::IsSetProtlength ( void ) const inline ◆ IsSetPseudocount() bool CMSSearchSettings_Base::IsSetPseudocount ( void ) const inline ◆ IsSetPsi_ms() bool CMSModSpec_Base::IsSetPsi_ms ( void ) const inline ◆ IsSetPvalue() bool CMSHits_Base::IsSetPvalue ( void ) const inline ◆ IsSetQtofscore() bool CMSLibrarySettings_Base::IsSetQtofscore ( void ) const inline ◆ IsSetReplacethresh() bool CMSIterativeSettings_Base::IsSetReplacethresh ( void ) const inline ◆ IsSetReportedhitcount() bool CMSSearchSettings_Base::IsSetReportedhitcount ( void ) const inline ◆ IsSetRequest() bool CMSSearch_Base::IsSetRequest ( void ) const inline ◆ IsSetResearchthresh() bool CMSIterativeSettings_Base::IsSetResearchthresh ( void ) const inline ◆ IsSetResidues() bool CMSModSpec_Base::IsSetResidues ( void ) const inline

residues to apply mod to Check if a value has been assigned to Residues data member.

Data member Residues is optional; its type is defined as 'typedef list< string > TResidues'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 814 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

◆ IsSetResponse() bool CMSSearch_Base::IsSetResponse ( void ) const inline ◆ IsSetReversed() bool CMSPepHit_Base::IsSetReversed ( void ) const inline ◆ IsSetReversesearch() bool CMSSearchSettings_Base::IsSetReversesearch ( void ) const inline ◆ IsSetRid() [1/2] bool CMSRequest_Base::IsSetRid ( void ) const inline ◆ IsSetRid() [2/2] bool CMSResponse_Base::IsSetRid ( void ) const inline ◆ IsSetScale() [1/2] bool CMSResponse_Base::IsSetScale ( void ) const inline ◆ IsSetScale() [2/2] bool CMSSearchSettings_Base::IsSetScale ( void ) const inline ◆ IsSetScores() bool CMSHits_Base::IsSetScores ( void ) const inline

optional scores (for library search) Check if a value has been assigned to Scores data member.

Data member Scores is optional; its type is defined as 'typedef list< CRef< CMSScoreSet > > TScores'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 1267 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

◆ IsSetSearchb1() bool CMSSearchSettings_Base::IsSetSearchb1 ( void ) const inline ◆ IsSetSearchctermproduct() bool CMSSearchSettings_Base::IsSetSearchctermproduct ( void ) const inline ◆ IsSetSeq() bool CMSBioseq_Base::IsSetSeq ( void ) const inline

Check if a value has been assigned to Seq data member.

Data member Seq is mandatory; its type is defined as 'typedef CBioseq TSeq'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 247 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_Seq.

◆ IsSetSettingid() [1/2] bool CMSHitSet_Base::IsSetSettingid ( void ) const inline ◆ IsSetSettingid() [2/2] bool CMSSearchSettings_Base::IsSetSettingid ( void ) const inline ◆ IsSetSettings() bool CMSRequest_Base::IsSetSettings ( void ) const inline ◆ IsSetSinglenum() bool CMSSearchSettings_Base::IsSetSinglenum ( void ) const inline ◆ IsSetSinglewin() bool CMSSearchSettings_Base::IsSetSinglewin ( void ) const inline ◆ IsSetSite() bool CMSModHit_Base::IsSetSite ( void ) const inline ◆ IsSetSpectra() bool CMSRequest_Base::IsSetSpectra ( void ) const inline

the set of spectra Check if a value has been assigned to Spectra data member.

Data member Spectra is mandatory; its type is defined as 'typedef CMSSpectrumset TSpectra'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 332 of file MSRequest_.hpp.

References CMSRequest_Base::m_Spectra.

◆ IsSetStart() bool CMSPepHit_Base::IsSetStart ( void ) const inline ◆ IsSetStop() bool CMSPepHit_Base::IsSetStop ( void ) const inline ◆ IsSetSubsetthresh() bool CMSIterativeSettings_Base::IsSetSubsetthresh ( void ) const inline ◆ IsSetSuspect() bool CMSIonAnnot_Base::IsSetSuspect ( void ) const inline ◆ IsSetTaxids() bool CMSSearchSettings_Base::IsSetTaxids ( void ) const inline ◆ IsSetTheomass() bool CMSHits_Base::IsSetTheomass ( void ) const inline ◆ IsSetTophitnum() bool CMSSearchSettings_Base::IsSetTophitnum ( void ) const inline ◆ IsSetType() bool CMSModSpec_Base::IsSetType ( void ) const inline ◆ IsSetUnimod() bool CMSModSpec_Base::IsSetUnimod ( void ) const inline ◆ IsSetUseomssascore() bool CMSLibrarySettings_Base::IsSetUseomssascore ( void ) const inline ◆ IsSetUserannotation() bool CMSHitSet_Base::IsSetUserannotation ( void ) const inline ◆ IsSetUsereplicatescore() bool CMSLibrarySettings_Base::IsSetUsereplicatescore ( void ) const inline ◆ IsSetUsermods() bool CMSSearchSettings_Base::IsSetUsermods ( void ) const inline ◆ IsSetValue() [1/2] bool CMSScoreSet_Base::IsSetValue ( void ) const inline ◆ IsSetValue() [2/2] bool CNameValue_Base::IsSetValue ( void ) const inline ◆ IsSetVariable() bool CMSSearchSettings_Base::IsSetVariable ( void ) const inline

variable PTM's Check if a value has been assigned to Variable data member.

Data member Variable is mandatory; its type is defined as 'typedef list< int > TVariable'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 2959 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

◆ IsSetVersion() bool CMSResponse_Base::IsSetVersion ( void ) const inline ◆ IsSetZdep() bool CMSSearchSettings_Base::IsSetZdep ( void ) const inline ◆ operator const Tdata &() [1/4] ◆ operator const Tdata &() [2/4] ◆ operator const Tdata &() [3/4] ◆ operator const Tdata &() [4/4] ◆ operator Tdata &() [1/4] ◆ operator Tdata &() [2/4] ◆ operator Tdata &() [3/4] ◆ operator Tdata &() [4/4] ◆ operator=() [1/47] ◆ operator=() [2/47] ◆ operator=() [3/47] ◆ operator=() [4/47] ◆ operator=() [5/47] ◆ operator=() [6/47] ◆ operator=() [7/47] ◆ operator=() [8/47] ◆ operator=() [9/47] ◆ operator=() [10/47] ◆ operator=() [11/47] ◆ operator=() [12/47] ◆ operator=() [13/47] ◆ operator=() [14/47] ◆ operator=() [15/47] ◆ operator=() [16/47] ◆ operator=() [17/47] ◆ operator=() [18/47] ◆ operator=() [19/47] ◆ operator=() [20/47] ◆ operator=() [21/47] ◆ operator=() [22/47] ◆ operator=() [23/47] ◆ operator=() [24/47] ◆ operator=() [25/47] ◆ operator=() [26/47] ◆ operator=() [27/47] ◆ operator=() [28/47] ◆ operator=() [29/47] ◆ operator=() [30/47] ◆ operator=() [31/47] ◆ operator=() [32/47] ◆ operator=() [33/47] ◆ operator=() [34/47] ◆ operator=() [35/47] ◆ operator=() [36/47] ◆ operator=() [37/47] ◆ operator=() [38/47] ◆ operator=() [39/47] ◆ operator=() [40/47] ◆ operator=() [41/47] ◆ operator=() [42/47] ◆ operator=() [43/47] ◆ operator=() [44/47] ◆ operator=() [45/47] ◆ operator=() [46/47] ◆ operator=() [47/47] ◆ Reset() [1/27] void CMSBioseq_Base::Reset ( void ) virtual ◆ Reset() [2/27] void CMSBioseqSet_Base::Reset ( void ) ◆ Reset() [3/27] void CMSChargeHandle_Base::Reset ( void ) virtual ◆ Reset() [4/27] void CMSHits_Base::Reset ( void ) virtual

Reset the whole object.

Definition at line 102 of file MSHits_.cpp.

References CMSHits_Base::ResetCharge(), CMSHits_Base::ResetEvalue(), CMSHits_Base::ResetLibaccession(), CMSHits_Base::ResetMass(), CMSHits_Base::ResetMods(), CMSHits_Base::ResetMzhits(), CMSHits_Base::ResetOid(), CMSHits_Base::ResetPephits(), CMSHits_Base::ResetPepstart(), CMSHits_Base::ResetPepstop(), CMSHits_Base::ResetPepstring(), CMSHits_Base::ResetProtlength(), CMSHits_Base::ResetPvalue(), CMSHits_Base::ResetScores(), and CMSHits_Base::ResetTheomass().

◆ Reset() [5/27] void CMSHitSet_Base::Reset ( void ) virtual ◆ Reset() [6/27] void CMSImmonium_Base::Reset ( void ) virtual ◆ Reset() [7/27] void CMSInFile_Base::Reset ( void ) virtual ◆ Reset() [8/27] void CMSIon_Base::Reset ( void ) virtual ◆ Reset() [9/27] void CMSIonAnnot_Base::Reset ( void ) virtual ◆ Reset() [10/27] void CMSIterativeSettings_Base::Reset ( void ) virtual ◆ Reset() [11/27] void CMSLibrarySettings_Base::Reset ( void ) virtual ◆ Reset() [12/27] void CMSMassSet_Base::Reset ( void ) virtual ◆ Reset() [13/27] void CMSModHit_Base::Reset ( void ) virtual ◆ Reset() [14/27] void CMSModSpec_Base::Reset ( void ) virtual ◆ Reset() [15/27] void CMSModSpecSet_Base::Reset ( void ) ◆ Reset() [16/27] void CMSMZHit_Base::Reset ( void ) virtual ◆ Reset() [17/27] void CMSOutFile_Base::Reset ( void ) virtual ◆ Reset() [18/27] void CMSPepHit_Base::Reset ( void ) virtual ◆ Reset() [19/27] void CMSRequest_Base::Reset ( void ) virtual ◆ Reset() [20/27] void CMSResponse_Base::Reset ( void ) virtual ◆ Reset() [21/27] void CMSScoreSet_Base::Reset ( void ) virtual ◆ Reset() [22/27] void CMSSearch_Base::Reset ( void ) virtual ◆ Reset() [23/27] void CMSSearchSettings_Base::Reset ( void ) virtual

Reset the whole object.

Definition at line 179 of file MSSearchSettings_.cpp.

◆ Reset() [24/27] void CMSSearchSettingsSet_Base::Reset ( void ) ◆ Reset() [25/27] void CMSSpectrum_Base::Reset ( void ) virtual ◆ Reset() [26/27] void CMSSpectrumset_Base::Reset ( void ) ◆ Reset() [27/27] void CNameValue_Base::Reset ( void ) virtual ◆ ResetAbundance() void CMSSpectrum_Base::ResetAbundance ( void ) ◆ ResetAccession() void CMSPepHit_Base::ResetAccession ( void ) ◆ ResetAnnotation() void CMSMZHit_Base::ResetAnnotation ( void ) ◆ ResetAutomassadjust() void CMSSearchSettings_Base::ResetAutomassadjust ( void ) inline ◆ ResetAveragemass() [1/2] void CMSMassSet_Base::ResetAveragemass ( void ) inline ◆ ResetAveragemass() [2/2] void CMSModSpec_Base::ResetAveragemass ( void ) inline ◆ ResetBioseqs() void CMSResponse_Base::ResetBioseqs ( void ) ◆ ResetCalccharge() void CMSChargeHandle_Base::ResetCalccharge ( void ) inline ◆ ResetCalcplusone() void CMSChargeHandle_Base::ResetCalcplusone ( void ) inline ◆ ResetCharge() [1/3] void CMSHits_Base::ResetCharge ( void ) inline ◆ ResetCharge() [2/3] void CMSMZHit_Base::ResetCharge ( void ) inline ◆ ResetCharge() [3/3] void CMSSpectrum_Base::ResetCharge ( void ) ◆ ResetChargehandling() void CMSSearchSettings_Base::ResetChargehandling ( void ) ◆ ResetConsidermult() void CMSChargeHandle_Base::ResetConsidermult ( void ) inline ◆ ResetCuthi() void CMSSearchSettings_Base::ResetCuthi ( void ) inline ◆ ResetCutinc() void CMSSearchSettings_Base::ResetCutinc ( void ) inline ◆ ResetCutlo() void CMSSearchSettings_Base::ResetCutlo ( void ) inline ◆ ResetCutoff() void CMSSearchSettings_Base::ResetCutoff ( void ) inline ◆ ResetDb() void CMSSearchSettings_Base::ResetDb ( void ) ◆ ResetDbversion() void CMSResponse_Base::ResetDbversion ( void ) inline ◆ ResetDefline() void CMSPepHit_Base::ResetDefline ( void ) ◆ ResetDoublenum() void CMSSearchSettings_Base::ResetDoublenum ( void ) inline ◆ ResetDoublewin() void CMSSearchSettings_Base::ResetDoublewin ( void ) inline ◆ ResetEmail() void CMSResponse_Base::ResetEmail ( void ) ◆ ResetEnzyme() void CMSSearchSettings_Base::ResetEnzyme ( void ) inline ◆ ResetError() [1/2] void CMSHitSet_Base::ResetError ( void ) inline ◆ ResetError() [2/2] void CMSResponse_Base::ResetError ( void ) inline ◆ ResetEvalue() void CMSHits_Base::ResetEvalue ( void ) inline ◆ ResetExactmass() void CMSSearchSettings_Base::ResetExactmass ( void ) inline ◆ ResetFixed() void CMSSearchSettings_Base::ResetFixed ( void ) ◆ ResetGi() void CMSPepHit_Base::ResetGi ( void ) inline ◆ ResetHitlistlen() void CMSSearchSettings_Base::ResetHitlistlen ( void ) inline ◆ ResetHits() void CMSHitSet_Base::ResetHits ( void ) ◆ ResetHitsets() void CMSResponse_Base::ResetHitsets ( void ) ◆ ResetIds() [1/2] void CMSHitSet_Base::ResetIds ( void ) ◆ ResetIds() [2/2] void CMSSpectrum_Base::ResetIds ( void ) ◆ ResetImmonium() void CMSIon_Base::ResetImmonium ( void ) ◆ ResetIncluderequest() void CMSOutFile_Base::ResetIncluderequest ( void ) inline ◆ ResetIndex() void CMSMZHit_Base::ResetIndex ( void ) inline ◆ ResetInfile() void CMSInFile_Base::ResetInfile ( void ) ◆ ResetInfiles() void CMSSearchSettings_Base::ResetInfiles ( void ) ◆ ResetInfiletype() void CMSInFile_Base::ResetInfiletype ( void ) inline ◆ ResetInternal() void CMSIon_Base::ResetInternal ( void ) ◆ ResetIon() void CMSMZHit_Base::ResetIon ( void ) inline ◆ ResetIonstosearch() void CMSSearchSettings_Base::ResetIonstosearch ( void ) ◆ ResetIscale() void CMSSpectrum_Base::ResetIscale ( void ) inline ◆ ResetIsotope() void CMSIon_Base::ResetIsotope ( void ) inline ◆ ResetIterativesettings() void CMSSearchSettings_Base::ResetIterativesettings ( void ) ◆ ResetLibaccession() void CMSHits_Base::ResetLibaccession ( void ) ◆ ResetLibnames() void CMSLibrarySettings_Base::ResetLibnames ( void ) ◆ ResetLibsearchsettings() void CMSSearchSettings_Base::ResetLibsearchsettings ( void ) ◆ ResetLomasscutoff() void CMSSearchSettings_Base::ResetLomasscutoff ( void ) inline ◆ ResetMass() void CMSHits_Base::ResetMass ( void ) inline ◆ ResetMassdiff() void CMSIonAnnot_Base::ResetMassdiff ( void ) inline ◆ ResetMaxcharge() void CMSChargeHandle_Base::ResetMaxcharge ( void ) inline ◆ ResetMaxmods() void CMSSearchSettings_Base::ResetMaxmods ( void ) inline ◆ ResetMaxnoenzyme() void CMSSearchSettings_Base::ResetMaxnoenzyme ( void ) inline ◆ ResetMaxproductcharge() void CMSChargeHandle_Base::ResetMaxproductcharge ( void ) inline ◆ ResetMaxproductions() void CMSSearchSettings_Base::ResetMaxproductions ( void ) inline ◆ ResetMincharge() void CMSChargeHandle_Base::ResetMincharge ( void ) inline ◆ ResetMinhit() void CMSSearchSettings_Base::ResetMinhit ( void ) inline ◆ ResetMinnoenzyme() void CMSSearchSettings_Base::ResetMinnoenzyme ( void ) inline ◆ ResetMinspectra() void CMSSearchSettings_Base::ResetMinspectra ( void ) inline ◆ ResetMissedcleave() void CMSSearchSettings_Base::ResetMissedcleave ( void ) inline ◆ ResetMissingisotope() void CMSIonAnnot_Base::ResetMissingisotope ( void ) inline ◆ ResetMod() void CMSModSpec_Base::ResetMod ( void ) inline ◆ ResetMods() void CMSHits_Base::ResetMods ( void ) ◆ ResetModset() void CMSRequest_Base::ResetModset ( void ) ◆ ResetModtype() void CMSModHit_Base::ResetModtype ( void ) inline ◆ ResetMonomass() [1/2] void CMSMassSet_Base::ResetMonomass ( void ) inline ◆ ResetMonomass() [2/2] void CMSModSpec_Base::ResetMonomass ( void ) inline ◆ ResetMoreion() void CMSMZHit_Base::ResetMoreion ( void ) ◆ ResetMoresettings() void CMSRequest_Base::ResetMoresettings ( void ) ◆ ResetMsmsppm() void CMSSearchSettings_Base::ResetMsmsppm ( void ) inline ◆ ResetMsmstol() void CMSSearchSettings_Base::ResetMsmstol ( void ) inline ◆ ResetMz() [1/2] void CMSMZHit_Base::ResetMz ( void ) inline ◆ ResetMz() [2/2] void CMSSpectrum_Base::ResetMz ( void ) ◆ ResetMzhits() void CMSHits_Base::ResetMzhits ( void ) ◆ ResetN15mass() [1/2] void CMSMassSet_Base::ResetN15mass ( void ) inline ◆ ResetN15mass() [2/2] void CMSModSpec_Base::ResetN15mass ( void ) inline ◆ ResetName() [1/3] void CMSModSpec_Base::ResetName ( void ) ◆ ResetName() [2/3] void CMSScoreSet_Base::ResetName ( void ) ◆ ResetName() [3/3] void CNameValue_Base::ResetName ( void ) ◆ ResetNamevalue() [1/2] void CMSHitSet_Base::ResetNamevalue ( void ) ◆ ResetNamevalue() [2/2] void CMSSpectrum_Base::ResetNamevalue ( void ) ◆ ResetNegative() void CMSChargeHandle_Base::ResetNegative ( void ) inline ◆ ResetNeutralloss() [1/2] void CMSIon_Base::ResetNeutralloss ( void ) inline ◆ ResetNeutralloss() [2/2] void CMSModSpec_Base::ResetNeutralloss ( void ) ◆ ResetNmethionine() void CMSSearchSettings_Base::ResetNmethionine ( void ) inline ◆ ResetNocorrelationscore() void CMSSearchSettings_Base::ResetNocorrelationscore ( void ) inline ◆ ResetNoprolineions() void CMSSearchSettings_Base::ResetNoprolineions ( void ) ◆ ResetNumber() [1/3] void CMSHitSet_Base::ResetNumber ( void ) inline ◆ ResetNumber() [2/3] void CMSMZHit_Base::ResetNumber ( void ) inline ◆ ResetNumber() [3/3] void CMSSpectrum_Base::ResetNumber ( void ) inline ◆ ResetNumisotopes() void CMSSearchSettings_Base::ResetNumisotopes ( void ) inline ◆ ResetOid() [1/3] void CMSBioseq_Base::ResetOid ( void ) inline ◆ ResetOid() [2/3] void CMSHits_Base::ResetOid ( void ) inline ◆ ResetOid() [3/3] void CMSPepHit_Base::ResetOid ( void ) inline ◆ ResetOthersettings() void CMSSearchSettings_Base::ResetOthersettings ( void ) ◆ ResetOutfile() void CMSOutFile_Base::ResetOutfile ( void ) ◆ ResetOutfiles() void CMSSearchSettings_Base::ResetOutfiles ( void ) ◆ ResetOutfiletype() void CMSOutFile_Base::ResetOutfiletype ( void ) inline ◆ ResetParent() void CMSImmonium_Base::ResetParent ( void ) ◆ ResetPephits() void CMSHits_Base::ResetPephits ( void ) ◆ ResetPepppm() void CMSSearchSettings_Base::ResetPepppm ( void ) inline ◆ ResetPepstart() [1/2] void CMSHits_Base::ResetPepstart ( void ) ◆ ResetPepstart() [2/2] void CMSPepHit_Base::ResetPepstart ( void ) ◆ ResetPepstop() [1/2] void CMSHits_Base::ResetPepstop ( void ) ◆ ResetPepstop() [2/2] void CMSPepHit_Base::ResetPepstop ( void ) ◆ ResetPepstring() void CMSHits_Base::ResetPepstring ( void ) ◆ ResetPeptol() void CMSSearchSettings_Base::ResetPeptol ( void ) inline ◆ ResetPlusone() void CMSChargeHandle_Base::ResetPlusone ( void ) inline ◆ ResetPrecursorcull() void CMSSearchSettings_Base::ResetPrecursorcull ( void ) inline ◆ ResetPrecursormz() void CMSSpectrum_Base::ResetPrecursormz ( void ) inline ◆ ResetPrecursorsearchtype() void CMSSearchSettings_Base::ResetPrecursorsearchtype ( void ) inline ◆ ResetPresearch() void CMSLibrarySettings_Base::ResetPresearch ( void ) inline ◆ ResetProbfollowingion() void CMSSearchSettings_Base::ResetProbfollowingion ( void ) inline ◆ ResetProdlesspre() void CMSChargeHandle_Base::ResetProdlesspre ( void ) inline ◆ ResetProduct() void CMSImmonium_Base::ResetProduct ( void ) ◆ ResetProductsearchtype() void CMSSearchSettings_Base::ResetProductsearchtype ( void ) inline ◆ ResetProtlength() [1/2] void CMSHits_Base::ResetProtlength ( void ) inline ◆ ResetProtlength() [2/2] void CMSPepHit_Base::ResetProtlength ( void ) inline ◆ ResetPseudocount() void CMSSearchSettings_Base::ResetPseudocount ( void ) inline ◆ ResetPsi_ms() void CMSModSpec_Base::ResetPsi_ms ( void ) ◆ ResetPvalue() void CMSHits_Base::ResetPvalue ( void ) inline ◆ ResetQtofscore() void CMSLibrarySettings_Base::ResetQtofscore ( void ) inline ◆ ResetReplacethresh() void CMSIterativeSettings_Base::ResetReplacethresh ( void ) inline ◆ ResetReportedhitcount() void CMSSearchSettings_Base::ResetReportedhitcount ( void ) inline ◆ ResetRequest() void CMSSearch_Base::ResetRequest ( void ) ◆ ResetResearchthresh() void CMSIterativeSettings_Base::ResetResearchthresh ( void ) inline ◆ ResetResidues() void CMSModSpec_Base::ResetResidues ( void ) ◆ ResetResponse() void CMSSearch_Base::ResetResponse ( void ) ◆ ResetReversed() void CMSPepHit_Base::ResetReversed ( void ) inline ◆ ResetReversesearch() void CMSSearchSettings_Base::ResetReversesearch ( void ) inline ◆ ResetRid() [1/2] void CMSRequest_Base::ResetRid ( void ) ◆ ResetRid() [2/2] void CMSResponse_Base::ResetRid ( void ) ◆ ResetScale() [1/2] void CMSResponse_Base::ResetScale ( void ) inline ◆ ResetScale() [2/2] void CMSSearchSettings_Base::ResetScale ( void ) inline ◆ ResetScores() void CMSHits_Base::ResetScores ( void ) ◆ ResetSearchb1() void CMSSearchSettings_Base::ResetSearchb1 ( void ) inline ◆ ResetSearchctermproduct() void CMSSearchSettings_Base::ResetSearchctermproduct ( void ) inline ◆ ResetSeq() void CMSBioseq_Base::ResetSeq ( void ) ◆ ResetSettingid() [1/2] void CMSHitSet_Base::ResetSettingid ( void ) inline ◆ ResetSettingid() [2/2] void CMSSearchSettings_Base::ResetSettingid ( void ) inline ◆ ResetSettings() void CMSRequest_Base::ResetSettings ( void ) ◆ ResetSinglenum() void CMSSearchSettings_Base::ResetSinglenum ( void ) inline ◆ ResetSinglewin() void CMSSearchSettings_Base::ResetSinglewin ( void ) inline ◆ ResetSite() void CMSModHit_Base::ResetSite ( void ) inline ◆ ResetSpectra() void CMSRequest_Base::ResetSpectra ( void ) ◆ ResetStart() void CMSPepHit_Base::ResetStart ( void ) inline ◆ ResetStop() void CMSPepHit_Base::ResetStop ( void ) inline ◆ ResetSubsetthresh() void CMSIterativeSettings_Base::ResetSubsetthresh ( void ) inline ◆ ResetSuspect() void CMSIonAnnot_Base::ResetSuspect ( void ) inline ◆ ResetTaxids() void CMSSearchSettings_Base::ResetTaxids ( void ) ◆ ResetTheomass() void CMSHits_Base::ResetTheomass ( void ) inline ◆ ResetTophitnum() void CMSSearchSettings_Base::ResetTophitnum ( void ) inline ◆ ResetType() void CMSModSpec_Base::ResetType ( void ) inline ◆ ResetUnimod() void CMSModSpec_Base::ResetUnimod ( void ) inline ◆ ResetUseomssascore() void CMSLibrarySettings_Base::ResetUseomssascore ( void ) inline ◆ ResetUserannotation() void CMSHitSet_Base::ResetUserannotation ( void ) inline ◆ ResetUsereplicatescore() void CMSLibrarySettings_Base::ResetUsereplicatescore ( void ) inline ◆ ResetUsermods() void CMSSearchSettings_Base::ResetUsermods ( void ) ◆ ResetValue() [1/2] void CMSScoreSet_Base::ResetValue ( void ) inline ◆ ResetValue() [2/2] void CNameValue_Base::ResetValue ( void ) ◆ ResetVariable() void CMSSearchSettings_Base::ResetVariable ( void ) ◆ ResetVersion() void CMSResponse_Base::ResetVersion ( void ) ◆ ResetZdep() void CMSSearchSettings_Base::ResetZdep ( void ) inline ◆ Set() [1/4] ◆ Set() [2/4] ◆ Set() [3/4] ◆ Set() [4/4] ◆ SetAbundance() ◆ SetAccession() [1/3] ◆ SetAccession() [2/3] ◆ SetAccession() [3/3] ◆ SetAnnotation() [1/2] ◆ SetAnnotation() [2/2] ◆ SetAutomassadjust() [1/2] ◆ SetAutomassadjust() [2/2] ◆ SetAveragemass() [1/4] ◆ SetAveragemass() [2/4] ◆ SetAveragemass() [3/4] ◆ SetAveragemass() [4/4] ◆ SetBioseqs() [1/2] ◆ SetBioseqs() [2/2] ◆ SetCalccharge() [1/2] ◆ SetCalccharge() [2/2] ◆ SetCalcplusone() [1/2] ◆ SetCalcplusone() [2/2] ◆ SetCharge() [1/5] ◆ SetCharge() [2/5] ◆ SetCharge() [3/5] ◆ SetCharge() [4/5] ◆ SetCharge() [5/5] ◆ SetChargehandling() [1/2] ◆ SetChargehandling() [2/2] ◆ SetConsidermult() [1/2] ◆ SetConsidermult() [2/2] ◆ SetCuthi() [1/2] ◆ SetCuthi() [2/2] ◆ SetCutinc() [1/2] ◆ SetCutinc() [2/2] ◆ SetCutlo() [1/2] ◆ SetCutlo() [2/2] ◆ SetCutoff() [1/2] ◆ SetCutoff() [2/2] ◆ SetDb() [1/3] void CMSSearchSettings_Base::SetDb ( const TDb & value ) inline ◆ SetDb() [2/3] ◆ SetDb() [3/3] ◆ SetDbversion() [1/2] ◆ SetDbversion() [2/2] ◆ SetDefaultCalccharge() void CMSChargeHandle_Base::SetDefaultCalccharge ( void ) inline ◆ SetDefaultCalcplusone() void CMSChargeHandle_Base::SetDefaultCalcplusone ( void ) inline ◆ SetDefaultConsidermult() void CMSChargeHandle_Base::SetDefaultConsidermult ( void ) inline ◆ SetDefaultHitlistlen() void CMSSearchSettings_Base::SetDefaultHitlistlen ( void ) inline ◆ SetDefaultMaxcharge() void CMSChargeHandle_Base::SetDefaultMaxcharge ( void ) inline ◆ SetDefaultMaxmods() void CMSSearchSettings_Base::SetDefaultMaxmods ( void ) inline ◆ SetDefaultMaxnoenzyme() void CMSSearchSettings_Base::SetDefaultMaxnoenzyme ( void ) inline ◆ SetDefaultMaxproductions() void CMSSearchSettings_Base::SetDefaultMaxproductions ( void ) inline ◆ SetDefaultMincharge() void CMSChargeHandle_Base::SetDefaultMincharge ( void ) inline ◆ SetDefaultMinhit() void CMSSearchSettings_Base::SetDefaultMinhit ( void ) inline ◆ SetDefaultMinnoenzyme() void CMSSearchSettings_Base::SetDefaultMinnoenzyme ( void ) inline ◆ SetDefaultMinspectra() void CMSSearchSettings_Base::SetDefaultMinspectra ( void ) inline ◆ SetDefaultNegative() void CMSChargeHandle_Base::SetDefaultNegative ( void ) inline ◆ SetDefaultPseudocount() void CMSSearchSettings_Base::SetDefaultPseudocount ( void ) inline ◆ SetDefaultScale() [1/2] void CMSResponse_Base::SetDefaultScale ( void ) inline ◆ SetDefaultScale() [2/2] void CMSSearchSettings_Base::SetDefaultScale ( void ) inline ◆ SetDefaultSearchb1() void CMSSearchSettings_Base::SetDefaultSearchb1 ( void ) inline ◆ SetDefaultSearchctermproduct() void CMSSearchSettings_Base::SetDefaultSearchctermproduct ( void ) inline ◆ SetDefline() [1/3] ◆ SetDefline() [2/3] ◆ SetDefline() [3/3] ◆ SetDoublenum() [1/2] ◆ SetDoublenum() [2/2] ◆ SetDoublewin() [1/2] ◆ SetDoublewin() [2/2] ◆ SetEmail() [1/3] void CMSResponse_Base::SetEmail ( const TEmail & value ) inline ◆ SetEmail() [2/3] ◆ SetEmail() [3/3] ◆ SetEnzyme() [1/2] ◆ SetEnzyme() [2/2] ◆ SetError() [1/4] ◆ SetError() [2/4] ◆ SetError() [3/4] ◆ SetError() [4/4] ◆ SetEvalue() [1/2] ◆ SetEvalue() [2/2] ◆ SetExactmass() [1/2] ◆ SetExactmass() [2/2] ◆ SetFixed() ◆ SetGi() [1/2] ◆ SetGi() [2/2] ◆ SetHitlistlen() [1/2] ◆ SetHitlistlen() [2/2] ◆ SetHits() ◆ SetHitsets() ◆ SetIds() [1/2] ◆ SetIds() [2/2] ◆ SetImmonium() [1/2] ◆ SetImmonium() [2/2] ◆ SetIncluderequest() [1/2] ◆ SetIncluderequest() [2/2] ◆ SetIndex() [1/2] ◆ SetIndex() [2/2] ◆ SetInfile() [1/3] ◆ SetInfile() [2/3] ◆ SetInfile() [3/3] ◆ SetInfiles() ◆ SetInfiletype() [1/2] ◆ SetInfiletype() [2/2] ◆ SetInternal() [1/3] ◆ SetInternal() [2/3] ◆ SetInternal() [3/3] ◆ SetIon() [1/2] ◆ SetIon() [2/2] ◆ SetIonstosearch() ◆ SetIscale() [1/2] ◆ SetIscale() [2/2] ◆ SetIsotope() [1/2] ◆ SetIsotope() [2/2] ◆ SetIterativesettings() [1/2] ◆ SetIterativesettings() [2/2] ◆ SetLibaccession() [1/3] ◆ SetLibaccession() [2/3] ◆ SetLibaccession() [3/3] ◆ SetLibnames() ◆ SetLibsearchsettings() [1/2] ◆ SetLibsearchsettings() [2/2] ◆ SetLomasscutoff() [1/2] ◆ SetLomasscutoff() [2/2] ◆ SetMass() [1/2] ◆ SetMass() [2/2] ◆ SetMassdiff() [1/2] ◆ SetMassdiff() [2/2] ◆ SetMaxcharge() [1/2] ◆ SetMaxcharge() [2/2] ◆ SetMaxmods() [1/2] ◆ SetMaxmods() [2/2] ◆ SetMaxnoenzyme() [1/2] ◆ SetMaxnoenzyme() [2/2] ◆ SetMaxproductcharge() [1/2] ◆ SetMaxproductcharge() [2/2] ◆ SetMaxproductions() [1/2] ◆ SetMaxproductions() [2/2] ◆ SetMincharge() [1/2] ◆ SetMincharge() [2/2] ◆ SetMinhit() [1/2] ◆ SetMinhit() [2/2] ◆ SetMinnoenzyme() [1/2] ◆ SetMinnoenzyme() [2/2] ◆ SetMinspectra() [1/2] ◆ SetMinspectra() [2/2] ◆ SetMissedcleave() [1/2] ◆ SetMissedcleave() [2/2] ◆ SetMissingisotope() [1/2] ◆ SetMissingisotope() [2/2] ◆ SetMod() [1/2] ◆ SetMod() [2/2] ◆ SetMods() ◆ SetModset() [1/2] ◆ SetModset() [2/2] ◆ SetModtype() [1/2] ◆ SetModtype() [2/2] ◆ SetMonomass() [1/4] ◆ SetMonomass() [2/4] ◆ SetMonomass() [3/4] ◆ SetMonomass() [4/4] ◆ SetMoreion() [1/2] ◆ SetMoreion() [2/2] ◆ SetMoresettings() [1/2] ◆ SetMoresettings() [2/2] ◆ SetMsmsppm() [1/2] ◆ SetMsmsppm() [2/2] ◆ SetMsmstol() [1/2] ◆ SetMsmstol() [2/2] ◆ SetMz() [1/3] ◆ SetMz() [2/3] ◆ SetMz() [3/3] ◆ SetMzhits() ◆ SetN15mass() [1/4] ◆ SetN15mass() [2/4] ◆ SetN15mass() [3/4] ◆ SetN15mass() [4/4] ◆ SetName() [1/9] void CMSModSpec_Base::SetName ( const TName & value ) inline ◆ SetName() [2/9] void CMSScoreSet_Base::SetName ( const TName & value ) inline ◆ SetName() [3/9] void CNameValue_Base::SetName ( const TName & value ) inline ◆ SetName() [4/9] ◆ SetName() [5/9] ◆ SetName() [6/9] ◆ SetName() [7/9] ◆ SetName() [8/9] ◆ SetName() [9/9] ◆ SetNamevalue() [1/2] ◆ SetNamevalue() [2/2] ◆ SetNegative() [1/2] ◆ SetNegative() [2/2] ◆ SetNeutralloss() [1/4] ◆ SetNeutralloss() [2/4] ◆ SetNeutralloss() [3/4] ◆ SetNeutralloss() [4/4] ◆ SetNmethionine() [1/2] ◆ SetNmethionine() [2/2] ◆ SetNocorrelationscore() [1/2] ◆ SetNocorrelationscore() [2/2] ◆ SetNoprolineions() ◆ SetNumber() [1/6] ◆ SetNumber() [2/6] ◆ SetNumber() [3/6] ◆ SetNumber() [4/6] ◆ SetNumber() [5/6] ◆ SetNumber() [6/6] ◆ SetNumisotopes() [1/2] ◆ SetNumisotopes() [2/2] ◆ SetOid() [1/6] ◆ SetOid() [2/6] ◆ SetOid() [3/6] ◆ SetOid() [4/6] ◆ SetOid() [5/6] ◆ SetOid() [6/6] ◆ SetOthersettings() ◆ SetOutfile() [1/3] ◆ SetOutfile() [2/3] ◆ SetOutfile() [3/3] ◆ SetOutfiles() ◆ SetOutfiletype() [1/2] ◆ SetOutfiletype() [2/2] ◆ SetParent() [1/3] ◆ SetParent() [2/3] ◆ SetParent() [3/3] ◆ SetPephits() ◆ SetPepppm() [1/2] ◆ SetPepppm() [2/2] ◆ SetPepstart() [1/6] ◆ SetPepstart() [2/6] ◆ SetPepstart() [3/6] ◆ SetPepstart() [4/6] ◆ SetPepstart() [5/6] ◆ SetPepstart() [6/6] ◆ SetPepstop() [1/6] ◆ SetPepstop() [2/6] ◆ SetPepstop() [3/6] ◆ SetPepstop() [4/6] ◆ SetPepstop() [5/6] ◆ SetPepstop() [6/6] ◆ SetPepstring() [1/3] ◆ SetPepstring() [2/3] ◆ SetPepstring() [3/3] ◆ SetPeptol() [1/2] ◆ SetPeptol() [2/2] ◆ SetPlusone() [1/2] ◆ SetPlusone() [2/2] ◆ SetPrecursorcull() [1/2] ◆ SetPrecursorcull() [2/2] ◆ SetPrecursormz() [1/2] ◆ SetPrecursormz() [2/2] ◆ SetPrecursorsearchtype() [1/2] ◆ SetPrecursorsearchtype() [2/2] ◆ SetPresearch() [1/2] ◆ SetPresearch() [2/2] ◆ SetProbfollowingion() [1/2] ◆ SetProbfollowingion() [2/2] ◆ SetProdlesspre() [1/2] ◆ SetProdlesspre() [2/2] ◆ SetProduct() [1/3] ◆ SetProduct() [2/3] ◆ SetProduct() [3/3] ◆ SetProductsearchtype() [1/2] ◆ SetProductsearchtype() [2/2] ◆ SetProtlength() [1/4] ◆ SetProtlength() [2/4] ◆ SetProtlength() [3/4] ◆ SetProtlength() [4/4] ◆ SetPseudocount() [1/2] ◆ SetPseudocount() [2/2] ◆ SetPsi_ms() [1/3] ◆ SetPsi_ms() [2/3] ◆ SetPsi_ms() [3/3] ◆ SetPvalue() [1/2] ◆ SetPvalue() [2/2] ◆ SetQtofscore() [1/2] ◆ SetQtofscore() [2/2] ◆ SetReplacethresh() [1/2] ◆ SetReplacethresh() [2/2] ◆ SetReportedhitcount() [1/2] ◆ SetReportedhitcount() [2/2] ◆ SetRequest() ◆ SetResearchthresh() [1/2] ◆ SetResearchthresh() [2/2] ◆ SetResidues() ◆ SetResponse() ◆ SetReversed() [1/2] ◆ SetReversed() [2/2] ◆ SetReversesearch() [1/2] ◆ SetReversesearch() [2/2] ◆ SetRid() [1/6] void CMSRequest_Base::SetRid ( const TRid & value ) inline ◆ SetRid() [2/6] void CMSResponse_Base::SetRid ( const TRid & value ) inline ◆ SetRid() [3/6] ◆ SetRid() [4/6] ◆ SetRid() [5/6] ◆ SetRid() [6/6] ◆ SetScale() [1/4] ◆ SetScale() [2/4] ◆ SetScale() [3/4] ◆ SetScale() [4/4] ◆ SetScores() ◆ SetSearchb1() [1/2] ◆ SetSearchb1() [2/2] ◆ SetSearchctermproduct() [1/2] ◆ SetSearchctermproduct() [2/2] ◆ SetSeq() [1/2] ◆ SetSeq() [2/2] ◆ SetSettingid() [1/4] ◆ SetSettingid() [2/4] ◆ SetSettingid() [3/4] ◆ SetSettingid() [4/4] ◆ SetSettings() [1/2] ◆ SetSettings() [2/2] ◆ SetSinglenum() [1/2] ◆ SetSinglenum() [2/2] ◆ SetSinglewin() [1/2] ◆ SetSinglewin() [2/2] ◆ SetSite() [1/2] ◆ SetSite() [2/2] ◆ SetSpectra() [1/2] ◆ SetSpectra() [2/2] ◆ SetStart() [1/2] ◆ SetStart() [2/2] ◆ SetStop() [1/2] ◆ SetStop() [2/2] ◆ SetSubsetthresh() [1/2] ◆ SetSubsetthresh() [2/2] ◆ SetSuspect() [1/2] ◆ SetSuspect() [2/2] ◆ SetTaxids() ◆ SetTheomass() [1/2] ◆ SetTheomass() [2/2] ◆ SetTophitnum() [1/2] ◆ SetTophitnum() [2/2] ◆ SetType() [1/2] ◆ SetType() [2/2] ◆ SetUnimod() [1/2] ◆ SetUnimod() [2/2] ◆ SetUseomssascore() [1/2] ◆ SetUseomssascore() [2/2] ◆ SetUserannotation() [1/2] ◆ SetUserannotation() [2/2] ◆ SetUsereplicatescore() [1/2] ◆ SetUsereplicatescore() [2/2] ◆ SetUsermods() [1/2] ◆ SetUsermods() [2/2] ◆ SetValue() [1/5] void CNameValue_Base::SetValue ( const TValue & value ) inline ◆ SetValue() [2/5] ◆ SetValue() [3/5] ◆ SetValue() [4/5] ◆ SetValue() [5/5] ◆ SetVariable() ◆ SetVersion() [1/3] ◆ SetVersion() [2/3] ◆ SetVersion() [3/3] ◆ SetZdep() [1/2] ◆ SetZdep() [2/2] ◆ ~CMSBioseq() CMSBioseq::~CMSBioseq ( void )

Definition at line 50 of file MSBioseq.cpp.

◆ ~CMSBioseq_Base() CMSBioseq_Base::~CMSBioseq_Base ( void ) virtual

Definition at line 93 of file MSBioseq_.cpp.

◆ ~CMSBioseqSet_Base() CMSBioseqSet_Base::~CMSBioseqSet_Base ( void ) virtual

Definition at line 74 of file MSBioseqSet_.cpp.

◆ ~CMSChargeHandle() ◆ ~CMSChargeHandle_Base() CMSChargeHandle_Base::~CMSChargeHandle_Base ( void ) virtual

Definition at line 89 of file MSChargeHandle_.cpp.

◆ ~CMSHits_Base() CMSHits_Base::~CMSHits_Base ( void ) virtual

Definition at line 153 of file MSHits_.cpp.

◆ ~CMSHitSet() CMSHitSet::~CMSHitSet ( void )

Definition at line 50 of file MSHitSet.cpp.

◆ ~CMSHitSet_Base() CMSHitSet_Base::~CMSHitSet_Base ( void ) virtual

Definition at line 105 of file MSHitSet_.cpp.

◆ ~CMSImmonium() CMSImmonium::~CMSImmonium ( void )

Definition at line 50 of file MSImmonium.cpp.

◆ ~CMSImmonium_Base() CMSImmonium_Base::~CMSImmonium_Base ( void ) virtual

Definition at line 86 of file MSImmonium_.cpp.

◆ ~CMSInFile() CMSInFile::~CMSInFile ( void )

Definition at line 50 of file MSInFile.cpp.

◆ ~CMSInFile_Base() CMSInFile_Base::~CMSInFile_Base ( void ) virtual

Definition at line 81 of file MSInFile_.cpp.

◆ ~CMSIon() ◆ ~CMSIon_Base() CMSIon_Base::~CMSIon_Base ( void ) virtual

Definition at line 103 of file MSIon_.cpp.

◆ ~CMSIonAnnot() CMSIonAnnot::~CMSIonAnnot ( void )

Definition at line 50 of file MSIonAnnot.cpp.

◆ ~CMSIonAnnot_Base() CMSIonAnnot_Base::~CMSIonAnnot_Base ( void ) virtual

Definition at line 77 of file MSIonAnnot_.cpp.

◆ ~CMSIterativeSettings() ◆ ~CMSIterativeSettings_Base() ◆ ~CMSLibrarySettings() ◆ ~CMSLibrarySettings_Base() CMSLibrarySettings_Base::~CMSLibrarySettings_Base ( void ) virtual

Definition at line 87 of file MSLibrarySettings_.cpp.

◆ ~CMSMassSet() CMSMassSet::~CMSMassSet ( void )

Definition at line 50 of file MSMassSet.cpp.

◆ ~CMSMassSet_Base() CMSMassSet_Base::~CMSMassSet_Base ( void ) virtual

Definition at line 77 of file MSMassSet_.cpp.

◆ ~CMSModHit() CMSModHit::~CMSModHit ( void )

Definition at line 50 of file MSModHit.cpp.

◆ ~CMSModHit_Base() CMSModHit_Base::~CMSModHit_Base ( void ) virtual

Definition at line 75 of file MSModHit_.cpp.

◆ ~CMSModSpec() CMSModSpec::~CMSModSpec ( void )

Definition at line 50 of file MSModSpec.cpp.

◆ ~CMSModSpec_Base() CMSModSpec_Base::~CMSModSpec_Base ( void ) virtual

Definition at line 127 of file MSModSpec_.cpp.

◆ ~CMSModSpecSet_Base() CMSModSpecSet_Base::~CMSModSpecSet_Base ( void ) virtual

Definition at line 74 of file MSModSpecSet_.cpp.

◆ ~CMSMZHit() CMSMZHit::~CMSMZHit ( void )

Definition at line 50 of file MSMZHit.cpp.

◆ ~CMSMZHit_Base() CMSMZHit_Base::~CMSMZHit_Base ( void ) virtual

Definition at line 121 of file MSMZHit_.cpp.

◆ ~CMSOutFile() CMSOutFile::~CMSOutFile ( void )

Definition at line 50 of file MSOutFile.cpp.

◆ ~CMSOutFile_Base() CMSOutFile_Base::~CMSOutFile_Base ( void ) virtual

Definition at line 83 of file MSOutFile_.cpp.

◆ ~CMSPepHit() CMSPepHit::~CMSPepHit ( void )

Definition at line 50 of file MSPepHit.cpp.

◆ ~CMSPepHit_Base() CMSPepHit_Base::~CMSPepHit_Base ( void ) virtual

Definition at line 115 of file MSPepHit_.cpp.

◆ ~CMSRequest_Base() CMSRequest_Base::~CMSRequest_Base ( void ) virtual

Definition at line 156 of file MSRequest_.cpp.

◆ ~CMSResponse_Base() CMSResponse_Base::~CMSResponse_Base ( void ) virtual

Definition at line 130 of file MSResponse_.cpp.

◆ ~CMSScoreSet() CMSScoreSet::~CMSScoreSet ( void )

Definition at line 50 of file MSScoreSet.cpp.

◆ ~CMSScoreSet_Base() CMSScoreSet_Base::~CMSScoreSet_Base ( void ) virtual

Definition at line 81 of file MSScoreSet_.cpp.

◆ ~CMSSearch_Base() CMSSearch_Base::~CMSSearch_Base ( void ) virtual

Definition at line 88 of file MSSearch_.cpp.

◆ ~CMSSearchSettings_Base() ◆ ~CMSSearchSettingsSet() ◆ ~CMSSearchSettingsSet_Base() ◆ ~CMSSpectrum() CMSSpectrum::~CMSSpectrum ( void )

Definition at line 50 of file MSSpectrum.cpp.

◆ ~CMSSpectrum_Base() CMSSpectrum_Base::~CMSSpectrum_Base ( void ) virtual

Definition at line 118 of file MSSpectrum_.cpp.

◆ ~CMSSpectrumset() ◆ ~CMSSpectrumset_Base() CMSSpectrumset_Base::~CMSSpectrumset_Base ( void ) virtual

Definition at line 74 of file MSSpectrumset_.cpp.

◆ ~CNameValue() CNameValue::~CNameValue ( void )

Definition at line 50 of file NameValue.cpp.

◆ ~CNameValue_Base() CNameValue_Base::~CNameValue_Base ( void ) virtual

Definition at line 86 of file NameValue_.cpp.

◆ m_Abundance vector< int > CMSSpectrum_Base::m_Abundance private ◆ m_Accession string CMSPepHit_Base::m_Accession private ◆ m_Annotation ◆ m_Automassadjust double CMSSearchSettings_Base::m_Automassadjust private ◆ m_Averagemass [1/2] double CMSMassSet_Base::m_Averagemass private ◆ m_Averagemass [2/2] double CMSModSpec_Base::m_Averagemass private ◆ m_Bioseqs ◆ m_Calccharge int CMSChargeHandle_Base::m_Calccharge private ◆ m_Calcplusone int CMSChargeHandle_Base::m_Calcplusone private ◆ m_Charge [1/3] int CMSHits_Base::m_Charge private ◆ m_Charge [2/3] int CMSMZHit_Base::m_Charge private ◆ m_Charge [3/3] list< int > CMSSpectrum_Base::m_Charge private ◆ m_Chargehandling ◆ m_Considermult int CMSChargeHandle_Base::m_Considermult private ◆ m_Cuthi double CMSSearchSettings_Base::m_Cuthi private ◆ m_Cutinc double CMSSearchSettings_Base::m_Cutinc private ◆ m_Cutlo double CMSSearchSettings_Base::m_Cutlo private ◆ m_Cutoff double CMSSearchSettings_Base::m_Cutoff private ◆ m_data [1/4] ◆ m_data [2/4] ◆ m_data [3/4] ◆ m_data [4/4] ◆ m_Db string CMSSearchSettings_Base::m_Db private ◆ m_Dbversion int CMSResponse_Base::m_Dbversion private ◆ m_Defline string CMSPepHit_Base::m_Defline private ◆ m_Doublenum int CMSSearchSettings_Base::m_Doublenum private ◆ m_Doublewin int CMSSearchSettings_Base::m_Doublewin private ◆ m_Email string CMSResponse_Base::m_Email private ◆ m_Enzyme int CMSSearchSettings_Base::m_Enzyme private ◆ m_Error [1/2] int CMSHitSet_Base::m_Error private ◆ m_Error [2/2] int CMSResponse_Base::m_Error private ◆ m_Evalue double CMSHits_Base::m_Evalue private ◆ m_Exactmass double CMSSearchSettings_Base::m_Exactmass private ◆ m_Fixed list< int > CMSSearchSettings_Base::m_Fixed private ◆ m_Gi ◆ m_Hitlistlen int CMSSearchSettings_Base::m_Hitlistlen private ◆ m_Hits ◆ m_Hitsets ◆ m_Ids [1/2] list< string > CMSHitSet_Base::m_Ids private ◆ m_Ids [2/2] list< string > CMSSpectrum_Base::m_Ids private ◆ m_Immonium ◆ m_Includerequest bool CMSOutFile_Base::m_Includerequest private ◆ m_Index int CMSMZHit_Base::m_Index private ◆ m_Infile string CMSInFile_Base::m_Infile private ◆ m_Infiles ◆ m_Infiletype int CMSInFile_Base::m_Infiletype private ◆ m_Internal string CMSIon_Base::m_Internal private ◆ m_Ion ◆ m_Ionstosearch list< int > CMSSearchSettings_Base::m_Ionstosearch private ◆ m_Iscale double CMSSpectrum_Base::m_Iscale private ◆ m_Isotope int CMSIon_Base::m_Isotope private ◆ m_Iterativesettings ◆ m_Libaccession string CMSHits_Base::m_Libaccession private ◆ m_Libnames list< string > CMSLibrarySettings_Base::m_Libnames private ◆ m_Libsearchsettings ◆ m_Lomasscutoff double CMSSearchSettings_Base::m_Lomasscutoff private ◆ m_Mass ◆ m_Massdiff double CMSIonAnnot_Base::m_Massdiff private ◆ m_Maxcharge int CMSChargeHandle_Base::m_Maxcharge private ◆ m_Maxmods int CMSSearchSettings_Base::m_Maxmods private ◆ m_Maxnoenzyme int CMSSearchSettings_Base::m_Maxnoenzyme private ◆ m_Maxproductcharge int CMSChargeHandle_Base::m_Maxproductcharge private ◆ m_Maxproductions int CMSSearchSettings_Base::m_Maxproductions private ◆ m_Mincharge int CMSChargeHandle_Base::m_Mincharge private ◆ m_Minhit int CMSSearchSettings_Base::m_Minhit private ◆ m_Minnoenzyme int CMSSearchSettings_Base::m_Minnoenzyme private ◆ m_Minspectra int CMSSearchSettings_Base::m_Minspectra private ◆ m_Missedcleave int CMSSearchSettings_Base::m_Missedcleave private ◆ m_Missingisotope bool CMSIonAnnot_Base::m_Missingisotope private ◆ m_Mod int CMSModSpec_Base::m_Mod private ◆ m_Mods ◆ m_Modset ◆ m_Modtype int CMSModHit_Base::m_Modtype private ◆ m_Monomass [1/2] double CMSMassSet_Base::m_Monomass private ◆ m_Monomass [2/2] double CMSModSpec_Base::m_Monomass private ◆ m_Moreion ◆ m_Moresettings ◆ m_Msmsppm bool CMSSearchSettings_Base::m_Msmsppm private ◆ m_Msmstol double CMSSearchSettings_Base::m_Msmstol private ◆ m_Mz [1/2] ◆ m_Mz [2/2] vector< int > CMSSpectrum_Base::m_Mz private ◆ m_Mzhits ◆ m_N15mass [1/2] double CMSMassSet_Base::m_N15mass private ◆ m_N15mass [2/2] double CMSModSpec_Base::m_N15mass private ◆ m_Name [1/3] string CMSModSpec_Base::m_Name private ◆ m_Name [2/3] string CMSScoreSet_Base::m_Name private ◆ m_Name [3/3] string CNameValue_Base::m_Name private ◆ m_Namevalue [1/2] ◆ m_Namevalue [2/2] ◆ m_Negative int CMSChargeHandle_Base::m_Negative private ◆ m_Neutralloss [1/2] int CMSIon_Base::m_Neutralloss private ◆ m_Neutralloss [2/2] ◆ m_Nmethionine bool CMSSearchSettings_Base::m_Nmethionine private ◆ m_Nocorrelationscore int CMSSearchSettings_Base::m_Nocorrelationscore private ◆ m_Noprolineions list< int > CMSSearchSettings_Base::m_Noprolineions private ◆ m_Number [1/3] int CMSHitSet_Base::m_Number private ◆ m_Number [2/3] int CMSMZHit_Base::m_Number private ◆ m_Number [3/3] int CMSSpectrum_Base::m_Number private ◆ m_Numisotopes int CMSSearchSettings_Base::m_Numisotopes private ◆ m_Oid [1/3] int CMSBioseq_Base::m_Oid private ◆ m_Oid [2/3] ◆ m_Oid [3/3] int CMSPepHit_Base::m_Oid private ◆ m_Othersettings ◆ m_Outfile string CMSOutFile_Base::m_Outfile private ◆ m_Outfiles ◆ m_Outfiletype int CMSOutFile_Base::m_Outfiletype private ◆ m_Parent string CMSImmonium_Base::m_Parent private ◆ m_Pephits ◆ m_Pepppm bool CMSSearchSettings_Base::m_Pepppm private ◆ m_Pepstart [1/2] string CMSHits_Base::m_Pepstart private ◆ m_Pepstart [2/2] string CMSPepHit_Base::m_Pepstart private ◆ m_Pepstop [1/2] string CMSHits_Base::m_Pepstop private ◆ m_Pepstop [2/2] string CMSPepHit_Base::m_Pepstop private ◆ m_Pepstring string CMSHits_Base::m_Pepstring private ◆ m_Peptol double CMSSearchSettings_Base::m_Peptol private ◆ m_Plusone double CMSChargeHandle_Base::m_Plusone private ◆ m_Precursorcull int CMSSearchSettings_Base::m_Precursorcull private ◆ m_Precursormz int CMSSpectrum_Base::m_Precursormz private ◆ m_Precursorsearchtype int CMSSearchSettings_Base::m_Precursorsearchtype private ◆ m_Presearch bool CMSLibrarySettings_Base::m_Presearch private ◆ m_Probfollowingion double CMSSearchSettings_Base::m_Probfollowingion private ◆ m_Prodlesspre bool CMSChargeHandle_Base::m_Prodlesspre private ◆ m_Product string CMSImmonium_Base::m_Product private ◆ m_Productsearchtype int CMSSearchSettings_Base::m_Productsearchtype private ◆ m_Protlength [1/2] int CMSHits_Base::m_Protlength private ◆ m_Protlength [2/2] int CMSPepHit_Base::m_Protlength private ◆ m_Pseudocount int CMSSearchSettings_Base::m_Pseudocount private ◆ m_Psi_ms string CMSModSpec_Base::m_Psi_ms private ◆ m_Pvalue double CMSHits_Base::m_Pvalue private ◆ m_Qtofscore bool CMSLibrarySettings_Base::m_Qtofscore private ◆ m_Replacethresh double CMSIterativeSettings_Base::m_Replacethresh private ◆ m_Reportedhitcount int CMSSearchSettings_Base::m_Reportedhitcount private ◆ m_Request ◆ m_Researchthresh double CMSIterativeSettings_Base::m_Researchthresh private ◆ m_Residues list< string > CMSModSpec_Base::m_Residues private ◆ m_Response ◆ m_Reversed bool CMSPepHit_Base::m_Reversed private ◆ m_Reversesearch bool CMSSearchSettings_Base::m_Reversesearch private ◆ m_Rid [1/2] ◆ m_Rid [2/2] string CMSResponse_Base::m_Rid private ◆ m_Scale [1/2] int CMSResponse_Base::m_Scale private ◆ m_Scale [2/2] int CMSSearchSettings_Base::m_Scale private ◆ m_Scores ◆ m_Searchb1 int CMSSearchSettings_Base::m_Searchb1 private ◆ m_Searchctermproduct int CMSSearchSettings_Base::m_Searchctermproduct private ◆ m_Seq ◆ m_set_State [1/27] Uint4 CMSBioseq_Base::m_set_State[1] private ◆ m_set_State [2/27] Uint4 CMSBioseqSet_Base::m_set_State[1] private ◆ m_set_State [3/27] Uint4 CMSChargeHandle_Base::m_set_State[1] private

Definition at line 485 of file MSChargeHandle_.hpp.

◆ m_set_State [4/27] Uint4 CMSHits_Base::m_set_State[1] private

Definition at line 694 of file MSHits_.hpp.

◆ m_set_State [5/27] Uint4 CMSHitSet_Base::m_set_State[1] private

Definition at line 377 of file MSHitSet_.hpp.

◆ m_set_State [6/27] Uint4 CMSImmonium_Base::m_set_State[1] private ◆ m_set_State [7/27] Uint4 CMSInFile_Base::m_set_State[1] private ◆ m_set_State [8/27] Uint4 CMSIon_Base::m_set_State[1] private ◆ m_set_State [9/27] Uint4 CMSIonAnnot_Base::m_set_State[1] private ◆ m_set_State [10/27] Uint4 CMSIterativeSettings_Base::m_set_State[1] private ◆ m_set_State [11/27] Uint4 CMSLibrarySettings_Base::m_set_State[1] private

Definition at line 301 of file MSLibrarySettings_.hpp.

◆ m_set_State [12/27] Uint4 CMSMassSet_Base::m_set_State[1] private ◆ m_set_State [13/27] Uint4 CMSModHit_Base::m_set_State[1] private ◆ m_set_State [14/27] Uint4 CMSModSpec_Base::m_set_State[1] private

Definition at line 509 of file MSModSpec_.hpp.

◆ m_set_State [15/27] Uint4 CMSModSpecSet_Base::m_set_State[1] private ◆ m_set_State [16/27] Uint4 CMSMZHit_Base::m_set_State[1] private

Definition at line 391 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::CMSMZHit_Base(), CMSMZHit_Base::IsSetCharge(), CMSMZHit_Base::IsSetIndex(), CMSMZHit_Base::IsSetIon(), CMSMZHit_Base::IsSetMz(), CMSMZHit_Base::IsSetNumber(), CMSMZHit_Base::ResetCharge(), CMSMZHit_Base::ResetIndex(), CMSMZHit_Base::ResetIon(), CMSMZHit_Base::ResetMz(), CMSMZHit_Base::ResetNumber(), CMSMZHit_Base::SetCharge(), CMSMZHit_Base::SetIndex(), CMSMZHit_Base::SetIon(), CMSMZHit_Base::SetMz(), and CMSMZHit_Base::SetNumber().

◆ m_set_State [17/27] Uint4 CMSOutFile_Base::m_set_State[1] private ◆ m_set_State [18/27] Uint4 CMSPepHit_Base::m_set_State[1] private

Definition at line 511 of file MSPepHit_.hpp.

◆ m_set_State [19/27] Uint4 CMSRequest_Base::m_set_State[1] private ◆ m_set_State [20/27] Uint4 CMSResponse_Base::m_set_State[1] private

Definition at line 433 of file MSResponse_.hpp.

◆ m_set_State [21/27] Uint4 CMSScoreSet_Base::m_set_State[1] private ◆ m_set_State [22/27] Uint4 CMSSearch_Base::m_set_State[1] private ◆ m_set_State [23/27] Uint4 CMSSearchSettingsSet_Base::m_set_State[1] private ◆ m_set_State [24/27] Uint4 CMSSpectrum_Base::m_set_State[1] private

Definition at line 402 of file MSSpectrum_.hpp.

◆ m_set_State [25/27] Uint4 CMSSpectrumset_Base::m_set_State[1] private ◆ m_set_State [26/27] Uint4 CNameValue_Base::m_set_State[1] private ◆ m_set_State [27/27] Uint4 CMSSearchSettings_Base::m_set_State[4] private

Definition at line 2232 of file MSSearchSettings_.hpp.

◆ m_Settingid [1/2] int CMSHitSet_Base::m_Settingid private ◆ m_Settingid [2/2] int CMSSearchSettings_Base::m_Settingid private ◆ m_Settings ◆ m_Singlenum int CMSSearchSettings_Base::m_Singlenum private ◆ m_Singlewin int CMSSearchSettings_Base::m_Singlewin private ◆ m_Site int CMSModHit_Base::m_Site private ◆ m_Spectra ◆ m_Start int CMSPepHit_Base::m_Start private ◆ m_Stop int CMSPepHit_Base::m_Stop private ◆ m_Subsetthresh double CMSIterativeSettings_Base::m_Subsetthresh private ◆ m_Suspect bool CMSIonAnnot_Base::m_Suspect private ◆ m_Taxids list< int > CMSSearchSettings_Base::m_Taxids private ◆ m_Theomass int CMSHits_Base::m_Theomass private ◆ m_Tophitnum int CMSSearchSettings_Base::m_Tophitnum private ◆ m_Type int CMSModSpec_Base::m_Type private ◆ m_Unimod int CMSModSpec_Base::m_Unimod private ◆ m_Useomssascore bool CMSLibrarySettings_Base::m_Useomssascore private ◆ m_Userannotation int CMSHitSet_Base::m_Userannotation private ◆ m_Usereplicatescore bool CMSLibrarySettings_Base::m_Usereplicatescore private ◆ m_Usermods ◆ m_Value [1/2] double CMSScoreSet_Base::m_Value private ◆ m_Value [2/2] string CNameValue_Base::m_Value private ◆ m_Variable list< int > CMSSearchSettings_Base::m_Variable private ◆ m_Version string CMSResponse_Base::m_Version private ◆ m_Zdep int CMSSearchSettings_Base::m_Zdep private

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