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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__dataspec__NCBI__SeqCode.html below:

Code generated by DATATOOL from 'seqcode.asn' (module 'NCBI-SeqCode')

enum class   CSeq_code_set_Base::E_memberIndex { CSeq_code_set_Base::e__allMandatory = 0 , CSeq_code_set_Base::e_codes , CSeq_code_set_Base::e_maps }   enum class   CSeq_code_table_Base::C_E_Table::E_memberIndex { CSeq_code_table_Base::C_E_Table::e__allMandatory = 0 , CSeq_code_table_Base::C_E_Table::e_symbol , CSeq_code_table_Base::C_E_Table::e_name }   enum class   CSeq_code_table_Base::E_memberIndex {
  CSeq_code_table_Base::e__allMandatory = 0 , CSeq_code_table_Base::e_code , CSeq_code_table_Base::e_num , CSeq_code_table_Base::e_one_letter ,
  CSeq_code_table_Base::e_start_at , CSeq_code_table_Base::e_table , CSeq_code_table_Base::e_comps
}   enum   ESeq_code_type {
  eSeq_code_type_iupacna = 1 , eSeq_code_type_iupacaa = 2 , eSeq_code_type_ncbi2na = 3 , eSeq_code_type_ncbi4na = 4 ,
  eSeq_code_type_ncbi8na = 5 , eSeq_code_type_ncbipna = 6 , eSeq_code_type_ncbi8aa = 7 , eSeq_code_type_ncbieaa = 8 ,
  eSeq_code_type_ncbipaa = 9 , eSeq_code_type_iupacaa3 = 10 , eSeq_code_type_ncbistdaa = 11
}   sequence representations More...
  enum class   CSeq_map_table_Base::E_memberIndex {
  CSeq_map_table_Base::e__allMandatory = 0 , CSeq_map_table_Base::e_from , CSeq_map_table_Base::e_to , CSeq_map_table_Base::e_num ,
  CSeq_map_table_Base::e_start_at , CSeq_map_table_Base::e_table
}   ◆ C_E ◆ TCode ◆ TCodes ◆ TComps ◆ TFrom ◆ TMaps ◆ TmemberIndex [1/4] ◆ TmemberIndex [2/4] ◆ TmemberIndex [3/4] ◆ TmemberIndex [4/4] ◆ TName ◆ TNum [1/2] ◆ TNum [2/2] ◆ TOne_letter ◆ Tparent [1/7] ◆ Tparent [2/7] ◆ Tparent [3/7] ◆ Tparent [4/7] ◆ Tparent [5/7] ◆ Tparent [6/7] ◆ Tparent [7/7] ◆ TStart_at [1/2] ◆ TStart_at [2/2] ◆ TSymbol ◆ TTable [1/2] ◆ TTable [2/2] ◆ TTo ◆ E_memberIndex [1/4] ◆ E_memberIndex [2/4] ◆ E_memberIndex [3/4] Enumerator e__allMandatory  e_code  e_num  e_one_letter  e_start_at  e_table  e_comps 

Definition at line 220 of file Seq_code_table_.hpp.

◆ E_memberIndex [4/4] Enumerator e__allMandatory  e_from  e_to  e_num  e_start_at  e_table 

Definition at line 94 of file Seq_map_table_.hpp.

◆ ESeq_code_type

sequence representations

Access to ESeq_code_type's attributes (values, names) as defined in spec.

Enumerator eSeq_code_type_iupacna 

IUPAC 1 letter nuc acid code.

eSeq_code_type_iupacaa 

IUPAC 1 letter amino acid code.

eSeq_code_type_ncbi2na 

2 bit nucleic acid code

eSeq_code_type_ncbi4na 

4 bit nucleic acid code

eSeq_code_type_ncbi8na 

8 bit extended nucleic acid code

eSeq_code_type_ncbipna 

nucleic acid probabilities

eSeq_code_type_ncbi8aa 

8 bit extended amino acid codes

eSeq_code_type_ncbieaa 

extended ASCII 1 letter aa codes

eSeq_code_type_ncbipaa 

amino acid probabilities

eSeq_code_type_iupacaa3 

3 letter code only for display

eSeq_code_type_ncbistdaa 

consecutive codes for std aas, 0-25

Definition at line 64 of file Seq_code_type_.hpp.

◆ C_E_Table() [1/2] ◆ C_E_Table() [2/2] ◆ CanGetCode() bool CSeq_code_table_Base::CanGetCode ( void  ) const inline ◆ CanGetCodes() bool CSeq_code_set_Base::CanGetCodes ( void  ) const inline

Check if it is safe to call GetCodes method.

Returns

Definition at line 198 of file Seq_code_set_.hpp.

◆ CanGetComps() bool CSeq_code_table_Base::CanGetComps ( void  ) const inline

Check if it is safe to call GetComps method.

Returns

Definition at line 798 of file Seq_code_table_.hpp.

◆ CanGetFrom() bool CSeq_map_table_Base::CanGetFrom ( void  ) const inline ◆ CanGetMaps() bool CSeq_code_set_Base::CanGetMaps ( void  ) const inline

Check if it is safe to call GetMaps method.

Returns

Definition at line 223 of file Seq_code_set_.hpp.

◆ CanGetName() bool CSeq_code_table_Base::C_E_Table::CanGetName ( void  ) const inline

Check if it is safe to call GetName method.

Returns

Definition at line 535 of file Seq_code_table_.hpp.

◆ CanGetNum() [1/2] bool CSeq_code_table_Base::CanGetNum ( void  ) const inline ◆ CanGetNum() [2/2] bool CSeq_map_table_Base::CanGetNum ( void  ) const inline ◆ CanGetOne_letter() bool CSeq_code_table_Base::CanGetOne_letter ( void  ) const inline ◆ CanGetStart_at() [1/2] bool CSeq_code_table_Base::CanGetStart_at ( void  ) const inline

Check if it is safe to call GetStart_at method.

Returns

Definition at line 723 of file Seq_code_table_.hpp.

◆ CanGetStart_at() [2/2] bool CSeq_map_table_Base::CanGetStart_at ( void  ) const inline

Check if it is safe to call GetStart_at method.

Returns

Definition at line 469 of file Seq_map_table_.hpp.

◆ CanGetSymbol() bool CSeq_code_table_Base::C_E_Table::CanGetSymbol ( void  ) const inline

Check if it is safe to call GetSymbol method.

Returns

Definition at line 488 of file Seq_code_table_.hpp.

◆ CanGetTable() [1/2] bool CSeq_code_table_Base::CanGetTable ( void  ) const inline

Check if it is safe to call GetTable method.

Returns

Definition at line 773 of file Seq_code_table_.hpp.

◆ CanGetTable() [2/2] bool CSeq_map_table_Base::CanGetTable ( void  ) const inline

Check if it is safe to call GetTable method.

Returns

Definition at line 519 of file Seq_map_table_.hpp.

◆ CanGetTo() bool CSeq_map_table_Base::CanGetTo ( void  ) const inline ◆ CSeq_code_set() [1/2] ◆ CSeq_code_set() [2/2] CSeq_code_set::CSeq_code_set ( void  ) inline

Definition at line 86 of file Seq_code_set.hpp.

◆ CSeq_code_set_Base() [1/2] ◆ CSeq_code_set_Base() [2/2] ◆ CSeq_code_table() [1/2] ◆ CSeq_code_table() [2/2] ◆ CSeq_code_table_Base() [1/2] ◆ CSeq_code_table_Base() [2/2] ◆ CSeq_map_table() [1/2] ◆ CSeq_map_table() [2/2] CSeq_map_table::CSeq_map_table ( void  ) inline

Definition at line 86 of file Seq_map_table.hpp.

◆ CSeq_map_table_Base() [1/2] ◆ CSeq_map_table_Base() [2/2] ◆ DECLARE_INTERNAL_TYPE_INFO() [1/4] CSeq_code_set_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [2/4] CSeq_code_table_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [3/4] CSeq_code_table_Base::C_E_Table::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [4/4] CSeq_map_table_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ GetCode() ◆ GetCodes() ◆ GetComps() ◆ GetFrom() ◆ GetMaps() ◆ GetName() ◆ GetNum() [1/2] ◆ GetNum() [2/2] ◆ GetOne_letter() ◆ GetStart_at() [1/2] ◆ GetStart_at() [2/2] ◆ GetSymbol() ◆ GetTable() [1/2] ◆ GetTable() [2/2] ◆ GetTo() ◆ IsSetCode() bool CSeq_code_table_Base::IsSetCode ( void  ) const inline ◆ IsSetCodes() bool CSeq_code_set_Base::IsSetCodes ( void  ) const inline

Check if a value has been assigned to Codes data member.

Data member Codes is optional; its type is defined as 'typedef list< CRef< CSeq_code_table > > TCodes'

Returns

Definition at line 192 of file Seq_code_set_.hpp.

References CSeq_code_set_Base::m_set_State.

◆ IsSetComps() bool CSeq_code_table_Base::IsSetComps ( void  ) const inline

pointers to complement nuc acid Check if a value has been assigned to Comps data member.

Data member Comps is optional; its type is defined as 'typedef list< int > TComps'

Returns

Definition at line 792 of file Seq_code_table_.hpp.

References CSeq_code_table_Base::m_set_State.

◆ IsSetFrom() bool CSeq_map_table_Base::IsSetFrom ( void  ) const inline ◆ IsSetMaps() bool CSeq_code_set_Base::IsSetMaps ( void  ) const inline

Check if a value has been assigned to Maps data member.

Data member Maps is optional; its type is defined as 'typedef list< CRef< CSeq_map_table > > TMaps'

Returns

Definition at line 217 of file Seq_code_set_.hpp.

References CSeq_code_set_Base::m_set_State.

◆ IsSetName() bool CSeq_code_table_Base::C_E_Table::IsSetName ( void  ) const inline ◆ IsSetNum() [1/2] bool CSeq_code_table_Base::IsSetNum ( void  ) const inline ◆ IsSetNum() [2/2] bool CSeq_map_table_Base::IsSetNum ( void  ) const inline ◆ IsSetOne_letter() bool CSeq_code_table_Base::IsSetOne_letter ( void  ) const inline ◆ IsSetStart_at() [1/2] bool CSeq_code_table_Base::IsSetStart_at ( void  ) const inline ◆ IsSetStart_at() [2/2] bool CSeq_map_table_Base::IsSetStart_at ( void  ) const inline ◆ IsSetSymbol() bool CSeq_code_table_Base::C_E_Table::IsSetSymbol ( void  ) const inline ◆ IsSetTable() [1/2] bool CSeq_code_table_Base::IsSetTable ( void  ) const inline

an explanatory name or string Check if a value has been assigned to Table data member.

Data member Table is mandatory; its type is defined as 'typedef list< CRef< C_E_Table > > TTable'

Returns

Definition at line 767 of file Seq_code_table_.hpp.

References CSeq_code_table_Base::m_set_State.

◆ IsSetTable() [2/2] bool CSeq_map_table_Base::IsSetTable ( void  ) const inline

table of values, in from-to order Check if a value has been assigned to Table data member.

Data member Table is mandatory; its type is defined as 'typedef list< int > TTable'

Returns

Definition at line 513 of file Seq_map_table_.hpp.

References CSeq_map_table_Base::m_set_State.

◆ IsSetTo() bool CSeq_map_table_Base::IsSetTo ( void  ) const inline ◆ operator=() [1/7] ◆ operator=() [2/7] ◆ operator=() [3/7] ◆ operator=() [4/7] ◆ operator=() [5/7] ◆ operator=() [6/7] ◆ operator=() [7/7] ◆ Reset() [1/4] void CSeq_code_set_Base::Reset ( void  ) virtual ◆ Reset() [2/4] void CSeq_code_table_Base::C_E_Table::Reset ( void  ) ◆ Reset() [3/4] void CSeq_code_table_Base::Reset ( void  ) virtual ◆ Reset() [4/4] void CSeq_map_table_Base::Reset ( void  ) virtual ◆ ResetCode() void CSeq_code_table_Base::ResetCode ( void  ) inline ◆ ResetCodes() void CSeq_code_set_Base::ResetCodes ( void  ) ◆ ResetComps() void CSeq_code_table_Base::ResetComps ( void  ) ◆ ResetFrom() void CSeq_map_table_Base::ResetFrom ( void  ) inline ◆ ResetMaps() void CSeq_code_set_Base::ResetMaps ( void  ) ◆ ResetName() void CSeq_code_table_Base::C_E_Table::ResetName ( void  ) ◆ ResetNum() [1/2] void CSeq_code_table_Base::ResetNum ( void  ) inline ◆ ResetNum() [2/2] void CSeq_map_table_Base::ResetNum ( void  ) inline ◆ ResetOne_letter() void CSeq_code_table_Base::ResetOne_letter ( void  ) inline ◆ ResetStart_at() [1/2] void CSeq_code_table_Base::ResetStart_at ( void  ) inline ◆ ResetStart_at() [2/2] void CSeq_map_table_Base::ResetStart_at ( void  ) inline ◆ ResetSymbol() void CSeq_code_table_Base::C_E_Table::ResetSymbol ( void  ) ◆ ResetTable() [1/2] void CSeq_code_table_Base::ResetTable ( void  ) ◆ ResetTable() [2/2] void CSeq_map_table_Base::ResetTable ( void  ) ◆ ResetTo() void CSeq_map_table_Base::ResetTo ( void  ) inline ◆ SetCode() [1/2] ◆ SetCode() [2/2] ◆ SetCodes() ◆ SetComps() ◆ SetDefaultStart_at() [1/2] void CSeq_code_table_Base::SetDefaultStart_at ( void  ) inline ◆ SetDefaultStart_at() [2/2] void CSeq_map_table_Base::SetDefaultStart_at ( void  ) inline ◆ SetFrom() [1/2] ◆ SetFrom() [2/2] ◆ SetMaps() ◆ SetName() [1/3] void CSeq_code_table_Base::C_E_Table::SetName ( const TName &  value ) inline ◆ SetName() [2/3] void CSeq_code_table_Base::C_E_Table::SetName ( TName &&  value ) inline ◆ SetName() [3/3] ◆ SetNum() [1/4] ◆ SetNum() [2/4] ◆ SetNum() [3/4] ◆ SetNum() [4/4] ◆ SetOne_letter() [1/2] ◆ SetOne_letter() [2/2] ◆ SetStart_at() [1/4] ◆ SetStart_at() [2/4] ◆ SetStart_at() [3/4] ◆ SetStart_at() [4/4] ◆ SetSymbol() [1/3] void CSeq_code_table_Base::C_E_Table::SetSymbol ( const TSymbol &  value ) inline ◆ SetSymbol() [2/3] void CSeq_code_table_Base::C_E_Table::SetSymbol ( TSymbol &&  value ) inline ◆ SetSymbol() [3/3] ◆ SetTable() [1/2] ◆ SetTable() [2/2] ◆ SetTo() [1/2] ◆ SetTo() [2/2] ◆ ~C_E_Table() ◆ ~CSeq_code_set() ◆ ~CSeq_code_set_Base() CSeq_code_set_Base::~CSeq_code_set_Base ( void  ) virtual

Definition at line 88 of file Seq_code_set_.cpp.

◆ ~CSeq_code_table() ◆ ~CSeq_code_table_Base() CSeq_code_table_Base::~CSeq_code_table_Base ( void  ) virtual

Definition at line 137 of file Seq_code_table_.cpp.

◆ ~CSeq_map_table() ◆ ~CSeq_map_table_Base() CSeq_map_table_Base::~CSeq_map_table_Base ( void  ) virtual

Definition at line 87 of file Seq_map_table_.cpp.

◆ m_Code ◆ m_Codes ◆ m_Comps list< int > CSeq_code_table_Base::m_Comps private ◆ m_From ◆ m_Maps ◆ m_Name ◆ m_Num [1/2] int CSeq_code_table_Base::m_Num private ◆ m_Num [2/2] int CSeq_map_table_Base::m_Num private ◆ m_One_letter bool CSeq_code_table_Base::m_One_letter private ◆ m_set_State [1/4] Uint4 CSeq_code_set_Base::m_set_State[1] private ◆ m_set_State [2/4] Uint4 CSeq_code_table_Base::C_E_Table::m_set_State[1] private ◆ m_set_State [3/4] Uint4 CSeq_code_table_Base::m_set_State[1] private

Definition at line 463 of file Seq_code_table_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), BEGIN_NAMED_CLASS_INFO(), CSeq_code_table_Base::C_E_Table::C_E_Table(), CSeq_code_table_Base::CSeq_code_table_Base(), CSeq_code_table_Base::IsSetCode(), CSeq_code_table_Base::IsSetComps(), CSeq_code_table_Base::C_E_Table::IsSetName(), CSeq_code_table_Base::IsSetNum(), CSeq_code_table_Base::IsSetOne_letter(), CSeq_code_table_Base::IsSetStart_at(), CSeq_code_table_Base::IsSetTable(), CSeq_code_table_Base::ResetCode(), CSeq_code_table_Base::ResetComps(), CSeq_code_table_Base::C_E_Table::ResetName(), CSeq_code_table_Base::ResetNum(), CSeq_code_table_Base::ResetOne_letter(), CSeq_code_table_Base::ResetStart_at(), CSeq_code_table_Base::ResetTable(), CSeq_code_table_Base::SetCode(), CSeq_code_table_Base::SetComps(), CSeq_code_table_Base::C_E_Table::SetName(), CSeq_code_table_Base::SetNum(), CSeq_code_table_Base::SetOne_letter(), CSeq_code_table_Base::SetStart_at(), CSeq_code_table_Base::C_E_Table::SetSymbol(), and CSeq_code_table_Base::SetTable().

◆ m_set_State [4/4] Uint4 CSeq_map_table_Base::m_set_State[1] private

Definition at line 304 of file Seq_map_table_.hpp.

Referenced by CSeq_map_table_Base::CSeq_map_table_Base(), CSeq_map_table_Base::IsSetFrom(), CSeq_map_table_Base::IsSetNum(), CSeq_map_table_Base::IsSetStart_at(), CSeq_map_table_Base::IsSetTable(), CSeq_map_table_Base::IsSetTo(), CSeq_map_table_Base::ResetFrom(), CSeq_map_table_Base::ResetNum(), CSeq_map_table_Base::ResetStart_at(), CSeq_map_table_Base::ResetTable(), CSeq_map_table_Base::ResetTo(), CSeq_map_table_Base::SetFrom(), CSeq_map_table_Base::SetNum(), CSeq_map_table_Base::SetStart_at(), CSeq_map_table_Base::SetTable(), and CSeq_map_table_Base::SetTo().

◆ m_Start_at [1/2] int CSeq_code_table_Base::m_Start_at private ◆ m_Start_at [2/2] int CSeq_map_table_Base::m_Start_at private ◆ m_Symbol string CSeq_code_table_Base::C_E_Table::m_Symbol private ◆ m_Table [1/2] ◆ m_Table [2/2] list< int > CSeq_map_table_Base::m_Table private ◆ m_To

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