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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__dataspec__NCBI__BioTree.html below:

Code generated by DATATOOL from 'biotree.asn' (module 'NCBI-BioTree')

enum class   CBioTreeContainer_Base::E_memberIndex {
  CBioTreeContainer_Base::e__allMandatory = 0 , CBioTreeContainer_Base::e_treetype , CBioTreeContainer_Base::e_fdict , CBioTreeContainer_Base::e_nodes ,
  CBioTreeContainer_Base::e_label , CBioTreeContainer_Base::e_user
}   enum class   CDistanceMatrix_Base::E_memberIndex { CDistanceMatrix_Base::e__allMandatory = 0 , CDistanceMatrix_Base::e_labels , CDistanceMatrix_Base::e_distances }   enum class   CFeatureDescr_Base::E_memberIndex { CFeatureDescr_Base::e__allMandatory = 0 , CFeatureDescr_Base::e_id , CFeatureDescr_Base::e_name }   enum class   CNode_Base::E_memberIndex { CNode_Base::e__allMandatory = 0 , CNode_Base::e_id , CNode_Base::e_parent , CNode_Base::e_features }   enum class   CNodeFeature_Base::E_memberIndex { CNodeFeature_Base::e__allMandatory = 0 , CNodeFeature_Base::e_featureid , CNodeFeature_Base::e_value }   ◆ Tdata [1/3] ◆ Tdata [2/3] ◆ Tdata [3/3] ◆ TDistances ◆ TFdict ◆ TFeatureid ◆ TFeatures ◆ TId [1/2] ◆ TId [2/2] ◆ TLabel ◆ TLabels ◆ TmemberIndex [1/5] ◆ TmemberIndex [2/5] ◆ TmemberIndex [3/5] ◆ TmemberIndex [4/5] ◆ TmemberIndex [5/5] ◆ TName ◆ TNodes ◆ Tparent [1/14] ◆ Tparent [2/14] ◆ Tparent [3/14] ◆ Tparent [4/14] ◆ Tparent [5/14] ◆ Tparent [6/14] ◆ Tparent [7/14] ◆ Tparent [8/14] ◆ TParent ◆ Tparent [9/14] ◆ Tparent [10/14] ◆ Tparent [11/14] ◆ Tparent [12/14] ◆ Tparent [13/14] ◆ Tparent [14/14] ◆ TTreetype ◆ TUser ◆ TValue ◆ E_memberIndex [1/5] Enumerator e__allMandatory  e_treetype  e_fdict  e_nodes  e_label  e_user 

Definition at line 98 of file BioTreeContainer_.hpp.

◆ E_memberIndex [2/5] ◆ E_memberIndex [3/5] ◆ E_memberIndex [4/5] Enumerator e__allMandatory  e_id  e_parent  e_features 

Definition at line 90 of file Node_.hpp.

◆ E_memberIndex [5/5] Enumerator e__allMandatory  e_featureid  e_value 

Definition at line 89 of file NodeFeature_.hpp.

◆ CanGet() [1/3] bool CFeatureDictSet_Base::CanGet ( void  ) const inline ◆ CanGet() [2/3] bool CNodeFeatureSet_Base::CanGet ( void  ) const inline

Check if it is safe to call Get method.

Returns

Definition at line 158 of file NodeFeatureSet_.hpp.

◆ CanGet() [3/3] bool CNodeSet_Base::CanGet ( void  ) const inline ◆ CanGetDistances() bool CDistanceMatrix_Base::CanGetDistances ( void  ) const inline

Check if it is safe to call GetDistances method.

Returns

Definition at line 221 of file DistanceMatrix_.hpp.

◆ CanGetFdict() bool CBioTreeContainer_Base::CanGetFdict ( void  ) const inline

Check if it is safe to call GetFdict method.

Returns

Definition at line 384 of file BioTreeContainer_.hpp.

◆ CanGetFeatureid() bool CNodeFeature_Base::CanGetFeatureid ( void  ) const inline ◆ CanGetFeatures() bool CNode_Base::CanGetFeatures ( void  ) const inline ◆ CanGetId() [1/2] bool CFeatureDescr_Base::CanGetId ( void  ) const inline ◆ CanGetId() [2/2] bool CNode_Base::CanGetId ( void  ) const inline ◆ CanGetLabel() bool CBioTreeContainer_Base::CanGetLabel ( void  ) const inline ◆ CanGetLabels() bool CDistanceMatrix_Base::CanGetLabels ( void  ) const inline

Check if it is safe to call GetLabels method.

Returns

Definition at line 196 of file DistanceMatrix_.hpp.

◆ CanGetName() bool CFeatureDescr_Base::CanGetName ( void  ) const inline ◆ CanGetNodes() bool CBioTreeContainer_Base::CanGetNodes ( void  ) const inline

Check if it is safe to call GetNodes method.

Returns

Definition at line 414 of file BioTreeContainer_.hpp.

◆ CanGetParent() bool CNode_Base::CanGetParent ( void  ) const inline ◆ CanGetTreetype() bool CBioTreeContainer_Base::CanGetTreetype ( void  ) const inline ◆ CanGetUser() bool CBioTreeContainer_Base::CanGetUser ( void  ) const inline ◆ CanGetValue() bool CNodeFeature_Base::CanGetValue ( void  ) const inline ◆ CBioTreeContainer_Base() [1/2] ◆ CBioTreeContainer_Base() [2/2] END_CLASS_INFO CBioTreeContainer_Base::CBioTreeContainer_Base ( void  ) ◆ CDistanceMatrix_Base() [1/2] ◆ CDistanceMatrix_Base() [2/2] ◆ CFeatureDescr() [1/2] ◆ CFeatureDescr() [2/2] CFeatureDescr::CFeatureDescr ( void  ) inline

Definition at line 86 of file FeatureDescr.hpp.

◆ CFeatureDescr_Base() [1/2] ◆ CFeatureDescr_Base() [2/2] ◆ CFeatureDictSet() [1/2] ◆ CFeatureDictSet() [2/2] ◆ CFeatureDictSet_Base() [1/2] ◆ CFeatureDictSet_Base() [2/2] ◆ CNode() [1/2] ◆ CNode() [2/2] ◆ CNode_Base() [1/2] ◆ CNode_Base() [2/2] ◆ CNodeFeature() [1/2] ◆ CNodeFeature() [2/2] CNodeFeature::CNodeFeature ( void  ) inline

Definition at line 86 of file NodeFeature.hpp.

◆ CNodeFeature_Base() [1/2] ◆ CNodeFeature_Base() [2/2] ◆ CNodeFeatureSet() [1/2] ◆ CNodeFeatureSet() [2/2] ◆ CNodeFeatureSet_Base() [1/2] ◆ CNodeFeatureSet_Base() [2/2] ◆ CNodeSet() [1/2] ◆ CNodeSet() [2/2] CNodeSet::CNodeSet ( void  ) inline

Definition at line 86 of file NodeSet.hpp.

◆ CNodeSet_Base() [1/2] ◆ CNodeSet_Base() [2/2] ◆ DECLARE_INTERNAL_TYPE_INFO() [1/8] CBioTreeContainer_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [2/8] CDistanceMatrix_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [3/8] CFeatureDescr_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [4/8] CFeatureDictSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [5/8] CNode_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [6/8] CNodeFeature_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [7/8] CNodeFeatureSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ DECLARE_INTERNAL_TYPE_INFO() [8/8] CNodeSet_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ Get() [1/3] ◆ Get() [2/3] ◆ Get() [3/3] ◆ GetDistances() ◆ GetFdict() ◆ GetFeatureid() ◆ GetFeatures() ◆ GetId() [1/2] ◆ GetId() [2/2] ◆ GetLabel() ◆ GetLabels() ◆ GetName() ◆ GetNodes() ◆ GetParent() ◆ GetTreetype() ◆ GetUser() ◆ GetValue() ◆ IsSet() [1/3] bool CFeatureDictSet_Base::IsSet ( void  ) const inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CFeatureDescr > > Tdata'

Returns

Definition at line 152 of file FeatureDictSet_.hpp.

References CFeatureDictSet_Base::m_set_State.

◆ IsSet() [2/3] bool CNodeFeatureSet_Base::IsSet ( void  ) const inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CNodeFeature > > Tdata'

Returns

Definition at line 152 of file NodeFeatureSet_.hpp.

References CNodeFeatureSet_Base::m_set_State.

◆ IsSet() [3/3] bool CNodeSet_Base::IsSet ( void  ) const inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CNode > > Tdata'

Returns

Definition at line 152 of file NodeSet_.hpp.

References CNodeSet_Base::m_set_State.

◆ IsSetDistances() bool CDistanceMatrix_Base::IsSetDistances ( void  ) const inline

n(n-1)/2 pairwise distances (0, 1)...(0, n), (1, 2)...(1, n)...

Check if a value has been assigned to Distances data member.

Data member Distances is mandatory; its type is defined as 'typedef vector< double > TDistances'

Returns

Definition at line 215 of file DistanceMatrix_.hpp.

References CDistanceMatrix_Base::m_set_State.

◆ IsSetFdict() bool CBioTreeContainer_Base::IsSetFdict ( void  ) const inline ◆ IsSetFeatureid() bool CNodeFeature_Base::IsSetFeatureid ( void  ) const inline ◆ IsSetFeatures() bool CNode_Base::IsSetFeatures ( void  ) const inline ◆ IsSetId() [1/2] bool CFeatureDescr_Base::IsSetId ( void  ) const inline ◆ IsSetId() [2/2] bool CNode_Base::IsSetId ( void  ) const inline ◆ IsSetLabel() bool CBioTreeContainer_Base::IsSetLabel ( void  ) const inline ◆ IsSetLabels() bool CDistanceMatrix_Base::IsSetLabels ( void  ) const inline

n labels Check if a value has been assigned to Labels data member.

Data member Labels is mandatory; its type is defined as 'typedef vector< string > TLabels'

Returns

Definition at line 190 of file DistanceMatrix_.hpp.

References CDistanceMatrix_Base::m_set_State.

◆ IsSetName() bool CFeatureDescr_Base::IsSetName ( void  ) const inline ◆ IsSetNodes() bool CBioTreeContainer_Base::IsSetNodes ( void  ) const inline ◆ IsSetParent() bool CNode_Base::IsSetParent ( void  ) const inline ◆ IsSetTreetype() bool CBioTreeContainer_Base::IsSetTreetype ( void  ) const inline ◆ IsSetUser() bool CBioTreeContainer_Base::IsSetUser ( void  ) const inline ◆ IsSetValue() bool CNodeFeature_Base::IsSetValue ( void  ) const inline ◆ operator const Tdata &() [1/3] ◆ operator const Tdata &() [2/3] ◆ operator const Tdata &() [3/3]

Conversion operator to 'const Tdata' type.

Definition at line 177 of file NodeSet_.hpp.

◆ operator Tdata &() [1/3] ◆ operator Tdata &() [2/3] ◆ operator Tdata &() [3/3]

Conversion operator to 'Tdata' type.

Definition at line 183 of file NodeSet_.hpp.

◆ operator=() [1/14] ◆ operator=() [2/14] ◆ operator=() [3/14] ◆ operator=() [4/14] ◆ operator=() [5/14] ◆ operator=() [6/14] ◆ operator=() [7/14] ◆ operator=() [8/14] ◆ operator=() [9/14] ◆ operator=() [10/14] ◆ operator=() [11/14] ◆ operator=() [12/14] ◆ operator=() [13/14] ◆ operator=() [14/14] ◆ Reset() [1/8] void CBioTreeContainer_Base::Reset ( void  ) virtual ◆ Reset() [2/8] void CDistanceMatrix_Base::Reset ( void  ) virtual ◆ Reset() [3/8] void CFeatureDescr_Base::Reset ( void  ) virtual ◆ Reset() [4/8] void CFeatureDictSet_Base::Reset ( void  ) ◆ Reset() [5/8] void CNode_Base::Reset ( void  ) virtual ◆ Reset() [6/8] void CNodeFeature_Base::Reset ( void  ) virtual ◆ Reset() [7/8] void CNodeFeatureSet_Base::Reset ( void  ) ◆ Reset() [8/8] void CNodeSet_Base::Reset ( void  ) ◆ ResetDistances() void CDistanceMatrix_Base::ResetDistances ( void  ) ◆ ResetFdict() void CBioTreeContainer_Base::ResetFdict ( void  ) ◆ ResetFeatureid() void CNodeFeature_Base::ResetFeatureid ( void  ) inline ◆ ResetFeatures() void CNode_Base::ResetFeatures ( void  ) ◆ ResetId() [1/2] void CFeatureDescr_Base::ResetId ( void  ) inline ◆ ResetId() [2/2] void CNode_Base::ResetId ( void  ) inline ◆ ResetLabel() void CBioTreeContainer_Base::ResetLabel ( void  ) ◆ ResetLabels() void CDistanceMatrix_Base::ResetLabels ( void  ) ◆ ResetName() void CFeatureDescr_Base::ResetName ( void  ) ◆ ResetNodes() void CBioTreeContainer_Base::ResetNodes ( void  ) ◆ ResetParent() void CNode_Base::ResetParent ( void  ) inline ◆ ResetTreetype() void CBioTreeContainer_Base::ResetTreetype ( void  ) ◆ ResetUser() void CBioTreeContainer_Base::ResetUser ( void  ) ◆ ResetValue() void CNodeFeature_Base::ResetValue ( void  ) ◆ Set() [1/3] ◆ Set() [2/3] ◆ Set() [3/3] ◆ SetDistances() ◆ SetFdict() [1/2] ◆ SetFdict() [2/2] ◆ SetFeatureid() [1/2] ◆ SetFeatureid() [2/2] ◆ SetFeatures() [1/2] ◆ SetFeatures() [2/2] ◆ SetId() [1/4] ◆ SetId() [2/4] ◆ SetId() [3/4] ◆ SetId() [4/4] ◆ SetLabel() [1/3] void CBioTreeContainer_Base::SetLabel ( const TLabel &  value ) inline ◆ SetLabel() [2/3] ◆ SetLabel() [3/3] ◆ SetLabels() ◆ SetName() [1/3] void CFeatureDescr_Base::SetName ( const TName &  value ) inline ◆ SetName() [2/3] ◆ SetName() [3/3] ◆ SetNodes() [1/2]

Assign a value to Nodes data member.

Parameters
value Reference to value.

Definition at line 82 of file BioTreeContainer_.cpp.

References CBioTreeContainer_Base::m_Nodes, and rapidjson::value.

Referenced by MakeBioTreeContainer(), MakeDistanceSensitiveBioTreeContainer(), CChangePhyloPropertyCmd::PerformEdit(), CChangePhyloExpandCollapseCmd::PerformEdit(), s_AddNodeToBtc(), CMSAToolJob::x_AddTreeProjectItem(), CTaxTreeToolJob::x_CreateProjectItems(), CTreeBuilderJob::x_CreateProjectItems(), CPhyTreeFormatter::x_InitTreeFeatures(), CPhyTreeFormatter::x_InitTreeLabels(), and CPhyTreeFormatter::x_MarkLeavesBySeqId().

◆ SetNodes() [2/2] ◆ SetParent() [1/2] ◆ SetParent() [2/2] ◆ SetTreetype() [1/3] ◆ SetTreetype() [2/3] ◆ SetTreetype() [3/3] ◆ SetUser() [1/2] ◆ SetUser() [2/2] ◆ SetValue() [1/3] void CNodeFeature_Base::SetValue ( const TValue &  value ) inline ◆ SetValue() [2/3] ◆ SetValue() [3/3] ◆ ~CBioTreeContainer_Base() ◆ ~CDistanceMatrix_Base() CDistanceMatrix_Base::~CDistanceMatrix_Base ( void  ) virtual

Definition at line 86 of file DistanceMatrix_.cpp.

◆ ~CFeatureDescr() ◆ ~CFeatureDescr_Base() CFeatureDescr_Base::~CFeatureDescr_Base ( void  ) virtual

Definition at line 81 of file FeatureDescr_.cpp.

◆ ~CFeatureDictSet() ◆ ~CFeatureDictSet_Base() CFeatureDictSet_Base::~CFeatureDictSet_Base ( void  ) virtual

Definition at line 74 of file FeatureDictSet_.cpp.

◆ ~CNode() ◆ ~CNode_Base() CNode_Base::~CNode_Base ( void  ) virtual

Definition at line 95 of file Node_.cpp.

◆ ~CNodeFeature() ◆ ~CNodeFeature_Base() CNodeFeature_Base::~CNodeFeature_Base ( void  ) virtual

Definition at line 81 of file NodeFeature_.cpp.

◆ ~CNodeFeatureSet() ◆ ~CNodeFeatureSet_Base() CNodeFeatureSet_Base::~CNodeFeatureSet_Base ( void  ) virtual

Definition at line 74 of file NodeFeatureSet_.cpp.

◆ ~CNodeSet() CNodeSet::~CNodeSet ( void  )

Definition at line 50 of file NodeSet.cpp.

◆ ~CNodeSet_Base() CNodeSet_Base::~CNodeSet_Base ( void  ) virtual

Definition at line 74 of file NodeSet_.cpp.

◆ m_data [1/3] ◆ m_data [2/3] ◆ m_data [3/3] ◆ m_Distances vector< double > CDistanceMatrix_Base::m_Distances private ◆ m_Fdict ◆ m_Featureid int CNodeFeature_Base::m_Featureid private ◆ m_Features ◆ m_Id [1/2] int CFeatureDescr_Base::m_Id private ◆ m_Id [2/2] ◆ m_Label string CBioTreeContainer_Base::m_Label private ◆ m_Labels vector< string > CDistanceMatrix_Base::m_Labels private ◆ m_Name string CFeatureDescr_Base::m_Name private ◆ m_Nodes ◆ m_Parent ◆ m_set_State [1/8] Uint4 CBioTreeContainer_Base::m_set_State[1] private ◆ m_set_State [2/8] Uint4 CDistanceMatrix_Base::m_set_State[1] private ◆ m_set_State [3/8] Uint4 CFeatureDescr_Base::m_set_State[1] private ◆ m_set_State [4/8] Uint4 CFeatureDictSet_Base::m_set_State[1] private ◆ m_set_State [5/8] Uint4 CNode_Base::m_set_State[1] private ◆ m_set_State [6/8] Uint4 CNodeFeature_Base::m_set_State[1] private ◆ m_set_State [7/8] Uint4 CNodeFeatureSet_Base::m_set_State[1] private ◆ m_set_State [8/8] Uint4 CNodeSet_Base::m_set_State[1] private ◆ m_Treetype string CBioTreeContainer_Base::m_Treetype private ◆ m_User ◆ m_Value

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